Wall clock time and date at job start Tue Mar 31 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46728 * 2 1 4 4 C 1.36938 * 119.99208 * 85.10538 * 3 2 1 5 5 H 1.08002 * 120.00586 * 338.84476 * 4 3 2 6 6 C 1.38813 * 119.99713 * 158.57705 * 4 3 2 7 7 N 1.31620 * 119.99918 * 354.43145 * 6 4 3 8 8 Si 1.86801 * 120.00121 * 174.43082 * 6 4 3 9 9 H 1.48507 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47316 * 119.99746 * 8 6 4 11 11 H 1.48496 * 109.46927 * 240.00051 * 8 6 4 12 12 C 1.46492 * 120.00245 * 265.09950 * 3 2 1 13 13 C 1.50709 * 109.46935 * 275.86694 * 12 3 2 14 14 O 1.21272 * 120.00175 * 5.74181 * 13 12 3 15 15 N 1.34776 * 119.99552 * 185.74233 * 13 12 3 16 16 C 1.46495 * 120.00303 * 2.26130 * 15 13 12 17 17 C 1.46498 * 119.99572 * 182.26833 * 15 13 12 18 18 H 1.09003 * 109.47383 * 49.63606 * 17 15 13 19 19 C 1.53003 * 109.47375 * 169.63405 * 17 15 13 20 20 C 1.52995 * 109.47009 * 59.99615 * 19 17 15 21 21 C 1.53001 * 109.47356 * 60.00344 * 20 19 17 22 22 C 1.53004 * 109.46939 * 300.00149 * 21 20 19 23 23 C 1.52993 * 109.47299 * 289.63349 * 17 15 13 24 24 H 1.08996 * 109.47672 * 180.02562 * 23 17 15 25 25 C 1.52998 * 109.47310 * 59.99992 * 23 17 15 26 26 H 1.09003 * 109.47333 * 299.99481 * 1 2 3 27 27 H 1.09000 * 109.47392 * 59.99615 * 1 2 3 28 28 H 1.09005 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46950 * 240.00821 * 2 1 3 30 30 H 1.08993 * 109.47537 * 120.00756 * 2 1 3 31 31 H 0.97003 * 120.00156 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47274 * 35.86999 * 12 3 2 33 33 H 1.08999 * 109.46942 * 155.86996 * 12 3 2 34 34 H 1.09005 * 109.46846 * 92.26977 * 16 15 13 35 35 H 1.09006 * 109.47481 * 212.26992 * 16 15 13 36 36 H 1.08998 * 109.47403 * 332.27080 * 16 15 13 37 37 H 1.09000 * 109.47805 * 179.97438 * 19 17 15 38 38 H 1.09003 * 109.47292 * 299.99890 * 19 17 15 39 39 H 1.09005 * 109.47681 * 300.00484 * 20 19 17 40 40 H 1.09001 * 109.47689 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47648 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47072 * 59.99299 * 21 20 19 43 43 H 1.08996 * 109.47056 * 299.99964 * 22 21 20 44 44 H 1.08996 * 109.47135 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.47146 * 51.08897 * 25 23 17 46 46 H 1.08996 * 109.47733 * 171.09395 * 25 23 17 47 47 H 1.08999 * 109.47267 * 291.09526 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1510 2.0604 1.1817 5 1 1.5994 1.7405 2.0534 6 6 2.9988 3.1567 1.2606 7 7 3.7571 3.4775 0.2338 8 14 3.0633 4.1769 2.8242 9 1 2.1204 3.6121 3.8229 10 1 4.4420 4.1519 3.3750 11 1 2.6781 5.5778 2.5174 12 6 2.3646 2.0358 -1.2640 13 6 3.7750 1.6702 -1.6490 14 8 4.3902 0.8551 -0.9950 15 7 4.3526 2.2493 -2.7202 16 6 3.6278 3.2702 -3.4809 17 6 5.7053 1.8577 -3.1240 18 1 5.7671 0.7709 -3.1815 19 6 6.0230 2.4597 -4.4943 20 6 5.9363 3.9851 -4.4137 21 6 6.9447 4.4996 -3.3845 22 6 6.6271 3.8975 -2.0142 23 6 6.7138 2.3721 -2.0949 24 1 7.7203 2.0811 -2.3955 25 6 6.3963 1.7701 -0.7246 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 4.3499 4.2434 0.2891 32 1 1.6780 1.7063 -2.0438 33 1 2.2887 3.1167 -1.1461 34 1 3.8721 4.2573 -3.0884 35 1 3.9167 3.2147 -4.5305 36 1 2.5554 3.0981 -3.3897 37 1 7.0296 2.1688 -4.7946 38 1 5.3046 2.0932 -5.2276 39 1 4.9298 4.2765 -4.1132 40 1 6.1621 4.4141 -5.3899 41 1 6.8827 5.5863 -3.3266 42 1 7.9512 4.2082 -3.6848 43 1 5.6207 4.1888 -1.7138 44 1 7.3458 4.2637 -1.2810 45 1 6.3021 0.6880 -0.8161 46 1 7.2006 2.0072 -0.0283 47 1 5.4598 2.1861 -0.3532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355651400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:49 Heat of formation + Delta-G solvation = 12.481711 kcal Electronic energy + Delta-G solvation = -25502.217688 eV Core-core repulsion = 22300.924820 eV Total energy + Delta-G solvation = -3201.292868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52767 -38.88445 -37.02440 -35.23873 -33.74543 -33.35147 -31.45596 -30.57242 -28.27773 -28.19020 -26.20400 -25.35446 -23.17039 -22.45964 -22.01039 -20.84862 -19.40526 -18.50014 -17.50756 -17.16867 -16.82984 -16.17570 -15.62726 -15.42877 -15.22367 -15.15732 -14.61358 -14.44216 -14.16551 -13.91941 -13.80317 -13.28509 -13.20254 -13.01641 -12.91779 -12.80330 -12.68007 -12.58748 -12.51996 -12.25226 -12.20778 -12.11601 -11.88196 -11.72630 -11.47989 -11.21424 -10.92532 -10.78280 -10.64823 -10.61954 -9.78761 -8.91451 -8.54021 -7.74174 -5.14910 1.46272 1.50942 1.57066 2.49414 2.53436 2.77395 3.41858 3.75077 3.88441 3.92530 4.02831 4.35454 4.36515 4.43128 4.47663 4.58377 4.65090 4.66750 4.69730 4.73993 4.79594 4.84593 4.88756 4.93267 5.03550 5.08256 5.09854 5.12482 5.16722 5.20409 5.28710 5.29207 5.42972 5.45818 5.48028 5.53464 5.60765 5.62088 5.67346 5.72842 6.24686 6.28526 6.46290 7.04824 7.29860 7.91462 8.17055 8.39355 9.28190 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.007641 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.774595 B = 3663.589049 C = 4490.784680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.144 3.856 3 N -0.592 5.592 4 C -0.250 4.250 5 H 0.062 0.938 6 C -0.039 4.039 7 N -0.902 5.902 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.308 1.308 11 H -0.287 1.287 12 C 0.168 3.832 13 C 0.524 3.476 14 O -0.570 6.570 15 N -0.612 5.612 16 C 0.081 3.919 17 C 0.158 3.842 18 H 0.042 0.958 19 C -0.112 4.112 20 C -0.158 4.158 21 C -0.108 4.108 22 C -0.107 4.107 23 C -0.085 4.085 24 H 0.059 0.941 25 C -0.155 4.155 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.245 0.755 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.032 0.968 45 H 0.031 0.969 46 H -0.010 1.010 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 1.863 -13.096 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 N -0.313 5.313 4 C -0.380 4.380 5 H 0.080 0.920 6 C -0.234 4.234 7 N -0.550 5.550 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.236 1.236 11 H -0.214 1.214 12 C 0.039 3.961 13 C 0.314 3.686 14 O -0.449 6.449 15 N -0.348 5.348 16 C -0.061 4.061 17 C 0.054 3.946 18 H 0.060 0.940 19 C -0.150 4.150 20 C -0.194 4.194 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.105 4.105 24 H 0.077 0.923 25 C -0.211 4.211 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.009 0.991 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.462 1.541 -12.727 12.903 hybrid contribution 0.717 0.387 1.628 1.821 sum 2.179 1.928 -11.099 11.474 Atomic orbital electron populations 1.22120 0.96812 1.00859 1.01016 1.20798 0.93654 0.85409 0.98277 1.43923 1.74983 1.09761 1.02601 1.19394 1.19451 1.08969 0.90229 0.91965 1.25404 0.97048 1.01343 0.99622 1.69732 1.27140 1.28402 1.29702 0.85324 0.76041 0.78822 0.80804 1.20344 1.23588 1.21388 1.20663 0.89641 0.99686 0.86148 1.21803 0.90578 0.79199 0.77015 1.90577 1.64489 1.37597 1.52230 1.47829 1.15244 1.41463 1.30288 1.22195 0.96239 0.90694 0.96937 1.20865 0.82439 0.96930 0.94413 0.93963 1.21717 1.02696 0.96528 0.94035 1.22539 1.02790 0.94563 0.99511 1.21460 0.99386 0.99672 0.94058 1.21467 1.01278 0.94327 0.97389 1.21392 0.97818 0.96064 0.95221 0.92251 1.22659 1.02308 0.99964 0.96213 0.94173 0.93119 0.91504 0.94511 0.95808 0.94417 0.93559 0.88541 0.93079 0.88090 0.91914 0.90137 0.89954 0.88006 0.89999 0.91828 0.92142 0.92147 0.94913 0.94996 0.99147 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.21 71.98 0.74 -4.46 16 2 C 0.14 6.27 6.26 86.38 0.54 6.81 16 3 N -0.59 -29.31 2.07 -706.35 -1.46 -30.78 16 4 C -0.25 -13.56 9.70 84.03 0.82 -12.74 16 5 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 6 C -0.04 -2.08 5.21 84.86 0.44 -1.64 16 7 N -0.90 -47.60 7.03 21.65 0.15 -47.45 16 8 Si 0.96 45.26 29.56 68.60 2.03 47.29 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.17 7.60 3.77 85.64 0.32 7.92 16 13 C 0.52 23.75 4.72 87.66 0.41 24.16 16 14 O -0.57 -30.44 11.16 -3.00 -0.03 -30.47 16 15 N -0.61 -22.02 2.24 -835.67 -1.87 -23.89 16 16 C 0.08 2.24 7.81 127.77 1.00 3.24 16 17 C 0.16 5.24 2.59 44.99 0.12 5.36 16 18 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 19 C -0.11 -2.55 4.95 30.59 0.15 -2.40 16 20 C -0.16 -3.32 5.13 30.59 0.16 -3.16 16 21 C -0.11 -2.70 5.92 30.60 0.18 -2.52 16 22 C -0.11 -3.67 5.03 30.60 0.15 -3.52 16 23 C -0.09 -3.15 2.54 -10.79 -0.03 -3.18 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 C -0.15 -7.37 7.28 71.98 0.52 -6.85 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 30 H 0.02 1.09 8.08 -2.39 -0.02 1.07 16 31 H 0.25 13.02 8.21 -92.71 -0.76 12.26 16 32 H 0.05 1.85 7.74 -2.39 -0.02 1.83 16 33 H 0.10 4.66 5.93 -2.39 -0.01 4.64 16 34 H 0.05 1.48 6.23 -2.38 -0.01 1.47 16 35 H 0.10 2.05 4.89 -2.38 -0.01 2.04 16 36 H 0.06 1.69 6.49 -2.39 -0.02 1.67 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.60 7.35 -2.39 -0.02 1.58 16 39 H 0.10 2.25 2.97 -7.21 -0.02 2.23 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.06 2.40 6.74 -2.39 -0.02 2.38 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.03 1.61 6.63 -2.38 -0.02 1.60 16 46 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.12 6.12 3.39 -2.39 -0.01 6.12 16 Total: -1.00 -64.00 334.53 5.27 -58.73 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.93 Total: 19.54 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.53 Total: 7.03 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.18 Total: -102.12 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.03 Total: -30.47 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.00 5.27 -58.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355651400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.209 kcal (2) G-P(sol) polarization free energy of solvation -63.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds