Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.46907 * 2 1 4 4 C 1.46904 * 110.99959 * 76.64875 * 3 2 1 5 5 C 1.52992 * 109.47155 * 200.22824 * 4 3 2 6 6 C 1.53000 * 109.47417 * 185.32353 * 5 4 3 7 7 C 1.53349 * 109.41762 * 295.13156 * 6 5 4 8 8 C 1.53195 * 109.15018 * 178.67034 * 7 6 5 9 9 N 1.46925 * 108.89060 * 54.57785 * 8 7 6 10 10 C 1.36937 * 120.63014 * 126.29878 * 9 8 7 11 11 H 1.07994 * 120.00343 * 325.46158 * 10 9 8 12 12 C 1.38815 * 119.99919 * 145.46320 * 10 9 8 13 13 N 1.31622 * 120.00244 * 344.10174 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 164.10077 * 12 10 9 15 15 H 1.48501 * 109.46885 * 60.00096 * 14 12 10 16 16 H 1.48501 * 109.47169 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47150 * 300.00062 * 14 12 10 18 18 C 1.46927 * 118.73880 * 306.31846 * 9 8 7 19 19 C 1.53032 * 109.46257 * 175.00337 * 6 5 4 20 20 C 1.46900 * 110.99806 * 200.60024 * 3 2 1 21 21 C 1.52999 * 109.47031 * 66.05006 * 20 3 2 22 22 C 1.53004 * 109.47391 * 64.99671 * 21 20 3 23 23 C 1.53000 * 109.47085 * 184.99541 * 21 20 3 24 24 H 1.08995 * 109.46742 * 178.56389 * 1 2 3 25 25 H 1.08993 * 109.47252 * 298.56932 * 1 2 3 26 26 H 1.08998 * 109.47224 * 58.57029 * 1 2 3 27 27 H 1.09003 * 109.47346 * 240.00314 * 2 1 3 28 28 H 1.09002 * 109.47605 * 119.99826 * 2 1 3 29 29 H 1.09003 * 109.46934 * 80.22715 * 4 3 2 30 30 H 1.09001 * 109.46934 * 320.23212 * 4 3 2 31 31 H 1.09003 * 109.47106 * 65.32709 * 5 4 3 32 32 H 1.08996 * 109.47528 * 305.32936 * 5 4 3 33 33 H 1.08999 * 109.45785 * 55.02987 * 6 5 4 34 34 H 1.09000 * 109.68692 * 58.70614 * 7 6 5 35 35 H 1.08996 * 109.47735 * 298.50888 * 7 6 5 36 36 H 1.09003 * 109.58640 * 294.72108 * 8 7 6 37 37 H 1.08994 * 109.58733 * 174.43375 * 8 7 6 38 38 H 0.96994 * 120.00524 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.58343 * 173.39653 * 18 9 8 40 40 H 1.08993 * 109.58680 * 293.67833 * 18 9 8 41 41 H 1.08994 * 109.50200 * 61.43592 * 19 6 5 42 42 H 1.09001 * 109.52743 * 301.35165 * 19 6 5 43 43 H 1.09007 * 109.46998 * 186.04205 * 20 3 2 44 44 H 1.08994 * 109.47720 * 306.04605 * 20 3 2 45 45 H 1.08998 * 109.47241 * 305.00116 * 21 20 3 46 46 H 1.09001 * 109.47357 * 59.99587 * 22 21 20 47 47 H 1.08997 * 109.47131 * 180.02562 * 22 21 20 48 48 H 1.09000 * 109.46628 * 300.00094 * 22 21 20 49 49 H 1.08993 * 109.47158 * 60.00225 * 23 21 20 50 50 H 1.09005 * 109.46855 * 179.97438 * 23 21 20 51 51 H 1.08998 * 109.47516 * 299.99829 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8965 1.9870 1.3344 5 6 1.9230 3.5116 1.2106 6 6 1.9285 4.1368 2.6070 7 6 0.6108 3.8070 3.3185 8 6 0.6365 4.4074 4.7276 9 7 0.9268 5.8442 4.6273 10 6 0.1001 6.7655 5.2128 11 1 -0.9642 6.5869 5.2543 12 6 0.6301 7.9292 5.7532 13 7 1.9220 8.0162 5.9895 14 14 -0.4902 9.3717 6.1449 15 1 -1.5128 8.9495 7.1355 16 1 0.3149 10.4848 6.7090 17 1 -1.1633 9.8274 4.9021 18 6 2.1206 6.2736 3.8863 19 6 2.0806 5.6547 2.4855 20 6 3.4054 1.4535 -0.4825 21 6 3.4522 1.0510 -1.9579 22 6 2.6822 2.0774 -2.7913 23 6 4.9076 1.0016 -2.4272 24 1 -0.3632 -1.0273 -0.0258 25 1 -0.3633 0.4914 0.9025 26 1 -0.3633 0.5359 -0.8769 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.7272 1.6587 1.9591 30 1 0.9556 1.6755 1.7880 31 1 1.0405 3.8473 0.6658 32 1 2.8202 3.8170 0.6722 33 1 2.7619 3.7332 3.1822 34 1 0.4905 2.7257 3.3859 35 1 -0.2215 4.2317 2.7572 36 1 1.4107 3.9186 5.3190 37 1 -0.3331 4.2629 5.2041 38 1 2.2924 8.8294 6.3667 39 1 2.1291 7.3606 3.8055 40 1 3.0159 5.9392 4.4104 41 1 1.2347 6.0620 1.9319 42 1 3.0061 5.8871 1.9586 43 1 3.7789 2.4716 -0.3718 44 1 4.0269 0.7732 0.0996 45 1 2.9971 0.0682 -2.0810 46 1 3.1371 3.0603 -2.6682 47 1 2.7151 1.7903 -3.8423 48 1 1.6453 2.1125 -2.4569 49 1 5.4561 0.2704 -1.8336 50 1 4.9409 0.7144 -3.4782 51 1 5.3626 1.9844 -2.3042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358743107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = -9.742115 kcal Electronic energy + Delta-G solvation = -23424.109008 eV Core-core repulsion = 20357.685538 eV Total energy + Delta-G solvation = -3066.423470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.92553 -37.55088 -35.04642 -33.78718 -31.61560 -30.47325 -29.83006 -28.26455 -27.23460 -25.70921 -24.46726 -22.99572 -22.14226 -21.25156 -20.35448 -19.72359 -18.97929 -16.66640 -16.09314 -15.56331 -15.15441 -14.79497 -14.28620 -14.09788 -13.79856 -13.64695 -13.42592 -13.35532 -13.14233 -12.82583 -12.53378 -12.37039 -12.20917 -12.05345 -11.83310 -11.72012 -11.39848 -11.32067 -11.18398 -11.06000 -10.98128 -10.89873 -10.68497 -10.48300 -10.40796 -10.29924 -10.09592 -10.05117 -9.80166 -9.34262 -9.21891 -8.41081 -8.32152 -6.49597 -5.73451 -3.21574 3.41202 3.46415 3.48211 3.80545 4.54157 4.60649 4.79171 4.87322 5.00196 5.09901 5.19040 5.33167 5.35387 5.40952 5.42175 5.49727 5.50650 5.55299 5.58270 5.65514 5.68330 5.75399 5.76998 5.83279 5.85853 5.93082 5.94981 5.97045 6.14691 6.16972 6.20802 6.25145 6.31584 6.32050 6.45102 6.50170 6.64095 6.74436 6.82147 6.94808 6.99173 7.09395 7.11861 7.13025 7.42947 7.68154 7.86407 8.55873 9.28838 9.91030 10.52973 11.34519 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.003214 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.040065 B = 8710.856047 C = 9182.098751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.537 5.537 4 C 0.055 3.945 5 C -0.104 4.104 6 C -0.077 4.077 7 C -0.126 4.126 8 C 0.145 3.855 9 N -0.591 5.591 10 C -0.257 4.257 11 H 0.060 0.940 12 C 0.008 3.992 13 N -0.900 5.900 14 Si 0.900 3.100 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.176 3.824 19 C -0.133 4.133 20 C 0.057 3.943 21 C -0.094 4.094 22 C -0.137 4.137 23 C -0.148 4.148 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.067 0.933 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -15.663 -15.368 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.072 4.072 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.165 4.165 8 C 0.019 3.981 9 N -0.314 5.314 10 C -0.387 4.387 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.543 5.543 14 Si 0.730 3.270 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.209 1.209 18 C 0.050 3.950 19 C -0.172 4.172 20 C -0.071 4.071 21 C -0.113 4.113 22 C -0.195 4.195 23 C -0.206 4.206 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.633 -15.248 -15.589 21.964 hybrid contribution 0.084 0.318 0.849 0.910 sum 2.716 -14.930 -14.740 21.155 Atomic orbital electron populations 1.21758 0.94938 1.00985 1.02677 1.22135 0.96242 0.89369 1.00440 1.62021 1.20609 1.17556 1.25880 1.22252 1.00960 0.95822 0.88214 1.21619 1.01876 0.93166 0.97540 1.21074 0.97908 0.96326 0.94331 1.22126 0.97013 0.98392 0.98986 1.20909 0.98100 0.86254 0.92872 1.43950 1.27927 0.99675 1.59806 1.19069 0.89082 0.99077 1.31454 0.92223 1.25200 0.95868 1.00243 0.97843 1.70027 1.11209 1.26989 1.46099 0.86415 0.80027 0.82352 0.78207 1.20833 1.21657 1.20943 1.20647 0.88571 0.98908 0.86906 1.22189 0.99800 0.94464 1.00793 1.22221 0.88773 1.01442 0.94622 1.21169 0.95737 0.99704 0.94662 1.21710 1.01371 0.98293 0.98098 1.21830 0.96017 1.01843 1.00864 0.92786 0.92549 0.91992 0.90976 0.95101 0.95036 0.90601 0.91704 0.92669 0.92384 0.93480 0.92506 0.96866 0.93157 0.93649 0.90938 0.96501 0.92780 0.93646 0.90410 0.95301 0.91388 0.93033 0.93749 0.91414 0.93020 0.92662 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.02 37.16 0.37 -0.98 16 2 C 0.05 0.44 5.55 -3.82 -0.02 0.42 16 3 N -0.54 -5.91 3.81 -234.62 -0.89 -6.80 16 4 C 0.05 0.68 4.43 -3.83 -0.02 0.66 16 5 C -0.10 -1.46 4.86 -26.74 -0.13 -1.59 16 6 C -0.08 -1.31 2.15 -90.42 -0.19 -1.50 16 7 C -0.13 -2.23 5.16 -26.45 -0.14 -2.37 16 8 C 0.14 3.16 6.50 -3.71 -0.02 3.13 16 9 N -0.59 -15.27 2.95 -172.32 -0.51 -15.78 16 10 C -0.26 -7.25 9.51 -15.06 -0.14 -7.40 16 11 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 12 C 0.01 0.23 4.89 -17.43 -0.09 0.14 16 13 N -0.90 -26.74 11.63 55.49 0.65 -26.10 16 14 Si 0.90 22.03 29.58 -169.99 -5.03 17.01 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.18 4.29 5.27 -3.71 -0.02 4.27 16 19 C -0.13 -2.59 5.36 -26.61 -0.14 -2.74 16 20 C 0.06 0.59 4.17 -3.82 -0.02 0.57 16 21 C -0.09 -0.82 2.86 -90.62 -0.26 -1.08 16 22 C -0.14 -1.26 9.08 37.16 0.34 -0.93 16 23 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 6.84 -51.93 -0.36 0.21 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.63 5.81 -51.93 -0.30 0.33 16 28 H 0.03 0.31 7.99 -51.93 -0.41 -0.11 16 29 H 0.03 0.40 7.99 -51.93 -0.41 -0.01 16 30 H 0.08 0.96 5.22 -51.93 -0.27 0.69 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.76 6.69 -51.93 -0.35 0.41 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.72 6.64 -51.93 -0.34 0.38 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 39 H 0.07 1.97 6.54 -51.93 -0.34 1.63 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.86 6.60 -51.92 -0.34 0.52 16 44 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 45 H 0.07 0.59 6.08 -51.93 -0.32 0.27 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -29.21 378.68 -10.37 -39.57 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -10.15 Total: -3.43 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.14 Total: -10.18 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.76 Total: -48.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.21 -10.37 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358743107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.832 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds