Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46492 * 120.00050 * 2 1 4 4 C 1.53004 * 109.46890 * 90.00065 * 3 2 1 5 5 C 1.53007 * 109.47100 * 174.49139 * 4 3 2 6 6 H 1.08994 * 109.46158 * 303.22678 * 5 4 3 7 7 C 1.53035 * 109.45689 * 63.20899 * 5 4 3 8 8 C 1.53123 * 109.27441 * 179.19490 * 7 5 4 9 9 C 1.53120 * 109.16201 * 302.34281 * 8 7 5 10 10 C 1.53039 * 109.27787 * 57.65424 * 9 8 7 11 11 N 1.46844 * 109.46060 * 183.24887 * 5 4 3 12 12 C 1.46901 * 111.00188 * 54.14718 * 11 5 4 13 13 C 1.34772 * 119.99410 * 180.02562 * 2 1 3 14 14 O 1.21290 * 119.99457 * 180.02562 * 13 2 1 15 15 C 1.50700 * 120.00705 * 359.97438 * 13 2 1 16 16 C 1.52992 * 109.47508 * 180.02562 * 15 13 2 17 17 C 1.50700 * 109.47508 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99736 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00206 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00305 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47198 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46796 * 120.00251 * 21 19 17 24 24 H 1.48494 * 109.47549 * 240.00111 * 21 19 17 25 25 H 1.08998 * 109.47088 * 89.99356 * 1 2 3 26 26 H 1.09001 * 109.46991 * 209.99726 * 1 2 3 27 27 H 1.09002 * 109.46607 * 329.99689 * 1 2 3 28 28 H 1.09001 * 109.47481 * 210.00296 * 3 2 1 29 29 H 1.09001 * 109.47653 * 330.01004 * 3 2 1 30 30 H 1.08996 * 109.47419 * 294.49751 * 4 3 2 31 31 H 1.08998 * 109.46929 * 54.49703 * 4 3 2 32 32 H 1.09001 * 109.50613 * 299.12967 * 7 5 4 33 33 H 1.08996 * 109.50980 * 59.21500 * 7 5 4 34 34 H 1.09004 * 109.52476 * 62.24747 * 8 7 5 35 35 H 1.09001 * 109.52390 * 182.37758 * 8 7 5 36 36 H 1.08998 * 109.50240 * 177.59551 * 9 8 7 37 37 H 1.09003 * 109.50117 * 297.67683 * 9 8 7 38 38 H 1.09000 * 109.46199 * 60.83467 * 10 9 8 39 39 H 1.08994 * 109.46266 * 180.80613 * 10 9 8 40 40 H 1.08998 * 109.46809 * 53.96805 * 12 11 5 41 41 H 1.09002 * 109.47281 * 173.96500 * 12 11 5 42 42 H 1.09003 * 109.46909 * 293.96534 * 12 11 5 43 43 H 1.08999 * 109.47048 * 300.00590 * 15 13 2 44 44 H 1.09003 * 109.46813 * 60.00295 * 15 13 2 45 45 H 1.08999 * 109.47301 * 300.00256 * 16 15 13 46 46 H 1.09003 * 109.46989 * 60.00223 * 16 15 13 47 47 H 0.96999 * 120.00744 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 6 3.3344 2.9607 1.4448 6 1 4.2610 2.7525 0.9100 7 6 2.5937 4.1081 0.7543 8 6 3.4716 5.3624 0.7767 9 6 3.8190 5.7069 2.2277 10 6 4.5241 4.5131 2.8755 11 7 3.6431 3.3391 2.8297 12 6 4.2306 2.2113 3.5651 13 6 2.1388 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0001 15 6 1.3854 -2.4723 -0.0005 16 6 2.3795 -3.6352 -0.0005 17 6 1.6260 -4.9404 -0.0012 18 1 0.5460 -4.9403 -0.0019 19 6 2.3154 -6.1344 -0.0018 20 7 3.6305 -6.1345 -0.0014 21 14 1.3813 -7.7521 -0.0019 22 1 -0.0787 -7.4807 -0.0018 23 1 1.7396 -8.5304 -1.2148 24 1 1.7405 -8.5312 1.2102 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 3.1500 1.1384 -0.5139 29 1 1.6085 2.0284 -0.5137 30 1 1.5024 1.9348 1.9272 31 1 2.9563 0.9095 1.9840 32 1 2.3783 3.8331 -0.2782 33 1 1.6600 4.3073 1.2802 34 1 4.3883 5.1756 0.2173 35 1 2.9312 6.1935 0.3235 36 1 4.4789 6.5742 2.2478 37 1 2.9049 5.9324 2.7770 38 1 5.4451 4.2976 2.3339 39 1 4.7600 4.7499 3.9130 40 1 5.0920 1.8294 3.0171 41 1 4.5479 2.5471 4.5524 42 1 3.4879 1.4206 3.6716 43 1 0.7590 -2.5302 0.8896 44 1 0.7584 -2.5299 -0.8903 45 1 3.0062 -3.5775 -0.8905 46 1 3.0061 -3.5775 0.8895 47 1 4.1155 -6.9745 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360312269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -53.898882 kcal Electronic energy + Delta-G solvation = -22751.526404 eV Core-core repulsion = 19547.355058 eV Total energy + Delta-G solvation = -3204.171346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82574 -39.05555 -35.56027 -33.81749 -33.53288 -32.98995 -30.95354 -28.90940 -26.86598 -26.39799 -25.72042 -24.03719 -22.90406 -21.47288 -20.76072 -19.84204 -18.48567 -16.92783 -16.30875 -15.77611 -15.63048 -15.40015 -15.00534 -14.74839 -14.39167 -14.37289 -14.28326 -13.41478 -13.27340 -13.00591 -12.87364 -12.46355 -12.36469 -12.22768 -12.14000 -11.98426 -11.83063 -11.77898 -11.39984 -11.08457 -10.96198 -10.93457 -10.85835 -10.56772 -10.54093 -10.26090 -9.93301 -9.60433 -9.13791 -8.95193 -8.47057 -8.38554 -8.30042 -5.94916 -3.99151 3.23644 3.33082 3.33455 3.40521 3.43864 3.75761 4.48016 4.53279 4.60511 4.66680 4.84527 5.01960 5.09160 5.13995 5.25145 5.27735 5.33159 5.38103 5.40061 5.42231 5.46373 5.52549 5.59251 5.63499 5.65689 5.72329 5.75201 5.80127 5.84535 5.87461 5.95665 6.08691 6.16273 6.23697 6.26281 6.28955 6.79615 6.91883 6.92371 6.98712 7.75956 7.77836 7.88317 8.08809 8.40352 8.78371 9.09692 9.64351 11.16112 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.002972 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.014028 B = 9419.114633 C = 9887.164961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.630 5.630 3 C 0.118 3.882 4 C -0.130 4.130 5 C 0.089 3.911 6 H 0.043 0.957 7 C -0.113 4.113 8 C -0.123 4.123 9 C -0.116 4.116 10 C 0.054 3.946 11 N -0.538 5.538 12 C 0.021 3.979 13 C 0.510 3.490 14 O -0.534 6.534 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 24.137 3.427 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C -0.006 4.006 4 C -0.168 4.168 5 C -0.020 4.020 6 H 0.061 0.939 7 C -0.151 4.151 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.074 4.074 11 N -0.263 5.263 12 C -0.127 4.127 13 C 0.300 3.700 14 O -0.409 6.409 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.585 24.126 3.651 24.662 hybrid contribution 0.263 -1.118 -0.339 1.197 sum -3.322 23.008 3.312 23.481 Atomic orbital electron populations 1.21730 0.79863 1.03008 1.01519 1.48063 1.06780 1.05940 1.75789 1.21357 0.97881 0.85141 0.96231 1.22059 1.00291 0.96646 0.97854 1.21597 0.97605 0.94539 0.88278 0.93940 1.21692 0.99102 0.94109 1.00190 1.21596 0.99878 0.97913 0.96652 1.21580 1.00984 0.96833 0.96011 1.22095 0.93795 0.90882 1.00585 1.61946 1.44787 1.05643 1.13912 1.22421 0.98630 0.93798 0.97848 1.21595 0.88450 0.85602 0.74360 1.90656 1.14429 1.87315 1.48491 1.21878 1.00671 0.92006 1.02227 1.18904 0.93199 0.89447 0.98535 1.21261 0.92948 0.91014 1.51150 0.92575 1.25028 0.94820 0.99229 0.95349 1.70006 1.06059 1.26439 1.50362 0.86543 0.80017 0.83870 0.77576 1.19743 1.21029 1.21022 0.92958 0.90549 0.91703 0.90305 0.91029 0.91213 0.90932 0.91304 0.91039 0.92298 0.91814 0.91761 0.91143 0.95056 0.90887 0.95333 0.91669 0.90723 0.90313 0.90343 0.95898 0.95905 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.24 59.85 0.61 1.52 16 2 N -0.63 -9.40 2.87 -181.56 -0.52 -9.92 16 3 C 0.12 1.51 4.98 -4.04 -0.02 1.49 16 4 C -0.13 -1.58 4.71 -26.73 -0.13 -1.71 16 5 C 0.09 0.97 1.92 -67.72 -0.13 0.84 16 6 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 7 C -0.11 -1.00 5.07 -26.65 -0.14 -1.14 16 8 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 9 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 10 C 0.05 0.50 5.46 -3.83 -0.02 0.48 16 11 N -0.54 -5.84 4.75 -234.92 -1.11 -6.95 16 12 C 0.02 0.23 8.89 60.07 0.53 0.77 16 13 C 0.51 10.15 7.67 -10.99 -0.08 10.07 16 14 O -0.53 -12.81 15.56 5.55 0.09 -12.73 16 15 C -0.13 -2.66 4.19 -27.89 -0.12 -2.78 16 16 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 17 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 21 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 27 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 29 H 0.07 0.72 6.75 -51.93 -0.35 0.37 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.08 6.27 -51.93 -0.33 0.76 16 32 H 0.07 0.56 6.68 -51.93 -0.35 0.22 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 40 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 42 H 0.07 0.89 6.52 -51.93 -0.34 0.55 16 43 H 0.08 1.50 7.40 -51.93 -0.38 1.12 16 44 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 45 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -33.76 364.69 -9.42 -43.18 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.75 Total: -3.37 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.34 Total: -5.56 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.90 Total: -43.80 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.76 -9.42 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.718 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds