Wall clock time and date at job start Tue Mar 31 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46895 * 109.47257 * 2 1 4 4 C 1.46897 * 111.00458 * 297.51626 * 3 2 1 5 5 C 1.50702 * 109.47313 * 292.34802 * 4 3 2 6 6 H 1.08002 * 119.99310 * 354.95450 * 5 4 3 7 7 C 1.37870 * 120.00182 * 174.95467 * 5 4 3 8 8 N 1.31506 * 120.00155 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99698 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47071 * 60.00388 * 9 7 5 11 11 H 1.48497 * 109.47156 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47561 * 300.00218 * 9 7 5 13 13 C 1.46904 * 110.99880 * 61.46939 * 3 2 1 14 14 C 1.50701 * 109.46974 * 66.04154 * 13 3 2 15 15 O 1.21282 * 120.00451 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99817 * 180.02562 * 14 13 3 17 17 C 1.46497 * 120.00191 * 0.02562 * 16 14 13 18 18 C 1.46500 * 119.99971 * 180.02562 * 16 14 13 19 19 C 1.53006 * 109.46669 * 240.00142 * 18 16 14 20 20 C 1.53000 * 109.46857 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47244 * 59.99711 * 20 19 18 22 22 C 1.53001 * 109.47109 * 300.00041 * 21 20 19 23 23 C 1.52995 * 109.47341 * 60.00114 * 22 21 20 24 24 H 1.09003 * 109.47075 * 299.07915 * 1 2 3 25 25 H 1.09002 * 109.47422 * 59.08272 * 1 2 3 26 26 H 1.09007 * 109.47211 * 179.08440 * 1 2 3 27 27 H 1.09009 * 109.47112 * 240.00530 * 2 1 3 28 28 H 1.08997 * 109.47471 * 120.00546 * 2 1 3 29 29 H 1.08996 * 109.47099 * 52.34329 * 4 3 2 30 30 H 1.08998 * 109.47350 * 172.34333 * 4 3 2 31 31 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46739 * 306.04877 * 13 3 2 33 33 H 1.08993 * 109.47535 * 186.04709 * 13 3 2 34 34 H 1.09011 * 109.47239 * 270.00134 * 17 16 14 35 35 H 1.08999 * 109.47265 * 29.99545 * 17 16 14 36 36 H 1.08992 * 109.47334 * 150.00132 * 17 16 14 37 37 H 1.09003 * 109.46910 * 359.97438 * 18 16 14 38 38 H 1.09003 * 109.46824 * 299.99280 * 19 18 16 39 39 H 1.08996 * 109.47317 * 60.00098 * 19 18 16 40 40 H 1.09002 * 109.47110 * 299.99782 * 20 19 18 41 41 H 1.08995 * 109.47386 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.46888 * 179.97438 * 21 20 19 43 43 H 1.08993 * 109.47028 * 60.00212 * 21 20 19 44 44 H 1.09002 * 109.47158 * 299.99876 * 22 21 20 45 45 H 1.09002 * 109.47137 * 180.02562 * 22 21 20 46 46 H 1.08995 * 109.47272 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.47188 * 59.99781 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5978 2.0926 -1.2162 5 6 2.2999 1.5004 -2.4110 6 1 3.0504 0.7362 -2.2723 7 6 1.9841 1.9341 -3.6811 8 7 1.0699 2.8642 -3.8500 9 14 2.8549 1.2005 -5.1619 10 1 2.6035 -0.2623 -5.2096 11 1 2.3391 1.8325 -6.4028 12 1 4.3149 1.4484 -5.0508 13 6 1.5775 2.0996 1.2049 14 6 2.2292 1.4888 2.4187 15 8 2.9876 0.5508 2.2925 16 7 1.9692 1.9849 3.6446 17 6 1.0526 3.1175 3.7972 18 6 2.6031 1.3915 4.8246 19 6 1.5237 0.8682 5.7744 20 6 2.1857 0.2479 7.0064 21 6 3.0250 1.3079 7.7225 22 6 4.1043 1.8311 6.7726 23 6 3.4424 2.4515 5.5406 24 1 -0.3633 0.4995 0.8982 25 1 -0.3634 0.5280 -0.8816 26 1 -0.3634 -1.0276 -0.0164 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.5198 1.9902 -1.3407 30 1 1.8550 3.1483 -1.1301 31 1 0.8480 3.1697 -4.7435 32 1 0.4941 2.0219 1.2964 33 1 1.8614 3.1492 1.1296 34 1 1.6143 4.0499 3.7388 35 1 0.3077 3.0918 3.0020 36 1 0.5541 3.0537 4.7643 37 1 3.2456 0.5669 4.5157 38 1 0.8809 1.6926 6.0833 39 1 0.9261 0.1127 5.2644 40 1 2.8283 -0.5765 6.6972 41 1 1.4168 -0.1253 7.6829 42 1 3.4963 0.8660 8.6005 43 1 2.3825 2.1322 8.0317 44 1 4.7469 1.0067 6.4634 45 1 4.7026 2.5859 7.2829 46 1 4.2113 2.8238 4.8638 47 1 2.7998 3.2759 5.8498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357931948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:43 Heat of formation + Delta-G solvation = -42.888230 kcal Electronic energy + Delta-G solvation = -23388.387560 eV Core-core repulsion = 20184.693672 eV Total energy + Delta-G solvation = -3203.693888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15728 -38.29288 -36.42702 -34.89137 -32.54349 -30.97372 -30.52610 -29.40035 -27.88186 -26.75788 -25.12751 -23.08537 -22.81140 -22.38950 -20.12050 -19.58247 -18.58358 -16.80227 -16.35870 -16.02728 -15.70922 -14.99098 -14.67622 -14.61027 -14.33439 -14.21264 -13.98972 -13.41555 -13.04373 -12.88046 -12.68783 -12.55861 -12.37694 -12.31390 -12.18353 -11.68790 -11.45463 -11.33548 -11.31241 -11.11652 -10.89918 -10.81176 -10.73417 -10.52400 -10.46611 -10.43321 -9.96136 -9.86181 -9.32939 -8.98673 -8.48366 -8.38774 -7.10499 -5.98939 -3.99027 3.01494 3.08577 3.37900 3.40841 3.45435 4.45153 4.47511 4.56878 4.68794 4.83594 5.01706 5.03750 5.07423 5.17737 5.24662 5.28893 5.30220 5.36786 5.41246 5.45938 5.53997 5.64926 5.77518 5.80617 5.82091 5.83992 5.90298 5.93438 5.96688 6.01110 6.11594 6.16384 6.23014 6.23966 6.53082 6.69186 6.75820 7.05810 7.30908 7.45576 7.54253 7.87181 8.12243 8.25076 8.54079 8.63717 9.09572 9.64892 11.11837 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034402 B = 0.003389 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.712402 B = 8260.138383 C = 8306.248557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.518 5.518 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.036 3.964 14 C 0.517 3.483 15 O -0.519 6.519 16 N -0.623 5.623 17 C 0.078 3.922 18 C 0.141 3.859 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.126 4.126 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.004 0.996 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -0.220 22.591 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.242 5.242 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.096 4.096 14 C 0.306 3.694 15 O -0.393 6.393 16 N -0.358 5.358 17 C -0.066 4.066 18 C 0.037 3.963 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.165 4.165 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.301 -0.632 22.330 22.341 hybrid contribution -0.653 -0.045 -0.858 1.079 sum -0.954 -0.677 21.473 21.505 Atomic orbital electron populations 1.22416 0.99983 1.01012 1.01362 1.22110 0.91282 0.91100 1.02736 1.62085 1.59174 1.01994 1.00945 1.19820 0.94862 0.93604 0.85264 1.21117 1.21240 1.21730 0.89996 0.91826 1.24961 0.95341 0.95299 0.98986 1.69941 1.32077 1.29668 1.22475 0.86562 0.79999 0.79271 0.81604 1.20267 1.21446 1.20170 1.22004 0.97595 0.99406 0.90592 1.21034 0.81380 0.83133 0.83853 1.90621 1.35593 1.27801 1.85289 1.47998 1.47146 1.34364 1.06294 1.21743 0.93369 0.88806 1.02675 1.21003 0.94210 0.96502 0.84571 1.21882 0.98086 1.00601 0.95977 1.21495 0.99228 0.98261 0.96492 1.21555 0.97559 0.98636 0.97982 1.21500 0.97764 1.00564 0.95686 1.21866 0.99416 0.98218 0.96964 0.94304 0.91361 0.93360 0.90184 0.91097 0.97808 0.95807 0.92960 0.92696 0.88843 0.92708 0.90872 0.91344 0.88235 0.91770 0.91670 0.91704 0.91854 0.92039 0.92059 0.91705 0.91822 0.91536 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.57 9.26 37.15 0.34 -3.23 16 2 C 0.06 1.20 5.55 -3.83 -0.02 1.18 16 3 N -0.52 -11.77 4.43 -237.52 -1.05 -12.82 16 4 C 0.19 4.93 4.54 -4.98 -0.02 4.91 16 5 C -0.50 -14.36 8.40 -34.44 -0.29 -14.65 16 6 H 0.06 1.84 7.42 -52.49 -0.39 1.45 16 7 C 0.05 1.57 5.46 -17.83 -0.10 1.48 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.04 0.65 3.78 -4.97 -0.02 0.63 16 14 C 0.52 8.99 7.39 -10.98 -0.08 8.91 16 15 O -0.52 -10.85 13.65 5.56 0.08 -10.78 16 16 N -0.62 -8.17 2.76 -173.93 -0.48 -8.65 16 17 C 0.08 0.76 9.30 59.85 0.56 1.31 16 18 C 0.14 1.64 2.52 -67.93 -0.17 1.46 16 19 C -0.13 -1.20 5.18 -26.73 -0.14 -1.34 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -0.87 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 23 C -0.13 -1.23 5.21 -26.73 -0.14 -1.37 16 24 H 0.04 0.66 6.35 -51.93 -0.33 0.33 16 25 H 0.07 1.45 6.26 -51.93 -0.32 1.12 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.86 7.01 -51.92 -0.36 1.49 16 28 H 0.07 1.50 5.86 -51.93 -0.30 1.20 16 29 H 0.00 0.11 5.99 -51.93 -0.31 -0.20 16 30 H 0.02 0.65 7.90 -51.93 -0.41 0.24 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 0.93 5.32 -51.93 -0.28 0.65 16 33 H 0.09 1.62 7.88 -51.93 -0.41 1.21 16 34 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16 36 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 37 H 0.10 1.42 6.90 -51.93 -0.36 1.06 16 38 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -32.00 353.15 -9.22 -41.23 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.25 Total: -1.36 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.55 Total: -3.95 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.80 Total: -47.48 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.00 -9.22 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357931948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.663 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds