Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47566 * 2 1 4 4 C 1.36938 * 119.99614 * 274.97907 * 3 2 1 5 5 H 1.08001 * 120.00160 * 337.93525 * 4 3 2 6 6 C 1.38813 * 119.99915 * 157.93821 * 4 3 2 7 7 N 1.31617 * 119.99700 * 8.55118 * 6 4 3 8 8 Si 1.86793 * 120.00079 * 188.54532 * 6 4 3 9 9 H 1.48505 * 109.47251 * 90.00246 * 8 6 4 10 10 H 1.48500 * 109.47420 * 210.00410 * 8 6 4 11 11 H 1.48498 * 109.47627 * 330.00595 * 8 6 4 12 12 C 1.46493 * 120.00093 * 94.97389 * 3 2 1 13 13 C 1.50700 * 109.47271 * 270.00180 * 12 3 2 14 14 O 1.21280 * 120.00146 * 359.72935 * 13 12 3 15 15 N 1.34780 * 119.99859 * 179.97438 * 13 12 3 16 16 C 1.46499 * 120.00398 * 0.02562 * 15 13 12 17 17 C 1.46502 * 119.99691 * 180.02562 * 15 13 12 18 18 C 1.53001 * 109.47118 * 304.71499 * 17 15 13 19 19 C 1.53003 * 109.47389 * 300.00317 * 18 17 15 20 20 C 1.52999 * 109.46812 * 299.99959 * 19 18 17 21 21 C 1.53001 * 109.47003 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47402 * 60.00016 * 20 19 18 23 23 C 1.52999 * 109.47008 * 184.71952 * 17 15 13 24 24 H 1.08996 * 109.47368 * 300.00757 * 1 2 3 25 25 H 1.09007 * 109.46775 * 60.00108 * 1 2 3 26 26 H 1.08998 * 109.47736 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47368 * 239.99243 * 2 1 3 28 28 H 1.09000 * 109.47081 * 119.99710 * 2 1 3 29 29 H 0.96999 * 119.99658 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47006 * 150.00412 * 12 3 2 31 31 H 1.09001 * 109.47360 * 30.00648 * 12 3 2 32 32 H 1.09004 * 109.47256 * 84.60823 * 16 15 13 33 33 H 1.09000 * 109.47325 * 204.61078 * 16 15 13 34 34 H 1.09004 * 109.46639 * 324.61088 * 16 15 13 35 35 H 1.08996 * 109.47054 * 64.72082 * 17 15 13 36 36 H 1.08997 * 109.46784 * 60.00197 * 18 17 15 37 37 H 1.09001 * 109.47169 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47218 * 180.02562 * 19 18 17 39 39 H 1.08991 * 109.46946 * 59.99928 * 19 18 17 40 40 H 1.09001 * 109.47392 * 299.99654 * 20 19 18 41 41 H 1.09002 * 109.46751 * 299.99390 * 21 20 19 42 42 H 1.08998 * 109.47565 * 59.99491 * 21 20 19 43 43 H 1.09002 * 109.47054 * 180.02562 * 21 20 19 44 44 H 1.08997 * 109.47076 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.46688 * 59.99757 * 22 20 19 46 46 H 1.09002 * 109.47352 * 180.02562 * 23 17 15 47 47 H 1.09007 * 109.47178 * 300.00176 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1496 2.0610 -1.1815 5 1 2.2456 1.5171 -2.1096 6 6 2.1593 3.4491 -1.1862 7 7 2.2122 4.1106 -0.0496 8 14 2.0973 4.3780 -2.8056 9 1 0.6821 4.6342 -3.1755 10 1 2.8134 5.6710 -2.6623 11 1 2.7472 3.5673 -3.8666 12 6 2.3663 2.0351 1.2639 13 6 1.1511 2.7312 1.8205 14 8 0.0993 2.6898 1.2181 15 7 1.2344 3.4041 2.9854 16 6 2.5064 3.4592 3.7102 17 6 0.0530 4.0803 3.5267 18 6 -0.5058 5.0467 2.4804 19 6 0.5593 6.0863 2.1259 20 6 0.9493 6.8659 3.3833 21 6 2.0140 7.9060 3.0288 22 6 1.5081 5.8996 4.4298 23 6 0.4430 4.8600 4.7841 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 2.2193 5.0806 -0.0529 30 1 3.1558 2.7662 1.0894 31 1 2.7147 1.2872 1.9761 32 1 3.1168 4.2697 3.3118 33 1 2.3142 3.6354 4.7685 34 1 3.0346 2.5134 3.5894 35 1 -0.7058 3.3397 3.7793 36 1 -0.7836 4.4913 1.5846 37 1 -1.3846 5.5502 2.8833 38 1 0.1611 6.7750 1.3808 39 1 1.4383 5.5832 1.7231 40 1 0.0703 7.3691 3.7861 41 1 2.8931 7.4031 2.6258 42 1 1.6156 8.5943 2.2835 43 1 2.2922 8.4611 3.9247 44 1 1.7864 6.4551 5.3254 45 1 2.3872 5.3964 4.0269 46 1 -0.4361 5.3628 5.1872 47 1 0.8412 4.1715 5.5296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355669029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -3.255539 kcal Electronic energy + Delta-G solvation = -25356.970034 eV Core-core repulsion = 22154.994748 eV Total energy + Delta-G solvation = -3201.975286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74884 -37.30100 -35.21879 -33.91787 -31.74785 -31.37550 -30.42192 -28.92402 -26.89181 -26.31045 -24.73823 -23.44928 -22.17199 -21.05191 -20.31235 -19.28832 -17.82633 -16.66368 -15.77843 -15.33285 -15.15992 -14.62897 -14.06291 -13.85036 -13.74373 -13.51803 -13.45125 -12.81853 -12.64467 -12.23272 -12.01706 -11.88981 -11.74381 -11.56653 -11.47209 -11.31268 -11.06888 -11.06507 -10.94639 -10.84669 -10.71077 -10.38077 -10.25725 -10.01907 -9.86407 -9.75190 -9.63745 -9.58787 -9.47115 -8.63701 -7.96814 -7.44692 -6.68896 -5.71595 -3.09754 3.43703 3.49651 3.52297 4.06854 4.39123 4.62770 5.05026 5.13725 5.16831 5.45614 5.49951 5.62731 5.63472 5.66540 5.77787 5.89084 5.93472 6.00166 6.03563 6.07115 6.15916 6.20237 6.20865 6.23600 6.30885 6.38081 6.42852 6.52123 6.52407 6.58359 6.66297 6.73458 6.78785 6.81367 6.92149 7.10647 7.18333 7.26614 7.42978 7.52302 7.73657 7.84474 8.44244 8.73273 9.29433 9.84137 9.99648 10.38248 11.34089 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.007955 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.057765 B = 3518.768273 C = 4509.834263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 N -0.579 5.579 4 C -0.238 4.238 5 H 0.071 0.929 6 C 0.010 3.990 7 N -0.903 5.903 8 Si 0.904 3.096 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.167 3.833 13 C 0.535 3.465 14 O -0.533 6.533 15 N -0.625 5.625 16 C 0.087 3.913 17 C 0.160 3.840 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.133 4.133 23 C -0.123 4.123 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.252 0.748 30 H 0.119 0.881 31 H 0.020 0.980 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 2.077 10.854 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 N -0.300 5.300 4 C -0.367 4.367 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.551 5.551 8 Si 0.735 3.265 9 H -0.218 1.218 10 H -0.220 1.220 11 H -0.209 1.209 12 C 0.037 3.963 13 C 0.325 3.675 14 O -0.408 6.408 15 N -0.363 5.363 16 C -0.056 4.056 17 C 0.056 3.944 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.107 4.107 21 C -0.201 4.201 22 C -0.170 4.170 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.211 2.184 10.471 10.698 hybrid contribution -0.385 0.970 -0.762 1.292 sum -0.173 3.154 9.708 10.209 Atomic orbital electron populations 1.22322 0.99174 0.97671 1.02925 1.20825 0.92506 0.86699 0.98015 1.43796 1.73877 1.09776 1.02536 1.19191 1.42695 0.88847 0.85975 0.91135 1.24846 1.00662 0.96436 0.96662 1.69693 1.55476 1.06494 1.23402 0.86263 0.77546 0.79123 0.83577 1.21755 1.22042 1.20919 1.20815 0.95068 0.94838 0.85581 1.21967 0.91407 0.77302 0.76855 1.90423 1.31632 1.61695 1.57070 1.48079 1.08928 1.55065 1.24272 1.21770 0.86816 1.00940 0.96107 1.20674 0.88215 0.93017 0.92526 1.21877 0.96865 0.96900 1.01176 1.21609 1.01411 0.96799 0.95327 1.21113 0.97353 0.95532 0.96697 1.21795 0.99383 0.98560 1.00353 1.22096 0.99882 0.96939 0.98087 1.21802 0.99323 0.97809 0.97106 0.92402 0.93120 0.95858 0.94244 0.94809 0.93615 0.86305 0.96227 0.92953 0.92080 0.92554 0.92992 0.88747 0.93960 0.93949 0.88074 0.92808 0.92476 0.93283 0.93627 0.93186 0.89247 0.91802 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.67 37.15 0.36 -3.11 16 2 C 0.15 3.15 6.44 -4.04 -0.03 3.13 16 3 N -0.58 -14.38 2.07 -174.62 -0.36 -14.74 16 4 C -0.24 -6.44 9.69 -15.06 -0.15 -6.58 16 5 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 6 C 0.01 0.28 5.41 -17.43 -0.09 0.19 16 7 N -0.90 -23.73 7.44 55.49 0.41 -23.32 16 8 Si 0.90 22.15 29.56 -169.99 -5.03 17.13 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.17 3.83 4.09 -5.20 -0.02 3.81 16 13 C 0.54 12.18 5.27 -10.98 -0.06 12.13 16 14 O -0.53 -14.04 11.72 5.56 0.07 -13.97 16 15 N -0.62 -11.63 2.27 -173.93 -0.39 -12.03 16 16 C 0.09 1.31 8.06 59.85 0.48 1.80 16 17 C 0.16 2.76 3.03 -67.93 -0.21 2.56 16 18 C -0.13 -2.47 5.16 -26.73 -0.14 -2.61 16 19 C -0.11 -2.10 5.05 -26.73 -0.13 -2.23 16 20 C -0.09 -1.31 2.72 -90.62 -0.25 -1.55 16 21 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 22 C -0.13 -1.78 4.64 -26.73 -0.12 -1.91 16 23 C -0.12 -1.65 4.91 -26.73 -0.13 -1.79 16 24 H 0.06 1.35 6.39 -51.93 -0.33 1.02 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 29 H 0.25 6.65 7.20 -40.82 -0.29 6.36 16 30 H 0.12 2.93 6.17 -51.93 -0.32 2.61 16 31 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 32 H 0.05 0.82 6.49 -51.93 -0.34 0.48 16 33 H 0.06 0.76 5.23 -51.93 -0.27 0.49 16 34 H 0.06 0.81 6.66 -51.93 -0.35 0.47 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 2.23 5.83 -51.93 -0.30 1.92 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.14 5.47 -51.93 -0.28 1.85 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.27 3.87 -51.93 -0.20 1.07 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.75 6.71 -51.93 -0.35 0.40 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -29.00 338.18 -8.44 -37.44 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.09 Total: 2.19 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.14 Total: 2.21 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.34 Total: -50.09 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.00 -8.44 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355669029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.182 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds