Wall clock time and date at job start Tue Mar 31 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.46847 * 2 1 4 4 C 1.46896 * 111.00428 * 296.65614 * 3 2 1 5 5 C 1.50699 * 109.47193 * 288.57475 * 4 3 2 6 6 H 1.08000 * 119.99829 * 1.02872 * 5 4 3 7 7 C 1.37876 * 120.00141 * 181.03477 * 5 4 3 8 8 N 1.31518 * 120.00249 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99855 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46956 * 90.00372 * 9 7 5 11 11 H 1.48497 * 109.47148 * 210.00299 * 9 7 5 12 12 H 1.48501 * 109.47148 * 330.00200 * 9 7 5 13 13 C 1.46904 * 110.99937 * 60.61152 * 3 2 1 14 14 C 1.50699 * 109.47007 * 66.04266 * 13 3 2 15 15 O 1.21286 * 120.00101 * 0.02562 * 14 13 3 16 16 N 1.34781 * 120.00251 * 180.02562 * 14 13 3 17 17 C 1.46921 * 120.62787 * 359.97438 * 16 14 13 18 18 C 1.53194 * 108.77874 * 233.63127 * 17 16 14 19 19 H 1.08997 * 109.52767 * 185.39589 * 18 17 16 20 20 C 1.53004 * 109.49588 * 65.31748 * 18 17 16 21 21 C 1.53039 * 109.30985 * 305.36834 * 18 17 16 22 22 C 1.53033 * 109.54090 * 61.36349 * 21 18 17 23 23 H 1.09003 * 109.49933 * 58.58355 * 22 21 18 24 24 C 1.52997 * 109.49975 * 178.68379 * 22 21 18 25 25 C 1.46929 * 120.63173 * 179.97438 * 16 14 13 26 26 H 1.08997 * 109.47017 * 298.23950 * 1 2 3 27 27 H 1.09000 * 109.47420 * 58.23511 * 1 2 3 28 28 H 1.09000 * 109.47223 * 178.23849 * 1 2 3 29 29 H 1.08997 * 109.46885 * 240.00430 * 2 1 3 30 30 H 1.08994 * 109.46894 * 120.00317 * 2 1 3 31 31 H 1.09000 * 109.46985 * 48.57506 * 4 3 2 32 32 H 1.09001 * 109.47152 * 168.57544 * 4 3 2 33 33 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46899 * 306.04701 * 13 3 2 35 35 H 1.08997 * 109.47145 * 186.03714 * 13 3 2 36 36 H 1.09005 * 109.58806 * 113.83943 * 17 16 14 37 37 H 1.09001 * 109.58798 * 353.42158 * 17 16 14 38 38 H 1.08997 * 109.46996 * 300.16438 * 20 18 17 39 39 H 1.09000 * 109.47164 * 180.16527 * 20 18 17 40 40 H 1.09001 * 109.47082 * 60.16386 * 20 18 17 41 41 H 1.09002 * 109.45782 * 181.38323 * 21 18 17 42 42 H 1.08997 * 109.45762 * 301.34143 * 21 18 17 43 43 H 1.08997 * 109.47380 * 59.99392 * 24 22 21 44 44 H 1.09002 * 109.47145 * 180.02562 * 24 22 21 45 45 H 1.09007 * 109.47075 * 299.99642 * 24 22 21 46 46 H 1.08996 * 109.58564 * 6.58465 * 25 16 14 47 47 H 1.08997 * 109.69898 * 246.22149 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6150 2.0865 -1.2256 5 6 2.4021 1.5511 -2.3939 6 1 3.1181 0.7566 -2.2440 7 6 2.2082 2.0757 -3.6542 8 7 2.8947 1.6081 -4.6739 9 14 0.9694 3.4495 -3.9135 10 1 1.6425 4.7619 -3.7416 11 1 0.4077 3.3572 -5.2850 12 1 -0.1269 3.3216 -2.9200 13 6 1.5605 2.1056 1.1950 14 6 2.1950 1.5010 2.4209 15 8 2.9552 0.5625 2.3100 16 7 1.9178 2.0031 3.6405 17 6 0.9994 3.1401 3.7908 18 6 1.7025 4.2391 4.5937 19 1 1.0010 5.0488 4.7949 20 6 2.8882 4.7786 3.7911 21 6 2.2040 3.6570 5.9172 22 6 3.2145 2.5427 5.6360 23 1 4.0450 2.9429 5.0544 24 6 3.7398 1.9836 6.9597 25 6 2.5282 1.4240 4.8450 26 1 -0.3633 0.4862 0.9053 27 1 -0.3634 0.5410 -0.8737 28 1 -0.3634 -1.0272 -0.0316 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5510 1.9275 -1.4008 32 1 1.8096 3.1532 -1.1147 33 1 2.7579 1.9769 -5.5606 34 1 0.4760 2.0283 1.2716 35 1 1.8456 3.1549 1.1184 36 1 0.1025 2.8179 4.3200 37 1 0.7279 3.5230 2.8071 38 1 3.5889 3.9684 3.5891 39 1 3.3900 5.5585 4.3639 40 1 2.5305 5.1931 2.8486 41 1 2.6831 4.4428 6.5011 42 1 1.3619 3.2507 6.4774 43 1 2.9089 1.5824 7.5399 44 1 4.4599 1.1903 6.7589 45 1 4.2254 2.7803 7.5235 46 1 3.2654 0.6747 4.5568 47 1 1.7575 0.9605 5.4609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357900138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:29 Heat of formation + Delta-G solvation = -34.486994 kcal Electronic energy + Delta-G solvation = -23806.475395 eV Core-core repulsion = 20603.145811 eV Total energy + Delta-G solvation = -3203.329583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42530 -38.28031 -36.48334 -33.96185 -33.14115 -32.47171 -29.90170 -28.91277 -27.16405 -26.94342 -25.97265 -24.49422 -22.78181 -21.83147 -20.28234 -19.34986 -18.28922 -16.98220 -16.67859 -15.82623 -15.77847 -15.07503 -14.98088 -14.46585 -14.35949 -14.27577 -14.01434 -13.46671 -13.33796 -13.10594 -12.74436 -12.47088 -12.25932 -12.21499 -11.96507 -11.84603 -11.75079 -11.57661 -11.41391 -11.26201 -11.00435 -10.93439 -10.74754 -10.63455 -10.52758 -10.36750 -10.06890 -9.88121 -9.33504 -9.11601 -8.53429 -8.52570 -7.25720 -6.00508 -3.96941 2.93423 3.04519 3.28780 3.36225 3.36654 4.37739 4.43951 4.50963 4.58849 4.71356 4.80120 4.94476 5.00688 5.17287 5.29169 5.30810 5.36214 5.38623 5.42870 5.48472 5.51818 5.60164 5.63888 5.68143 5.73657 5.81260 5.85545 5.85661 5.93077 5.96912 6.03163 6.06493 6.09029 6.27187 6.40350 6.48452 6.60443 6.87307 6.96864 7.11058 7.46954 7.64667 7.94700 8.06150 8.52356 8.71152 9.11556 9.60744 11.12941 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.004270 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.587465 B = 6556.073093 C = 7001.673691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 N -0.506 5.506 4 C 0.159 3.841 5 C -0.503 4.503 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.032 3.968 14 C 0.519 3.481 15 O -0.516 6.516 16 N -0.619 5.619 17 C 0.111 3.889 18 C -0.108 4.108 19 H 0.080 0.920 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.110 4.110 23 H 0.079 0.921 24 C -0.144 4.144 25 C 0.118 3.882 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.076 0.924 31 H -0.003 1.003 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 5.315 23.180 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.075 4.075 3 N -0.230 5.230 4 C 0.033 3.967 5 C -0.541 4.541 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.100 4.100 14 C 0.308 3.692 15 O -0.390 6.390 16 N -0.355 5.355 17 C -0.012 4.012 18 C -0.127 4.127 19 H 0.098 0.902 20 C -0.207 4.207 21 C -0.145 4.145 22 C -0.129 4.129 23 H 0.097 0.903 24 C -0.202 4.202 25 C -0.004 4.004 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.015 0.985 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.349 4.792 22.884 23.781 hybrid contribution -1.629 1.004 -0.254 1.930 sum -5.979 5.796 22.630 24.113 Atomic orbital electron populations 1.22435 1.00027 1.01416 1.01031 1.22178 0.91155 0.90693 1.03458 1.61930 1.58838 1.01910 1.00286 1.20280 0.94834 0.93754 0.87859 1.21014 1.22512 1.20755 0.89825 0.90030 1.24889 0.95844 0.96672 0.95968 1.69898 1.41434 1.42773 0.99888 0.86900 0.82297 0.83176 0.77580 1.20210 1.21236 1.19352 1.22052 0.97728 0.99377 0.90812 1.20877 0.81299 0.83218 0.83819 1.90646 1.35189 1.27731 1.85453 1.48120 1.47264 1.33901 1.06233 1.21762 0.91789 0.86281 1.01369 1.21507 0.98160 0.97385 0.95623 0.90152 1.21878 0.98085 1.01013 0.99752 1.21598 0.98688 0.97761 0.96484 1.21570 0.98623 0.96020 0.96732 0.90262 1.21760 1.01003 1.01055 0.96404 1.21557 0.97657 0.95741 0.85480 0.94138 0.91843 0.92901 0.89661 0.90587 0.98508 0.96184 0.92729 0.92720 0.88809 0.91603 0.89550 0.91914 0.92759 0.92482 0.91786 0.91914 0.92658 0.92369 0.92496 0.89072 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 9.26 37.16 0.34 -3.03 16 2 C 0.05 1.11 5.58 -3.82 -0.02 1.08 16 3 N -0.51 -11.08 4.40 -237.52 -1.04 -12.13 16 4 C 0.16 3.84 3.66 -4.98 -0.02 3.82 16 5 C -0.50 -14.52 9.11 -34.44 -0.31 -14.83 16 6 H 0.08 2.62 7.70 -52.49 -0.40 2.21 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.87 21.38 27.45 -169.99 -4.67 16.71 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.25 6.57 56.52 0.37 -5.88 16 13 C 0.03 0.55 3.56 -4.97 -0.02 0.53 16 14 C 0.52 8.67 7.42 -10.98 -0.08 8.59 16 15 O -0.52 -10.57 13.73 5.55 0.08 -10.49 16 16 N -0.62 -7.76 2.41 -172.74 -0.42 -8.17 16 17 C 0.11 1.06 5.74 -3.71 -0.02 1.04 16 18 C -0.11 -0.88 3.21 -90.50 -0.29 -1.17 16 19 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 20 C -0.15 -1.44 8.70 37.16 0.32 -1.11 16 21 C -0.11 -0.82 4.71 -26.69 -0.13 -0.94 16 22 C -0.11 -0.99 2.53 -90.48 -0.23 -1.22 16 23 H 0.08 0.83 6.34 -51.93 -0.33 0.50 16 24 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 25 C 0.12 1.31 5.72 -3.69 -0.02 1.29 16 26 H 0.04 0.64 6.38 -51.93 -0.33 0.31 16 27 H 0.06 1.22 6.18 -51.93 -0.32 0.90 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.97 7.15 -51.93 -0.37 1.60 16 30 H 0.08 1.58 5.87 -51.93 -0.30 1.27 16 31 H 0.00 -0.06 5.01 -51.93 -0.26 -0.32 16 32 H 0.02 0.48 7.19 -51.93 -0.37 0.11 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.06 0.85 5.85 -51.93 -0.30 0.55 16 35 H 0.09 1.50 7.42 -51.93 -0.39 1.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.83 5.93 -51.93 -0.31 0.52 16 38 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 46 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -32.78 348.45 -8.43 -41.22 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.18 Total: -0.44 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.23 Total: -4.80 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.69 Total: -47.44 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.78 -8.43 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357900138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.728 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds