Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.46430 * 2 1 4 4 C 1.46904 * 111.00164 * 66.05280 * 3 2 1 5 5 C 1.53002 * 109.46732 * 200.68654 * 4 3 2 6 6 C 1.46903 * 110.99383 * 189.99708 * 3 2 1 7 7 C 1.52998 * 109.47132 * 76.35098 * 6 3 2 8 8 C 1.53003 * 109.47444 * 181.68008 * 7 6 3 9 9 C 1.52998 * 109.47444 * 180.02562 * 8 7 6 10 10 C 1.53112 * 109.52330 * 184.99981 * 9 8 7 11 11 C 1.53037 * 109.27594 * 182.37454 * 10 9 8 12 12 N 1.46850 * 109.52232 * 59.18631 * 11 10 9 13 13 C 1.46898 * 111.00076 * 174.15844 * 12 11 10 14 14 C 1.50702 * 109.47280 * 64.51491 * 13 12 11 15 15 H 1.08003 * 119.99658 * 354.91076 * 14 13 12 16 16 C 1.37876 * 120.00135 * 175.17949 * 14 13 12 17 17 N 1.31509 * 119.99938 * 359.72760 * 16 14 13 18 18 Si 1.86797 * 120.00076 * 179.72898 * 16 14 13 19 19 H 1.48505 * 109.47408 * 90.00162 * 18 16 14 20 20 H 1.48501 * 109.47165 * 209.99951 * 18 16 14 21 21 H 1.48504 * 109.47006 * 329.99991 * 18 16 14 22 22 C 1.46849 * 111.19490 * 298.25521 * 12 11 10 23 23 C 1.53032 * 109.52406 * 61.74158 * 22 12 11 24 24 H 1.08996 * 109.47606 * 299.99813 * 1 2 3 25 25 H 1.08995 * 109.47111 * 60.00103 * 1 2 3 26 26 H 1.09004 * 109.46981 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47157 * 239.99900 * 2 1 3 28 28 H 1.09002 * 109.46907 * 119.99599 * 2 1 3 29 29 H 1.09003 * 109.46559 * 320.68035 * 4 3 2 30 30 H 1.08993 * 109.47525 * 80.68320 * 4 3 2 31 31 H 1.08993 * 109.47031 * 304.21186 * 5 4 3 32 32 H 1.09003 * 109.47039 * 64.21529 * 5 4 3 33 33 H 1.09000 * 109.47044 * 184.20652 * 5 4 3 34 34 H 1.09000 * 109.47438 * 316.35084 * 6 3 2 35 35 H 1.09008 * 109.46904 * 196.35031 * 6 3 2 36 36 H 1.09002 * 109.47142 * 61.68199 * 7 6 3 37 37 H 1.08999 * 109.47276 * 301.68708 * 7 6 3 38 38 H 1.09002 * 109.46795 * 59.99979 * 8 7 6 39 39 H 1.09003 * 109.47046 * 300.00333 * 8 7 6 40 40 H 1.09002 * 109.52204 * 305.13367 * 9 8 7 41 41 H 1.09000 * 109.50137 * 62.43696 * 10 9 8 42 42 H 1.09000 * 109.50598 * 302.31921 * 10 9 8 43 43 H 1.08996 * 109.46534 * 299.16281 * 11 10 9 44 44 H 1.09005 * 109.45300 * 179.19378 * 11 10 9 45 45 H 1.09004 * 109.47376 * 304.51769 * 13 12 11 46 46 H 1.08996 * 109.47220 * 184.51664 * 13 12 11 47 47 H 0.97003 * 120.00168 * 179.97438 * 17 16 14 48 48 H 1.08996 * 109.46452 * 181.76173 * 22 12 11 49 49 H 1.09007 * 109.45757 * 301.72712 * 22 12 11 50 50 H 1.09004 * 109.50395 * 180.87955 * 23 22 12 51 51 H 1.08996 * 109.50320 * 60.76077 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2534 5 6 1.7147 3.5813 1.0396 6 6 3.4684 1.4312 -0.2381 7 6 3.7493 1.1886 -1.7224 8 6 5.2603 1.1950 -1.9633 9 6 5.5412 0.9531 -3.4477 10 6 7.0514 0.8351 -3.6700 11 6 7.3294 0.6525 -5.1638 12 7 6.7957 1.8016 -5.9063 13 6 7.1651 1.7285 -7.3262 14 6 6.5148 0.5221 -7.9530 15 1 5.9574 -0.1706 -7.3399 16 6 6.6361 0.2998 -9.3083 17 7 7.3147 1.1433 -10.0549 18 14 5.8364 -1.1996 -10.0841 19 1 4.4572 -0.8576 -10.5155 20 1 6.6310 -1.6305 -11.2623 21 1 5.7853 -2.3027 -9.0912 22 6 5.3398 1.9074 -5.7461 23 6 5.0024 2.1273 -4.2697 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.6662 1.7726 1.5594 30 1 2.3829 1.7884 2.0295 31 1 2.6965 3.8661 0.6618 32 1 0.9501 3.8690 0.3179 33 1 1.5289 4.0876 1.9868 34 1 3.9590 0.6596 0.3553 35 1 3.8529 2.4099 0.0493 36 1 3.2838 1.9771 -2.3138 37 1 3.3385 0.2229 -2.0169 38 1 5.7258 0.4066 -1.3718 39 1 5.6710 2.1608 -1.6688 40 1 5.0529 0.0318 -3.7653 41 1 7.4339 -0.0254 -3.1209 42 1 7.5433 1.7412 -3.3164 43 1 6.8488 -0.2610 -5.5137 44 1 8.4049 0.5825 -5.3271 45 1 8.2482 1.6452 -7.4161 46 1 6.8265 2.6301 -7.8366 47 1 7.4004 0.9867 -11.0084 48 1 4.9701 2.7486 -6.3323 49 1 4.8685 0.9879 -6.0933 50 1 3.9209 2.1902 -4.1490 51 1 5.4621 3.0537 -3.9254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359850818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = -26.478058 kcal Electronic energy + Delta-G solvation = -22910.856736 eV Core-core repulsion = 19843.707541 eV Total energy + Delta-G solvation = -3067.149195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.87376 -38.19477 -35.15609 -32.81564 -32.05277 -31.54571 -30.13197 -29.08885 -26.87476 -25.18417 -23.33169 -23.07409 -22.49585 -21.47212 -20.46717 -20.27080 -19.03694 -16.37408 -16.13766 -15.78150 -15.16635 -14.98913 -14.70347 -14.19743 -14.18842 -14.07443 -13.65782 -13.34216 -13.19152 -12.70368 -12.58094 -12.49526 -12.08971 -12.00027 -11.77618 -11.75336 -11.65870 -11.47044 -11.36749 -11.05986 -11.01754 -10.85906 -10.76277 -10.52320 -10.42435 -10.28407 -10.19283 -10.00193 -9.69896 -9.55990 -9.32063 -8.53503 -8.40215 -7.07933 -5.99122 -4.08472 3.28605 3.35350 3.38231 3.62838 4.42717 4.65900 4.70750 4.88549 4.91237 5.00366 5.08853 5.16685 5.20044 5.21355 5.28575 5.29950 5.31336 5.43370 5.46097 5.54751 5.59505 5.71512 5.74160 5.75228 5.81276 5.92206 5.93595 5.98110 6.00243 6.03440 6.18256 6.20250 6.26359 6.33451 6.47993 6.56624 6.62001 6.64465 6.80937 6.86212 6.89824 6.92001 7.02377 7.37149 7.56759 7.93800 8.15115 8.35272 8.41277 9.02848 9.58175 11.05470 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002987 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.037543 B = 9371.970299 C = 9960.062777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 N -0.539 5.539 4 C 0.045 3.955 5 C -0.147 4.147 6 C 0.054 3.946 7 C -0.113 4.113 8 C -0.110 4.110 9 C -0.085 4.085 10 C -0.110 4.110 11 C 0.063 3.937 12 N -0.542 5.542 13 C 0.186 3.814 14 C -0.547 4.547 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.065 3.935 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.057 0.943 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 0.347 22.558 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 N -0.264 5.264 4 C -0.082 4.082 5 C -0.204 4.204 6 C -0.074 4.074 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.103 4.103 10 C -0.148 4.148 11 C -0.065 4.065 12 N -0.266 5.266 13 C 0.061 3.939 14 C -0.586 4.586 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.064 4.064 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.958 1.060 22.188 24.343 hybrid contribution -0.357 -2.094 -0.324 2.149 sum -10.315 -1.033 21.863 24.197 Atomic orbital electron populations 1.21830 0.95013 1.01452 1.02417 1.22116 0.95965 0.89069 1.00811 1.62045 1.14359 1.15591 1.34432 1.22146 1.00668 0.95207 0.90224 1.21769 1.02607 0.94683 1.01367 1.22209 0.86890 1.00962 0.97295 1.21610 0.96173 1.02445 0.94893 1.21590 0.95230 1.01429 0.96585 1.21158 0.96428 0.98903 0.93840 1.21661 0.95200 1.00893 0.97032 1.21840 0.99445 0.93421 0.91842 1.62435 1.10454 1.39758 1.13953 1.19738 0.96209 0.96392 0.81609 1.21776 1.33682 1.09817 0.93365 0.92569 1.24967 0.95157 0.96388 0.97340 1.69944 1.40873 1.36267 1.05974 0.86662 0.79442 0.83359 0.78962 1.20623 1.21147 1.20004 1.21829 0.89957 1.00514 0.94086 1.21705 0.99322 0.97883 0.95857 0.92821 0.91704 0.92407 0.90406 0.95285 0.90768 0.95077 0.92513 0.91962 0.92667 0.95016 0.90891 0.90798 0.92276 0.92684 0.92113 0.91910 0.92870 0.91919 0.94783 0.92033 0.95596 0.94847 0.92855 0.91967 0.94613 0.92436 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C 0.05 0.42 5.50 -3.82 -0.02 0.40 16 3 N -0.54 -5.14 4.36 -234.62 -1.02 -6.16 16 4 C 0.05 0.37 5.54 -3.82 -0.02 0.35 16 5 C -0.15 -1.13 10.07 37.16 0.37 -0.75 16 6 C 0.05 0.52 4.80 -3.82 -0.02 0.50 16 7 C -0.11 -1.22 5.12 -26.73 -0.14 -1.36 16 8 C -0.11 -1.27 4.69 -26.73 -0.13 -1.39 16 9 C -0.08 -1.22 2.25 -90.50 -0.20 -1.42 16 10 C -0.11 -1.72 5.38 -26.65 -0.14 -1.86 16 11 C 0.06 1.26 5.11 -3.83 -0.02 1.24 16 12 N -0.54 -11.96 4.86 -236.11 -1.15 -13.11 16 13 C 0.19 4.92 5.12 -4.98 -0.03 4.90 16 14 C -0.55 -15.32 7.72 -34.44 -0.27 -15.58 16 15 H 0.06 1.56 5.86 -52.48 -0.31 1.26 16 16 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.06 1.30 5.04 -3.84 -0.02 1.28 16 23 C -0.11 -1.73 5.08 -26.65 -0.14 -1.87 16 24 H 0.05 0.38 6.24 -51.93 -0.32 0.05 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.72 6.64 -51.93 -0.35 0.38 16 28 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 29 H 0.07 0.55 5.87 -51.93 -0.30 0.25 16 30 H 0.03 0.25 7.98 -51.93 -0.41 -0.17 16 31 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.30 7.99 -51.93 -0.41 -0.11 16 35 H 0.07 0.69 6.51 -51.92 -0.34 0.35 16 36 H 0.07 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.06 0.66 6.78 -51.93 -0.35 0.31 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.74 6.84 -51.93 -0.36 0.38 16 44 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 45 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.06 1.29 8.12 -51.93 -0.42 0.86 16 49 H 0.04 0.78 6.75 -51.92 -0.35 0.43 16 50 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 51 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -29.09 377.96 -11.27 -40.36 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -10.02 Total: -2.96 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.49 Total: -14.62 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -1.43 Total: -45.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.09 -11.27 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359850818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.882 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds