Wall clock time and date at job start Tue Mar 31 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00035 * 2 1 4 4 C 1.46900 * 111.00031 * 123.94910 * 2 1 3 5 5 C 1.53002 * 109.46971 * 58.51520 * 4 2 1 6 6 N 1.46504 * 109.46958 * 54.91814 * 5 4 2 7 7 C 1.34773 * 119.99700 * 175.11006 * 6 5 4 8 8 O 1.21274 * 120.00242 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47051 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.07993 * 119.99707 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99805 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00341 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46814 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47322 * 119.99553 * 15 13 11 18 18 H 1.48500 * 109.47540 * 240.00213 * 15 13 11 19 19 C 1.52998 * 109.47154 * 298.51764 * 4 2 1 20 20 C 1.53006 * 109.47099 * 180.02562 * 19 4 2 21 21 C 1.52999 * 109.47225 * 59.99666 * 20 19 4 22 22 C 1.53003 * 109.46938 * 299.99879 * 21 20 19 23 23 C 1.52999 * 109.47070 * 178.51491 * 4 2 1 24 24 H 1.08995 * 109.47438 * 298.31285 * 1 2 3 25 25 H 1.09000 * 109.47112 * 58.31525 * 1 2 3 26 26 H 1.08997 * 109.46806 * 178.30850 * 1 2 3 27 27 H 1.09002 * 109.47682 * 183.95194 * 3 2 1 28 28 H 1.09001 * 109.47135 * 303.94969 * 3 2 1 29 29 H 1.09006 * 109.47374 * 63.94773 * 3 2 1 30 30 H 1.08999 * 109.47093 * 174.91726 * 5 4 2 31 31 H 1.08997 * 109.46971 * 294.92254 * 5 4 2 32 32 H 0.97001 * 120.00239 * 355.12164 * 6 5 4 33 33 H 1.09001 * 109.47165 * 300.00431 * 9 7 6 34 34 H 1.08993 * 109.47179 * 60.00221 * 9 7 6 35 35 H 1.09001 * 109.46878 * 299.99859 * 10 9 7 36 36 H 1.08993 * 109.47559 * 59.99706 * 10 9 7 37 37 H 0.97001 * 119.99692 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.46981 * 299.99506 * 19 4 2 39 39 H 1.09001 * 109.47479 * 59.99628 * 19 4 2 40 40 H 1.09001 * 109.46673 * 299.99538 * 20 19 4 41 41 H 1.08996 * 109.46910 * 179.97438 * 20 19 4 42 42 H 1.09002 * 109.46945 * 180.02562 * 21 20 19 43 43 H 1.08988 * 109.47137 * 60.00145 * 21 20 19 44 44 H 1.08996 * 109.47780 * 300.00137 * 22 21 20 45 45 H 1.09001 * 109.46573 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.47314 * 299.99893 * 23 4 2 47 47 H 1.09001 * 109.47399 * 60.00289 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.4748 -2.2030 1.0696 6 7 1.8113 -2.7831 -0.2330 7 6 1.5382 -4.0787 -0.4844 8 8 1.0135 -4.7642 0.3673 9 6 1.8849 -4.6756 -1.8241 10 6 1.4726 -6.1487 -1.8482 11 6 1.8187 -6.7454 -3.1881 12 1 2.2856 -6.1349 -3.9467 13 6 1.5392 -8.0708 -3.4453 14 7 0.9710 -8.8145 -2.5213 15 14 1.9675 -8.8103 -5.1064 16 1 2.5935 -7.7719 -5.9639 17 1 2.9179 -9.9355 -4.9171 18 1 0.7311 -9.3110 -5.7591 19 6 1.5353 -0.1182 2.4452 20 6 2.0841 -0.9156 3.6301 21 6 3.6131 -0.9233 3.5752 22 6 4.0732 -1.5711 2.2677 23 6 3.5244 -0.7742 1.0830 24 1 -0.3634 0.4874 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3633 -1.0272 -0.0303 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.9359 -2.7943 1.8607 31 1 0.3926 -2.2039 1.1990 32 1 2.2308 -2.2347 -0.9144 33 1 1.3547 -4.1373 -2.6099 34 1 2.9591 -4.5958 -1.9904 35 1 2.0025 -6.6872 -1.0624 36 1 0.3983 -6.2281 -1.6820 37 1 0.7741 -9.7468 -2.7025 38 1 1.9062 0.9056 2.4937 39 1 0.4460 -0.1122 2.4841 40 1 1.7136 -1.9395 3.5818 41 1 1.7567 -0.4539 4.5616 42 1 4.0041 -1.4918 4.4191 43 1 3.9836 0.1005 3.6235 44 1 3.7027 -2.5950 2.2193 45 1 5.1625 -1.5770 2.2288 46 1 3.8522 -1.2356 0.1516 47 1 3.8953 0.2496 1.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359843371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:14 Heat of formation + Delta-G solvation = -76.331577 kcal Electronic energy + Delta-G solvation = -23478.566554 eV Core-core repulsion = 20273.422454 eV Total energy + Delta-G solvation = -3205.144101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63933 -40.11819 -36.65840 -35.60991 -35.25476 -33.00436 -31.85206 -30.94644 -29.06458 -27.87030 -26.24803 -25.03863 -23.68886 -23.26772 -21.89820 -21.08085 -19.34539 -18.73465 -17.62458 -17.34531 -16.89570 -16.50275 -16.35618 -15.82130 -15.56483 -15.42671 -15.15721 -14.71140 -14.49519 -14.40037 -14.11592 -13.97517 -13.57357 -13.21249 -13.15515 -13.06746 -12.83201 -12.79421 -12.67062 -12.48749 -12.42848 -12.10629 -11.90982 -11.75418 -11.61772 -11.32036 -11.26817 -11.20839 -11.01123 -10.68327 -10.56634 -9.92832 -9.18775 -8.16754 -6.30799 1.42881 1.44551 1.57997 1.78068 2.31770 2.47181 2.96440 3.16164 3.55015 3.68745 3.91118 4.08804 4.14908 4.17312 4.25185 4.34625 4.41603 4.46137 4.53803 4.55735 4.57817 4.64246 4.68183 4.70674 4.76534 4.78965 4.88496 4.99404 5.08778 5.09886 5.12333 5.16727 5.19902 5.22417 5.33680 5.41197 5.48884 5.51874 5.60080 5.65159 5.87142 6.09690 6.14434 6.19654 6.72472 6.87881 7.39092 7.43404 8.96239 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.003456 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.233637 B = 8099.575968 C = 8457.556213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.111 3.889 5 C 0.131 3.869 6 N -0.703 5.703 7 C 0.509 3.491 8 O -0.595 6.595 9 C -0.118 4.118 10 C 0.043 3.957 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.975 3.025 16 H -0.253 1.253 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.102 4.102 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.416 0.584 33 H 0.100 0.900 34 H 0.102 0.898 35 H -0.018 1.018 36 H -0.019 1.019 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 26.142 8.690 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.129 4.129 4 C 0.021 3.979 5 C 0.007 3.993 6 N -0.356 5.356 7 C 0.297 3.703 8 O -0.476 6.476 9 C -0.158 4.158 10 C 0.006 3.994 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.798 3.202 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.163 4.163 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.000 1.000 36 H -0.001 1.001 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.228 25.307 8.873 27.322 hybrid contribution -0.459 -0.504 0.025 0.682 sum 4.768 24.804 8.898 26.779 Atomic orbital electron populations 1.22439 0.87500 1.01614 1.01359 1.62155 1.08032 1.15024 1.41344 1.22530 1.01508 0.87615 1.01206 1.21206 0.95999 0.90968 0.89746 1.21474 0.98903 0.93470 0.85469 1.45762 1.62861 1.09848 1.17126 1.21301 0.77001 0.82020 0.89990 1.90638 1.45168 1.62193 1.49562 1.21603 1.03528 0.97441 0.93203 1.18676 0.94436 0.90843 0.95473 1.21750 1.40026 0.96194 1.00012 0.90657 1.26144 0.94877 0.97956 1.01471 1.70194 1.43756 1.07778 1.36116 0.85259 0.77889 0.78440 0.78564 1.17611 1.20558 1.20607 1.22095 1.00771 1.00514 0.94282 1.21558 0.96324 0.99864 0.98222 1.21512 0.95020 1.01567 0.97057 1.21604 1.00965 0.98759 0.94967 1.21582 0.92065 1.01668 0.98664 0.94478 0.90431 0.93087 0.90205 0.90787 0.94556 0.91967 0.93699 0.74579 0.88147 0.88023 0.99991 1.00077 0.92880 0.89634 0.91986 0.93422 0.90744 0.91827 0.90510 0.93866 0.90759 0.91616 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.81 127.69 1.13 1.46 16 2 N -0.54 -9.05 4.21 -898.69 -3.78 -12.83 16 3 C 0.02 0.22 8.81 127.69 1.13 1.35 16 4 C 0.11 1.98 0.11 3.53 0.00 1.98 16 5 C 0.13 3.46 3.29 86.38 0.28 3.75 16 6 N -0.70 -20.80 5.08 -463.06 -2.35 -23.15 16 7 C 0.51 20.83 7.83 87.66 0.69 21.52 16 8 O -0.59 -30.57 15.98 -3.01 -0.05 -30.62 16 9 C -0.12 -4.99 5.64 29.85 0.17 -4.83 16 10 C 0.04 2.50 4.26 29.85 0.13 2.63 16 11 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 12 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 13 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 14 N -0.94 -60.58 13.29 21.45 0.28 -60.30 16 15 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 16 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 C -0.14 -2.09 4.04 30.60 0.12 -1.96 16 20 C -0.12 -1.93 5.65 30.60 0.17 -1.76 16 21 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 22 C -0.12 -2.16 5.65 30.58 0.17 -1.99 16 23 C -0.10 -1.64 4.29 30.58 0.13 -1.51 16 24 H 0.04 0.58 6.46 -2.39 -0.02 0.56 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.15 6.26 -2.39 -0.01 1.13 16 27 H 0.08 0.83 6.26 -2.39 -0.01 0.81 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.38 6.36 -2.38 -0.02 0.36 16 30 H 0.06 1.85 4.83 -2.39 -0.01 1.84 16 31 H 0.04 1.32 6.62 -2.39 -0.02 1.30 16 32 H 0.42 10.26 7.41 -92.71 -0.69 9.57 16 33 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 35 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 36 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 37 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.09 1.05 6.46 -2.39 -0.02 1.03 16 39 H 0.06 1.01 6.48 -2.39 -0.02 1.00 16 40 H 0.05 0.97 6.55 -2.39 -0.02 0.95 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.04 0.99 6.32 -2.39 -0.02 0.97 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.17 7.29 -2.39 -0.02 1.16 16 47 H 0.09 1.06 6.36 -2.39 -0.02 1.04 16 Total: -1.00 -75.72 349.33 1.39 -74.33 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.26 Total: 17.67 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.99 Total: -12.18 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -5.85 Total: -96.28 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.05 Total: -30.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -75.72 1.39 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359843371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.999 kcal (2) G-P(sol) polarization free energy of solvation -75.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds