Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46920 * 2 1 4 4 C 1.46504 * 119.99988 * 270.00193 * 3 2 1 5 5 C 1.50706 * 109.46758 * 269.99882 * 4 3 2 6 6 H 1.07999 * 120.00009 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99663 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99881 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99653 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46834 * 90.00427 * 9 7 5 11 11 H 1.48502 * 109.46838 * 210.00088 * 9 7 5 12 12 H 1.48493 * 109.47120 * 330.00022 * 9 7 5 13 13 C 1.34777 * 119.99996 * 89.99834 * 3 2 1 14 14 O 1.21282 * 119.99616 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00049 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47225 * 179.97438 * 15 13 3 17 17 C 1.46891 * 111.00052 * 293.95183 * 16 15 13 18 18 C 1.46902 * 110.99800 * 169.99532 * 16 15 13 19 19 H 1.09000 * 109.47263 * 60.00269 * 18 16 15 20 20 C 1.52997 * 109.47489 * 299.99935 * 18 16 15 21 21 C 1.53006 * 109.46626 * 179.97438 * 18 16 15 22 22 C 1.53772 * 113.61475 * 277.49770 * 21 18 16 23 23 C 1.53781 * 87.08354 * 220.02318 * 22 21 18 24 24 C 1.53781 * 113.61135 * 179.97438 * 21 18 16 25 25 H 1.09010 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47189 * 299.99830 * 1 2 3 27 27 H 1.08999 * 109.47347 * 60.00127 * 1 2 3 28 28 H 1.09004 * 109.47189 * 240.00170 * 2 1 3 29 29 H 1.08999 * 109.47347 * 119.99872 * 2 1 3 30 30 H 1.08997 * 109.46820 * 29.99987 * 4 3 2 31 31 H 1.08994 * 109.47401 * 150.00119 * 4 3 2 32 32 H 0.97003 * 119.99615 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47662 * 59.99401 * 15 13 3 34 34 H 1.09007 * 109.47106 * 299.99110 * 15 13 3 35 35 H 1.09006 * 109.47212 * 296.04615 * 17 16 15 36 36 H 1.09001 * 109.47298 * 56.04470 * 17 16 15 37 37 H 1.08995 * 109.47721 * 176.04531 * 17 16 15 38 38 H 1.09001 * 109.47230 * 59.99552 * 20 18 16 39 39 H 1.09001 * 109.47375 * 180.02562 * 20 18 16 40 40 H 1.09000 * 109.47140 * 300.00408 * 20 18 16 41 41 H 1.09000 * 112.84759 * 48.80767 * 21 18 16 42 42 H 1.09000 * 113.61922 * 334.57064 * 22 21 18 43 43 H 1.08999 * 113.61689 * 105.47008 * 22 21 18 44 44 H 1.09005 * 113.61134 * 270.88438 * 23 22 21 45 45 H 1.08994 * 113.69575 * 139.99585 * 23 22 21 46 46 H 1.09000 * 113.61578 * 254.52872 * 24 21 18 47 47 H 1.09003 * 113.61302 * 25.43614 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9131 2.0956 -3.4176 10 1 5.9758 0.8745 -4.2603 11 1 6.3922 3.2628 -4.2009 12 1 6.7733 1.9160 -2.2206 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9923 1.3060 2.4722 16 7 2.3109 2.2059 3.5889 17 6 3.7475 2.5097 3.6267 18 6 1.8586 1.6398 4.8667 19 1 2.3539 0.6837 5.0361 20 6 0.3438 1.4289 4.8235 21 6 2.2078 2.6029 6.0032 22 6 3.6586 2.4738 6.4962 23 6 3.1078 2.6550 7.9205 24 6 1.7740 2.1014 7.3907 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6877 -2.0283 31 1 2.0954 3.1410 -1.1385 32 1 3.6750 3.5163 -4.4441 33 1 2.6227 0.4187 2.5299 34 1 0.9443 1.0115 2.5302 35 1 4.3074 1.5948 3.8213 36 1 4.0560 2.9274 2.6683 37 1 3.9455 3.2321 4.4185 38 1 0.0954 0.7426 4.0139 39 1 0.0082 1.0092 5.7719 40 1 -0.1514 2.3850 4.6541 41 1 1.9053 3.6294 5.7960 42 1 4.0944 1.4906 6.3184 43 1 4.3046 3.2892 6.1708 44 1 3.0527 3.6963 8.2381 45 1 3.5850 2.0117 8.6598 46 1 0.8990 2.6164 7.7872 47 1 1.6943 1.0164 7.4575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357021865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -9.137936 kcal Electronic energy + Delta-G solvation = -23456.869475 eV Core-core repulsion = 20254.639109 eV Total energy + Delta-G solvation = -3202.230366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95861 -38.85064 -36.25383 -35.08355 -32.77204 -31.14916 -30.04845 -28.89886 -26.80967 -25.51418 -25.22201 -24.32848 -22.96902 -22.28384 -20.22070 -19.56530 -18.17582 -16.78169 -16.41524 -16.04819 -15.58802 -15.09691 -14.96967 -14.43713 -14.25625 -14.02991 -13.53648 -13.33747 -12.95349 -12.78997 -12.57276 -12.45048 -12.36370 -12.02406 -11.98594 -11.75687 -11.62449 -11.31967 -11.19992 -11.18411 -10.98999 -10.86465 -10.67001 -10.56539 -10.49788 -10.25079 -10.07583 -10.05486 -9.58880 -8.77429 -8.40667 -8.00718 -7.57635 -6.01239 -4.05798 3.31153 3.37829 3.41538 3.53988 3.70783 4.26816 4.47430 4.47972 4.55738 4.64356 4.74177 5.10091 5.15303 5.25583 5.30677 5.33152 5.40141 5.45088 5.53755 5.56257 5.57327 5.67409 5.69747 5.72028 5.74941 5.78686 5.79238 5.87918 5.94941 5.99185 6.06715 6.13743 6.23239 6.26234 6.40713 6.51313 6.52150 7.05337 7.24115 7.34156 7.51443 7.62819 7.96128 8.27941 8.51830 8.94917 9.21939 9.59398 11.06698 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.004063 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.260475 B = 6890.064544 C = 7747.530188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.032 3.968 16 N -0.516 5.516 17 C 0.015 3.985 18 C 0.090 3.910 19 H 0.036 0.964 20 C -0.147 4.147 21 C -0.098 4.098 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.133 4.133 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.013 0.987 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -6.854 19.263 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.099 4.099 16 N -0.240 5.240 17 C -0.133 4.133 18 C -0.018 4.018 19 H 0.054 0.946 20 C -0.204 4.204 21 C -0.117 4.117 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.171 4.171 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.074 -5.682 18.989 20.460 hybrid contribution 1.394 -1.073 -0.370 1.798 sum -3.680 -6.755 18.619 20.146 Atomic orbital electron populations 1.22227 0.96860 1.01287 1.02364 1.21387 0.93479 0.84434 1.02439 1.48261 1.64279 1.13123 1.07724 1.19228 0.96071 0.93664 0.78151 1.21444 0.97016 1.31737 1.06161 0.92610 1.24934 0.97768 0.94970 0.96440 1.69937 1.35644 1.33485 1.14314 0.86517 0.84808 0.77647 0.78560 1.20697 1.21089 1.19957 1.20142 0.78763 0.87084 0.84715 1.90629 1.44784 1.17786 1.86792 1.22161 1.02394 0.94312 0.91026 1.61690 1.17614 1.43539 1.01190 1.22731 0.86310 0.99381 1.04849 1.21658 0.95827 0.95200 0.89123 0.94588 1.21885 0.94933 1.02387 1.01233 1.22573 0.96098 1.00306 0.92734 1.23122 0.96664 1.02017 0.95850 1.22833 0.97275 1.01197 0.96861 1.22907 0.97414 1.00707 0.96096 0.92280 0.93090 0.91992 0.90051 0.92063 0.95169 0.93909 0.92766 0.92984 0.88350 0.96819 0.89097 0.90922 0.92636 0.92287 0.91605 0.88332 0.90448 0.91124 0.90307 0.91788 0.91534 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.86 2.46 -175.06 -0.43 -13.29 16 4 C 0.25 6.56 5.16 -5.19 -0.03 6.54 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.78 7.37 -10.99 -0.08 10.70 16 14 O -0.52 -13.39 13.91 5.56 0.08 -13.31 16 15 C 0.03 0.51 3.81 -4.98 -0.02 0.49 16 16 N -0.52 -7.94 4.37 -236.33 -1.03 -8.97 16 17 C 0.01 0.23 8.17 60.06 0.49 0.72 16 18 C 0.09 1.06 2.01 -67.71 -0.14 0.93 16 19 H 0.04 0.42 7.94 -51.93 -0.41 0.01 16 20 C -0.15 -1.53 8.79 37.16 0.33 -1.20 16 21 C -0.10 -1.03 2.76 -89.81 -0.25 -1.28 16 22 C -0.14 -1.36 5.70 -25.92 -0.15 -1.51 16 23 C -0.14 -1.19 8.08 -25.90 -0.21 -1.40 16 24 C -0.13 -1.12 6.68 -25.90 -0.17 -1.29 16 25 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.77 7.38 -51.93 -0.38 0.39 16 34 H 0.10 1.36 4.87 -51.92 -0.25 1.11 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 1.79 5.82 -51.93 -0.30 1.49 16 37 H 0.07 1.02 4.92 -51.93 -0.26 0.77 16 38 H 0.05 0.57 6.20 -51.93 -0.32 0.24 16 39 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 43 H 0.07 0.72 6.91 -51.93 -0.36 0.36 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.45 360.47 -8.89 -41.34 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.37 Total: -0.93 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.29 Total: -1.18 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.73 Total: -48.38 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.45 -8.89 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357021865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.203 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds