Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46948 * 2 1 4 4 C 1.46494 * 120.00230 * 269.99973 * 3 2 1 5 5 C 1.50705 * 109.47471 * 270.00183 * 4 3 2 6 6 H 1.08001 * 119.99402 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00301 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00236 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47349 * 89.99737 * 9 7 5 11 11 H 1.48505 * 109.47227 * 210.00244 * 9 7 5 12 12 H 1.48501 * 109.47141 * 329.99607 * 9 7 5 13 13 C 1.34777 * 119.99650 * 89.99854 * 3 2 1 14 14 O 1.21287 * 119.99810 * 180.27265 * 13 3 2 15 15 C 1.50699 * 120.00263 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46965 * 176.10410 * 15 13 3 17 17 C 1.47898 * 110.99834 * 293.61177 * 16 15 13 18 18 C 1.53996 * 107.05958 * 214.15779 * 17 16 15 19 19 C 1.54594 * 105.13818 * 1.22737 * 18 17 16 20 20 C 1.48533 * 110.99595 * 176.21854 * 16 15 13 21 21 H 1.09003 * 110.67160 * 41.28788 * 20 16 15 22 22 C 1.52997 * 110.67033 * 278.15138 * 20 16 15 23 23 C 1.52990 * 109.47616 * 177.12686 * 22 20 16 24 24 C 1.53000 * 109.47106 * 297.13217 * 22 20 16 25 25 H 1.09001 * 109.47043 * 299.99370 * 1 2 3 26 26 H 1.08996 * 109.47433 * 60.00465 * 1 2 3 27 27 H 1.09001 * 109.46636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47333 * 239.99907 * 2 1 3 29 29 H 1.08994 * 109.47299 * 120.00054 * 2 1 3 30 30 H 1.09010 * 109.46957 * 30.00048 * 4 3 2 31 31 H 1.09001 * 109.47288 * 149.99974 * 4 3 2 32 32 H 0.97004 * 120.00057 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46762 * 296.09903 * 15 13 3 34 34 H 1.09000 * 109.47152 * 56.09947 * 15 13 3 35 35 H 1.08997 * 109.91991 * 333.51219 * 17 16 15 36 36 H 1.08995 * 109.91683 * 94.80482 * 17 16 15 37 37 H 1.09005 * 110.31008 * 120.14324 * 18 17 16 38 38 H 1.08998 * 110.31141 * 242.31240 * 18 17 16 39 39 H 1.09002 * 110.72649 * 140.31231 * 19 18 17 40 40 H 1.09003 * 110.72456 * 263.59987 * 19 18 17 41 41 H 1.09010 * 109.46907 * 57.12479 * 22 20 16 42 42 H 1.09004 * 109.47216 * 300.00309 * 23 22 20 43 43 H 1.09001 * 109.47258 * 59.99717 * 23 22 20 44 44 H 1.08997 * 109.47538 * 180.02562 * 23 22 20 45 45 H 1.08994 * 109.47690 * 52.89166 * 24 22 20 46 46 H 1.08995 * 109.47333 * 172.89741 * 24 22 20 47 47 H 1.09000 * 109.46677 * 292.89437 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 5.3912 2.1836 -3.2573 9 14 3.0127 3.4353 -3.9291 10 1 3.1161 4.8556 -3.5080 11 1 3.4055 3.3121 -5.3559 12 1 1.6130 2.9693 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6424 3.1617 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3981 2.1721 3.5873 17 6 3.8615 2.3860 3.5867 18 6 4.3038 2.4880 5.0582 19 6 3.0116 2.2878 5.8829 20 6 2.0816 1.5409 4.8940 21 1 2.3166 0.4766 4.8743 22 6 0.6131 1.7644 5.2603 23 6 0.2993 1.0439 6.5729 24 6 0.3510 3.2627 5.4256 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5816 1.6877 -2.0284 31 1 2.0954 3.1411 -1.1383 32 1 5.7173 2.5741 -4.0833 33 1 0.9312 1.0727 2.5610 34 1 2.5708 0.3826 2.5002 35 1 4.3597 1.5437 3.1068 36 1 4.1014 3.3107 3.0619 37 1 5.0263 1.7059 5.2913 38 1 4.7313 3.4707 5.2575 39 1 3.2073 1.6772 6.7644 40 1 2.5817 3.2487 6.1657 41 1 -0.0231 1.3696 4.4680 42 1 0.4860 -0.0236 6.4551 43 1 0.9355 1.4386 7.3651 44 1 -0.7470 1.2028 6.8335 45 1 0.6924 3.7917 4.5358 46 1 -0.7171 3.4319 5.5615 47 1 0.8912 3.6319 6.2974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357665678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = -36.104613 kcal Electronic energy + Delta-G solvation = -23755.391241 eV Core-core repulsion = 20551.991512 eV Total energy + Delta-G solvation = -3203.399729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.89543 -38.48795 -35.37102 -34.62131 -32.79919 -32.03381 -30.29580 -28.19136 -27.78126 -27.16949 -25.92999 -22.95140 -22.70291 -22.10430 -20.71705 -18.97751 -18.19037 -16.91104 -16.42718 -16.26115 -15.69106 -15.00567 -14.86577 -14.49426 -14.15190 -13.77739 -13.58307 -13.44569 -13.28348 -12.79896 -12.63749 -12.39419 -12.27124 -12.06081 -11.97733 -11.81979 -11.70007 -11.42952 -11.17144 -11.11925 -10.97608 -10.92005 -10.86920 -10.63095 -10.47055 -10.39403 -10.24621 -10.12380 -9.51601 -8.92185 -8.56803 -8.15210 -7.65684 -6.06883 -4.05199 3.30870 3.36781 3.39060 3.43621 3.66364 4.18379 4.41688 4.58226 4.69714 4.95077 5.03504 5.07216 5.14890 5.18063 5.24207 5.28509 5.35976 5.42945 5.50105 5.55350 5.58541 5.61455 5.64311 5.75493 5.81630 5.85902 5.89528 5.94906 5.99421 6.05480 6.11531 6.16472 6.20667 6.32438 6.41201 6.45808 6.50514 6.73222 6.97476 7.08567 7.13868 7.42580 7.64343 8.32945 8.49957 8.95622 9.09225 9.54105 11.06596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.004513 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.343894 B = 6203.125880 C = 6760.390972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.030 3.970 16 N -0.490 5.490 17 C 0.041 3.959 18 C -0.132 4.132 19 C -0.120 4.120 20 C 0.066 3.934 21 H 0.050 0.950 22 C -0.080 4.080 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 -4.942 17.841 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.398 6.398 15 C -0.102 4.102 16 N -0.214 5.214 17 C -0.086 4.086 18 C -0.170 4.170 19 C -0.158 4.158 20 C -0.042 4.042 21 H 0.068 0.932 22 C -0.099 4.099 23 C -0.204 4.204 24 C -0.200 4.200 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.072 -3.782 17.587 20.617 hybrid contribution 0.017 -0.490 -0.750 0.896 sum -10.054 -4.272 16.837 20.071 Atomic orbital electron populations 1.22232 0.96802 1.01483 1.02257 1.21421 0.93388 0.84047 1.02903 1.47936 1.64703 1.13293 1.07002 1.19610 0.97147 0.93392 0.80122 1.21333 0.95386 1.32778 1.07012 0.90915 1.24850 0.94984 0.95810 0.97363 1.69898 1.15149 1.45114 1.23588 0.86849 0.81487 0.81648 0.79696 1.19902 1.21125 1.19085 1.20139 0.78579 0.87107 0.84658 1.90657 1.44631 1.17619 1.86867 1.22257 1.02108 0.94683 0.91134 1.64458 1.14718 1.42112 1.00159 1.22867 0.87014 1.02812 0.95940 1.22428 0.97456 1.02048 0.95067 1.22605 0.94992 1.01186 0.97022 1.22848 0.95334 0.96302 0.89708 0.93242 1.20947 0.94860 0.96941 0.97147 1.21843 1.01315 0.99935 0.97280 1.21822 1.00108 0.95339 1.02729 0.92984 0.92204 0.92064 0.89823 0.91694 0.95408 0.94628 0.92612 0.88625 0.92592 0.94130 0.88824 0.91925 0.91090 0.91514 0.89990 0.91455 0.93029 0.92592 0.92681 0.90744 0.93709 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.68 5.96 -4.04 -0.02 1.65 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.37 16 5 C -0.53 -15.25 9.94 -34.44 -0.34 -15.60 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.53 7.39 -10.99 -0.08 10.45 16 14 O -0.52 -13.01 14.57 5.55 0.08 -12.93 16 15 C 0.03 0.46 3.83 -4.97 -0.02 0.44 16 16 N -0.49 -7.36 4.01 -224.06 -0.90 -8.25 16 17 C 0.04 0.65 5.66 -2.75 -0.02 0.63 16 18 C -0.13 -1.57 6.93 -25.37 -0.18 -1.75 16 19 C -0.12 -1.26 5.63 -24.87 -0.14 -1.40 16 20 C 0.07 0.76 2.06 -65.79 -0.14 0.63 16 21 H 0.05 0.56 8.02 -51.93 -0.42 0.14 16 22 C -0.08 -0.82 2.87 -90.63 -0.26 -1.08 16 23 C -0.15 -1.18 9.06 37.15 0.34 -0.85 16 24 C -0.14 -1.53 8.43 37.16 0.31 -1.22 16 25 H 0.05 0.63 7.34 -51.93 -0.38 0.25 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 30 H 0.03 0.66 7.13 -51.92 -0.37 0.29 16 31 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.10 1.28 6.43 -51.93 -0.33 0.95 16 34 H 0.06 0.81 6.97 -51.93 -0.36 0.44 16 35 H 0.04 0.67 7.63 -51.93 -0.40 0.27 16 36 H 0.09 1.75 7.31 -51.93 -0.38 1.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.08 0.86 5.65 -51.93 -0.29 0.57 16 41 H 0.07 0.72 7.28 -51.92 -0.38 0.34 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.43 7.54 -51.93 -0.39 0.04 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 1.00 7.55 -51.93 -0.39 0.61 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.51 6.39 -51.93 -0.33 0.18 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -33.27 358.82 -8.52 -41.78 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.50 Total: -0.78 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.28 Total: -2.47 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.55 Total: -48.20 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.27 -8.52 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357665678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.679 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds