Wall clock time and date at job start Tue Mar 31 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46928 * 2 1 4 4 C 1.46502 * 119.99956 * 269.99490 * 3 2 1 5 5 C 1.50694 * 109.47285 * 270.00124 * 4 3 2 6 6 H 1.08000 * 120.00057 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99816 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47292 * 59.99524 * 9 7 5 11 11 H 1.48494 * 109.47449 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46793 * 299.99917 * 9 7 5 13 13 C 1.34784 * 119.99868 * 89.99933 * 3 2 1 14 14 O 1.21279 * 119.99469 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99958 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46640 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00371 * 293.95303 * 16 15 13 18 18 C 1.46907 * 110.99653 * 169.99787 * 16 15 13 19 19 H 1.08998 * 109.47302 * 309.99965 * 18 16 15 20 20 C 1.52997 * 109.47038 * 70.00554 * 18 16 15 21 21 C 1.53001 * 109.46932 * 190.00085 * 18 16 15 22 22 C 1.53781 * 113.61407 * 158.85433 * 21 18 16 23 23 C 1.53960 * 87.01989 * 220.04562 * 22 21 18 24 24 C 1.53780 * 113.61530 * 61.24573 * 21 18 16 25 25 H 1.09005 * 109.47244 * 59.99834 * 1 2 3 26 26 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47296 * 300.00073 * 1 2 3 28 28 H 1.08994 * 109.47088 * 240.00178 * 2 1 3 29 29 H 1.09002 * 109.46941 * 119.99740 * 2 1 3 30 30 H 1.09001 * 109.46794 * 30.00381 * 4 3 2 31 31 H 1.08995 * 109.46765 * 149.99899 * 4 3 2 32 32 H 0.96999 * 119.99894 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47455 * 60.00110 * 15 13 3 34 34 H 1.08997 * 109.46859 * 299.99451 * 15 13 3 35 35 H 1.08993 * 109.47102 * 60.00090 * 17 16 15 36 36 H 1.09001 * 109.46749 * 300.00316 * 17 16 15 37 37 H 1.09001 * 109.47259 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47604 * 65.69984 * 20 18 16 39 39 H 1.08998 * 109.47478 * 185.70842 * 20 18 16 40 40 H 1.09006 * 109.46603 * 305.70120 * 20 18 16 41 41 H 1.09003 * 112.85173 * 290.05144 * 21 18 16 42 42 H 1.08999 * 113.61348 * 334.56793 * 22 21 18 43 43 H 1.09005 * 113.61393 * 105.46641 * 22 21 18 44 44 H 1.08995 * 113.53425 * 270.80967 * 23 22 21 45 45 H 1.09002 * 113.73558 * 139.94465 * 23 22 21 46 46 H 1.09000 * 113.61528 * 254.52508 * 24 21 18 47 47 H 1.09001 * 113.61165 * 25.43532 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4175 10 1 6.1404 0.6389 -3.5946 11 1 6.1607 2.7957 -4.7034 12 1 6.8410 2.6191 -2.3829 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9911 1.3064 2.4723 16 7 2.3100 2.2062 3.5888 17 6 3.7470 2.5090 3.6272 18 6 1.8568 1.6406 4.8667 19 1 0.8169 1.3266 4.7766 20 6 2.7249 0.4332 5.2264 21 6 1.9765 2.6998 5.9642 22 6 1.0848 2.4240 7.1864 23 6 0.7972 3.9362 7.2171 24 6 1.1144 3.9481 5.7123 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6749 3.5155 -4.4443 33 1 2.6210 0.4187 2.5303 34 1 0.9430 1.0127 2.5298 35 1 4.0418 2.9907 2.6950 36 1 4.3099 1.5839 3.7520 37 1 3.9555 3.1765 4.4633 38 1 3.7463 0.7634 5.4157 39 1 2.3268 -0.0472 6.1201 40 1 2.7200 -0.2770 4.3994 41 1 3.0109 2.9282 6.2211 42 1 0.2082 1.8173 6.9593 43 1 1.6351 2.0655 8.0564 44 1 1.5088 4.5025 7.8179 45 1 -0.2399 4.1809 7.4467 46 1 1.6885 4.8183 5.3941 47 1 0.2459 3.7588 5.0815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357021866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:27 Heat of formation + Delta-G solvation = -12.502679 kcal Electronic energy + Delta-G solvation = -23471.408718 eV Core-core repulsion = 20269.032446 eV Total energy + Delta-G solvation = -3202.376272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86059 -38.79259 -36.47786 -35.10389 -32.78159 -30.78085 -30.01956 -28.44915 -26.62703 -26.13547 -25.39051 -24.37230 -22.96448 -22.25187 -20.17408 -19.27322 -18.19102 -16.77308 -16.35462 -15.79619 -15.47083 -15.19072 -14.90391 -14.71573 -14.24753 -13.96665 -13.43368 -13.25329 -13.11760 -12.82178 -12.63332 -12.43636 -12.32349 -12.05020 -11.88578 -11.73448 -11.59079 -11.35063 -11.18052 -11.10158 -11.02261 -10.88402 -10.65287 -10.51130 -10.42833 -10.24829 -10.12135 -10.07481 -9.60659 -8.78723 -8.40340 -7.95955 -7.57800 -6.01129 -4.05839 3.32908 3.37548 3.39661 3.53842 3.70524 4.26791 4.47769 4.56637 4.63799 4.75892 4.95057 5.06370 5.13606 5.22936 5.29987 5.32682 5.35349 5.43645 5.50598 5.58343 5.63291 5.68027 5.73968 5.75788 5.78381 5.81512 5.84096 5.86771 5.95256 6.06344 6.08173 6.15977 6.26218 6.29565 6.49455 6.51355 6.52614 7.05053 7.23574 7.32957 7.51242 7.62583 7.96065 8.27924 8.51742 8.94642 9.21820 9.59342 11.06779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.003985 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.794710 B = 7023.938737 C = 7422.224417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.036 3.964 16 N -0.511 5.511 17 C 0.017 3.983 18 C 0.089 3.911 19 H 0.079 0.921 20 C -0.186 4.186 21 C -0.099 4.099 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.117 4.117 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -6.409 18.762 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.095 4.095 16 N -0.234 5.234 17 C -0.130 4.130 18 C -0.019 4.019 19 H 0.097 0.903 20 C -0.245 4.245 21 C -0.117 4.117 22 C -0.172 4.172 23 C -0.185 4.185 24 C -0.154 4.154 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.773 -5.227 18.470 20.045 hybrid contribution 1.429 -1.118 -0.305 1.840 sum -4.345 -6.346 18.165 19.726 Atomic orbital electron populations 1.22223 0.96867 1.01275 1.02361 1.21382 0.93471 0.84434 1.02423 1.48262 1.64270 1.13120 1.07726 1.19218 0.96043 0.93653 0.78153 1.21401 0.97011 1.31823 1.06193 0.92666 1.24927 0.97743 0.94970 0.96424 1.69924 1.35685 1.33454 1.14331 0.86584 0.84950 0.78188 0.77829 1.20317 1.21184 1.20224 1.20148 0.78796 0.87076 0.84717 1.90629 1.44780 1.17760 1.86782 1.22089 1.01935 0.94451 0.91040 1.61845 1.17604 1.42937 1.01035 1.22577 0.86682 0.99406 1.04371 1.21780 0.98721 0.92350 0.89066 0.90304 1.22462 1.01192 0.99139 1.01658 1.22528 0.98961 0.96003 0.94246 1.22951 0.99688 0.96724 0.97816 1.22905 1.01243 0.96427 0.97963 1.22700 0.99964 0.97839 0.94947 0.92013 0.92303 0.93074 0.90076 0.92067 0.95187 0.93920 0.92705 0.92708 0.88936 0.88935 0.96258 0.91910 0.92238 0.92279 0.92686 0.89611 0.90277 0.91933 0.90648 0.91802 0.91545 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.55 5.16 -5.20 -0.03 6.52 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.63 7.40 -10.98 -0.08 10.55 16 14 O -0.52 -13.25 13.89 5.56 0.08 -13.17 16 15 C 0.04 0.56 3.58 -4.98 -0.02 0.54 16 16 N -0.51 -7.62 4.23 -236.33 -1.00 -8.62 16 17 C 0.02 0.27 8.36 60.06 0.50 0.77 16 18 C 0.09 1.02 2.06 -67.71 -0.14 0.88 16 19 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 20 C -0.19 -1.88 8.32 37.16 0.31 -1.57 16 21 C -0.10 -1.03 2.55 -89.81 -0.23 -1.26 16 22 C -0.13 -1.15 7.63 -25.82 -0.20 -1.35 16 23 C -0.15 -1.33 8.09 -25.82 -0.21 -1.53 16 24 C -0.12 -1.30 7.43 -25.92 -0.19 -1.49 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.79 6.19 -51.93 -0.32 0.46 16 34 H 0.09 1.25 6.97 -51.93 -0.36 0.89 16 35 H 0.09 1.80 5.88 -51.93 -0.31 1.49 16 36 H 0.02 0.27 6.59 -51.93 -0.34 -0.07 16 37 H 0.06 0.87 6.59 -51.93 -0.34 0.53 16 38 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.57 6.68 -51.93 -0.35 0.23 16 41 H 0.09 0.92 7.15 -51.93 -0.37 0.55 16 42 H 0.08 0.65 7.98 -51.93 -0.41 0.23 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -32.10 363.31 -8.93 -41.03 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.42 Total: -0.65 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.35 Total: -1.78 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.69 Total: -47.89 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.10 -8.93 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357021866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.528 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds