Wall clock time and date at job start Tue Mar 31 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00035 * 2 1 4 4 C 1.46900 * 111.00031 * 123.94910 * 2 1 3 5 5 C 1.53002 * 109.46971 * 58.51520 * 4 2 1 6 6 N 1.46504 * 109.46958 * 54.91814 * 5 4 2 7 7 C 1.34773 * 119.99700 * 175.11006 * 6 5 4 8 8 O 1.21274 * 120.00242 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47051 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.07993 * 119.99707 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99805 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00341 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46814 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47322 * 119.99553 * 15 13 11 18 18 H 1.48500 * 109.47540 * 240.00213 * 15 13 11 19 19 C 1.52998 * 109.47154 * 298.51764 * 4 2 1 20 20 C 1.53006 * 109.47099 * 180.02562 * 19 4 2 21 21 C 1.52999 * 109.47225 * 59.99666 * 20 19 4 22 22 C 1.53003 * 109.46938 * 299.99879 * 21 20 19 23 23 C 1.52999 * 109.47070 * 178.51491 * 4 2 1 24 24 H 1.08995 * 109.47438 * 298.31285 * 1 2 3 25 25 H 1.09000 * 109.47112 * 58.31525 * 1 2 3 26 26 H 1.08997 * 109.46806 * 178.30850 * 1 2 3 27 27 H 1.09002 * 109.47682 * 183.95194 * 3 2 1 28 28 H 1.09001 * 109.47135 * 303.94969 * 3 2 1 29 29 H 1.09006 * 109.47374 * 63.94773 * 3 2 1 30 30 H 1.08999 * 109.47093 * 174.91726 * 5 4 2 31 31 H 1.08997 * 109.46971 * 294.92254 * 5 4 2 32 32 H 0.97001 * 120.00239 * 355.12164 * 6 5 4 33 33 H 1.09001 * 109.47165 * 300.00431 * 9 7 6 34 34 H 1.08993 * 109.47179 * 60.00221 * 9 7 6 35 35 H 1.09001 * 109.46878 * 299.99859 * 10 9 7 36 36 H 1.08993 * 109.47559 * 59.99706 * 10 9 7 37 37 H 0.97001 * 119.99692 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.46981 * 299.99506 * 19 4 2 39 39 H 1.09001 * 109.47479 * 59.99628 * 19 4 2 40 40 H 1.09001 * 109.46673 * 299.99538 * 20 19 4 41 41 H 1.08996 * 109.46910 * 179.97438 * 20 19 4 42 42 H 1.09002 * 109.46945 * 180.02562 * 21 20 19 43 43 H 1.08988 * 109.47137 * 60.00145 * 21 20 19 44 44 H 1.08996 * 109.47780 * 300.00137 * 22 21 20 45 45 H 1.09001 * 109.46573 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.47314 * 299.99893 * 23 4 2 47 47 H 1.09001 * 109.47399 * 60.00289 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.4748 -2.2030 1.0696 6 7 1.8113 -2.7831 -0.2330 7 6 1.5382 -4.0787 -0.4844 8 8 1.0135 -4.7642 0.3673 9 6 1.8849 -4.6756 -1.8241 10 6 1.4726 -6.1487 -1.8482 11 6 1.8187 -6.7454 -3.1881 12 1 2.2856 -6.1349 -3.9467 13 6 1.5392 -8.0708 -3.4453 14 7 0.9710 -8.8145 -2.5213 15 14 1.9675 -8.8103 -5.1064 16 1 2.5935 -7.7719 -5.9639 17 1 2.9179 -9.9355 -4.9171 18 1 0.7311 -9.3110 -5.7591 19 6 1.5353 -0.1182 2.4452 20 6 2.0841 -0.9156 3.6301 21 6 3.6131 -0.9233 3.5752 22 6 4.0732 -1.5711 2.2677 23 6 3.5244 -0.7742 1.0830 24 1 -0.3634 0.4874 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3633 -1.0272 -0.0303 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.9359 -2.7943 1.8607 31 1 0.3926 -2.2039 1.1990 32 1 2.2308 -2.2347 -0.9144 33 1 1.3547 -4.1373 -2.6099 34 1 2.9591 -4.5958 -1.9904 35 1 2.0025 -6.6872 -1.0624 36 1 0.3983 -6.2281 -1.6820 37 1 0.7741 -9.7468 -2.7025 38 1 1.9062 0.9056 2.4937 39 1 0.4460 -0.1122 2.4841 40 1 1.7136 -1.9395 3.5818 41 1 1.7567 -0.4539 4.5616 42 1 4.0041 -1.4918 4.4191 43 1 3.9836 0.1005 3.6235 44 1 3.7027 -2.5950 2.2193 45 1 5.1625 -1.5770 2.2288 46 1 3.8522 -1.2356 0.1516 47 1 3.8953 0.2496 1.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359843371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:15 Heat of formation + Delta-G solvation = -53.378532 kcal Electronic energy + Delta-G solvation = -23477.571236 eV Core-core repulsion = 20273.422454 eV Total energy + Delta-G solvation = -3204.148782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72309 -38.58693 -35.95322 -33.95951 -33.35634 -31.13251 -31.01410 -29.97351 -28.20368 -26.28901 -24.87722 -24.20731 -22.84333 -21.42029 -21.18568 -19.47998 -18.38964 -16.86167 -16.67001 -15.76117 -15.59015 -15.27656 -14.77852 -14.67460 -14.47337 -14.41044 -14.12061 -13.99719 -13.28114 -13.05874 -12.86938 -12.50957 -12.37587 -12.15452 -12.05010 -12.01339 -11.91947 -11.68339 -11.31827 -11.06782 -11.00025 -10.89115 -10.62316 -10.53652 -10.44029 -10.26477 -9.87470 -9.58035 -9.08123 -8.90589 -8.56223 -8.45415 -8.26374 -5.90873 -3.94720 3.36074 3.40839 3.42947 3.46512 3.55176 3.87946 4.36463 4.45522 4.52868 4.65725 4.81067 4.89791 4.99414 5.07125 5.10310 5.16982 5.28343 5.32040 5.36671 5.44097 5.44786 5.49660 5.60264 5.66252 5.70810 5.73365 5.81337 5.85306 5.88737 5.92082 5.98265 6.05524 6.14590 6.26216 6.34585 6.37175 6.79103 6.83322 6.97922 7.01510 7.81329 7.94492 8.12648 8.14458 8.45940 8.95187 9.14964 9.68561 11.20166 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.003456 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.233637 B = 8099.575968 C = 8457.556213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.018 3.982 4 C 0.102 3.898 5 C 0.131 3.869 6 N -0.731 5.731 7 C 0.507 3.493 8 O -0.542 6.542 9 C -0.129 4.129 10 C 0.037 3.963 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.143 4.143 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.105 4.105 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 23.410 10.011 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.255 5.255 3 C -0.130 4.130 4 C 0.012 3.988 5 C 0.006 3.994 6 N -0.385 5.385 7 C 0.296 3.704 8 O -0.418 6.418 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.182 4.182 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.143 4.143 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.705 22.499 10.208 24.983 hybrid contribution 0.028 0.308 -0.447 0.543 sum 3.733 22.807 9.762 25.087 Atomic orbital electron populations 1.22490 0.87260 1.02956 1.00417 1.62169 1.08137 1.13587 1.41649 1.22473 1.01080 0.88988 1.00419 1.21327 0.95557 0.93296 0.88635 1.21364 0.99571 0.91216 0.87206 1.46059 1.64793 1.11615 1.16045 1.21521 0.77292 0.80722 0.90899 1.90652 1.42432 1.60537 1.48224 1.21829 1.01911 1.01465 0.91693 1.18890 0.97594 0.86736 0.96828 1.21286 1.40105 0.95497 0.99391 0.92572 1.25024 0.95303 0.97301 0.96799 1.70017 1.42424 1.07252 1.33241 0.86550 0.78048 0.79181 0.84268 1.19748 1.21059 1.21069 1.22136 1.00966 0.99874 0.95260 1.21555 0.95840 1.00977 0.97490 1.21532 0.95556 1.00710 0.97769 1.21613 1.00436 1.00156 0.94022 1.21585 0.92891 1.00590 0.99235 0.95391 0.91376 0.90629 0.91017 0.91491 0.95414 0.90717 0.92453 0.76143 0.90387 0.90442 0.95897 0.95912 0.93086 0.91438 0.91569 0.91226 0.92046 0.91926 0.92284 0.91073 0.91685 0.90800 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.81 60.06 0.53 0.69 16 2 N -0.53 -5.01 4.21 -235.41 -0.99 -6.00 16 3 C 0.02 0.14 8.81 60.06 0.53 0.67 16 4 C 0.10 0.98 0.11 -131.60 -0.01 0.97 16 5 C 0.13 1.70 3.29 -4.04 -0.01 1.69 16 6 N -0.73 -10.81 5.08 -60.29 -0.31 -11.12 16 7 C 0.51 10.10 7.83 -10.98 -0.09 10.01 16 8 O -0.54 -13.13 15.98 5.56 0.09 -13.04 16 9 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 10 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 11 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.14 -1.22 4.04 -26.73 -0.11 -1.33 16 20 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -1.15 5.65 -26.75 -0.15 -1.30 16 23 C -0.11 -0.96 4.29 -26.75 -0.11 -1.07 16 24 H 0.03 0.24 6.46 -51.93 -0.34 -0.09 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.85 6.26 -51.93 -0.33 0.53 16 27 H 0.07 0.51 6.26 -51.93 -0.32 0.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.20 6.36 -51.93 -0.33 -0.13 16 30 H 0.07 1.06 4.83 -51.93 -0.25 0.81 16 31 H 0.06 0.81 6.62 -51.93 -0.34 0.46 16 32 H 0.40 5.25 7.41 -40.82 -0.30 4.94 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 0.53 6.46 -51.93 -0.34 0.20 16 39 H 0.07 0.59 6.48 -51.93 -0.34 0.25 16 40 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.43 8.14 -51.94 -0.42 0.01 16 44 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.74 7.29 -51.93 -0.38 0.36 16 47 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -33.34 349.33 -8.68 -42.02 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.03 Total: 0.90 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.43 Total: -7.85 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.56 Total: -44.25 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.34 -8.68 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359843371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.355 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds