Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00023 * 2 1 4 4 C 1.53005 * 109.47138 * 270.00068 * 3 2 1 5 5 C 1.52991 * 109.46900 * 176.51130 * 4 3 2 6 6 H 1.08996 * 109.46944 * 54.61950 * 5 4 3 7 7 C 1.53040 * 109.46505 * 294.64731 * 5 4 3 8 8 C 1.53116 * 109.28241 * 180.80849 * 7 5 4 9 9 C 1.53113 * 109.16137 * 57.65437 * 8 7 5 10 10 C 1.53043 * 109.27980 * 302.35068 * 9 8 7 11 11 N 1.46847 * 109.52512 * 59.17571 * 10 9 8 12 12 C 1.46901 * 110.99866 * 174.16594 * 11 10 9 13 13 C 1.34777 * 119.99752 * 180.02562 * 2 1 3 14 14 O 1.21283 * 119.99945 * 180.02562 * 13 2 1 15 15 C 1.50697 * 119.99947 * 359.97438 * 13 2 1 16 16 C 1.53003 * 109.46748 * 179.97438 * 15 13 2 17 17 C 1.50706 * 109.46920 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99893 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99917 * 179.72311 * 17 16 15 20 20 N 1.31516 * 119.99996 * 180.27291 * 19 17 16 21 21 Si 1.86793 * 120.00008 * 0.28225 * 19 17 16 22 22 H 1.48506 * 109.47519 * 89.99586 * 21 19 17 23 23 H 1.48499 * 109.47252 * 209.99775 * 21 19 17 24 24 H 1.48501 * 109.47166 * 329.99412 * 21 19 17 25 25 H 1.09002 * 109.47139 * 270.00247 * 1 2 3 26 26 H 1.09002 * 109.47294 * 29.99819 * 1 2 3 27 27 H 1.09000 * 109.47385 * 149.99803 * 1 2 3 28 28 H 1.09003 * 109.47160 * 30.00155 * 3 2 1 29 29 H 1.08994 * 109.46968 * 150.00122 * 3 2 1 30 30 H 1.08997 * 109.46687 * 296.50983 * 4 3 2 31 31 H 1.09001 * 109.46896 * 56.51041 * 4 3 2 32 32 H 1.09004 * 109.49996 * 300.75288 * 7 5 4 33 33 H 1.09000 * 109.49809 * 60.86524 * 7 5 4 34 34 H 1.09000 * 109.52029 * 297.75340 * 8 7 5 35 35 H 1.09000 * 109.52468 * 177.56287 * 8 7 5 36 36 H 1.08996 * 109.50523 * 182.40527 * 9 8 7 37 37 H 1.09006 * 109.50294 * 62.28455 * 9 8 7 38 38 H 1.09006 * 109.45958 * 299.16051 * 10 9 8 39 39 H 1.08995 * 109.45150 * 179.19220 * 10 9 8 40 40 H 1.09000 * 109.46875 * 191.11222 * 12 11 10 41 41 H 1.09008 * 109.46595 * 311.10533 * 12 11 10 42 42 H 1.08997 * 109.47508 * 71.10283 * 12 11 10 43 43 H 1.09001 * 109.47049 * 60.00420 * 15 13 2 44 44 H 1.08999 * 109.47137 * 300.00036 * 15 13 2 45 45 H 1.09001 * 109.46965 * 60.00414 * 16 15 13 46 46 H 1.08999 * 109.47367 * 299.99940 * 16 15 13 47 47 H 0.96993 * 119.99902 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.1402 3.0771 -1.4434 6 1 4.0412 3.0308 -0.8317 7 6 2.1874 4.1278 -0.8686 8 6 2.8723 5.4971 -0.8901 9 6 3.2814 5.8319 -2.3270 10 6 4.2024 4.7318 -2.8596 11 7 3.5012 3.4423 -2.8192 12 6 4.3039 2.3865 -3.4507 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3853 -2.4723 -0.0005 16 6 2.3796 -3.6352 -0.0018 17 6 1.6260 -4.9403 -0.0012 18 1 0.5460 -4.9403 -0.0004 19 6 2.3154 -6.1344 -0.0079 20 7 1.6578 -7.2733 -0.0128 21 14 4.1833 -6.1344 -0.0098 22 1 4.6799 -6.1414 1.3897 23 1 4.6776 -7.3434 -0.7164 24 1 4.6776 -4.9185 -0.7044 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0933 0.9810 -1.9379 31 1 1.5035 1.7808 -1.9741 32 1 1.2803 4.1651 -1.4718 33 1 1.9321 3.8646 0.1579 34 1 3.7584 5.4711 -0.2558 35 1 2.1817 6.2556 -0.5217 36 1 3.8075 6.7863 -2.3426 37 1 2.3914 5.8960 -2.9532 38 1 5.0985 4.6775 -2.2413 39 1 4.4839 4.9602 -3.8876 40 1 3.6908 1.4954 -3.5853 41 1 4.6602 2.7324 -4.4211 42 1 5.1563 2.1484 -2.8145 43 1 0.7584 -2.5298 -0.8903 44 1 0.7590 -2.5302 0.8897 45 1 3.0069 -3.5779 0.8878 46 1 3.0056 -3.5771 -0.8922 47 1 2.1427 -8.1133 -0.0179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360312270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = -50.704286 kcal Electronic energy + Delta-G solvation = -22804.460182 eV Core-core repulsion = 19600.427364 eV Total energy + Delta-G solvation = -3204.032818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.91645 -39.16633 -35.67775 -33.88855 -33.58474 -33.02526 -31.24415 -29.06084 -26.95030 -26.59056 -25.96035 -24.06084 -22.93696 -21.34794 -20.64268 -19.91316 -18.61949 -17.17346 -16.44006 -16.06260 -15.75075 -15.45242 -15.03686 -14.86560 -14.46214 -14.38553 -14.05429 -13.46122 -13.42832 -13.08378 -12.95949 -12.55659 -12.53782 -12.39925 -12.35481 -12.08370 -11.94371 -11.87702 -11.44252 -11.32738 -11.00964 -10.96864 -10.92847 -10.62629 -10.30771 -10.09987 -10.01743 -9.76684 -9.20394 -9.11879 -8.53858 -8.50548 -8.45850 -6.01906 -4.00381 3.10513 3.23709 3.38652 3.45115 3.56318 3.68465 4.46415 4.52061 4.54480 4.60830 4.77931 4.93419 5.02985 5.07061 5.18349 5.20869 5.25579 5.31060 5.33662 5.35289 5.37220 5.44684 5.52169 5.56988 5.58963 5.66526 5.67980 5.75931 5.77071 5.82439 5.89208 6.02058 6.07310 6.11425 6.13683 6.20791 6.67048 6.74597 6.85423 6.91351 7.38377 7.45482 7.64480 7.81038 8.50988 8.65232 9.01255 9.61378 11.10988 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.003218 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.995964 B = 8699.178752 C = 9303.029798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.628 5.628 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.089 3.911 6 H 0.042 0.958 7 C -0.114 4.114 8 C -0.123 4.123 9 C -0.117 4.117 10 C 0.055 3.945 11 N -0.538 5.538 12 C 0.021 3.979 13 C 0.510 3.490 14 O -0.540 6.540 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.018 0.982 46 H 0.023 0.977 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 27.413 -3.449 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.363 5.363 3 C -0.007 4.007 4 C -0.170 4.170 5 C -0.020 4.020 6 H 0.059 0.941 7 C -0.151 4.151 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.073 4.073 11 N -0.263 5.263 12 C -0.127 4.127 13 C 0.300 3.700 14 O -0.416 6.416 15 C -0.160 4.160 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.036 0.964 46 H 0.041 0.959 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.169 27.253 -3.715 27.506 hybrid contribution 1.607 -0.200 0.431 1.676 sum 1.776 27.053 -3.284 27.310 Atomic orbital electron populations 1.21766 0.79604 1.03199 1.01710 1.48016 1.06913 1.05889 1.75443 1.21385 0.97881 0.85131 0.96295 1.22070 1.01621 0.95511 0.97781 1.21583 0.97355 0.94580 0.88470 0.94051 1.21703 0.98803 0.93877 1.00747 1.21593 1.00411 0.97258 0.96761 1.21586 1.00062 0.97265 0.96544 1.22099 0.94964 0.89524 1.00739 1.61931 1.43663 1.02605 1.18089 1.22424 0.96244 0.95364 0.98652 1.21566 0.88368 0.85729 0.74290 1.90636 1.14493 1.87446 1.49032 1.21688 1.00205 0.91046 1.03086 1.19376 0.94463 0.92229 0.97575 1.21120 0.94961 0.88874 1.51228 0.90943 1.24970 0.98462 0.95458 0.94359 1.69911 1.35815 0.97414 1.51155 0.86799 0.86266 0.77785 0.78724 1.20256 1.21450 1.18551 0.92778 0.91564 0.90388 0.90875 0.90326 0.90922 0.91044 0.90969 0.91281 0.92328 0.91761 0.91722 0.91090 0.95104 0.90856 0.90683 0.91635 0.95432 0.89655 0.89706 0.96351 0.95906 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.24 59.85 0.61 1.46 16 2 N -0.63 -8.86 2.87 -181.56 -0.52 -9.38 16 3 C 0.12 1.42 5.25 -4.04 -0.02 1.40 16 4 C -0.13 -1.52 4.76 -26.73 -0.13 -1.64 16 5 C 0.09 0.90 1.89 -67.72 -0.13 0.78 16 6 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 7 C -0.11 -0.94 5.12 -26.65 -0.14 -1.07 16 8 C -0.12 -0.90 6.00 -26.61 -0.16 -1.06 16 9 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 10 C 0.05 0.47 5.46 -3.83 -0.02 0.45 16 11 N -0.54 -5.51 4.75 -234.92 -1.12 -6.62 16 12 C 0.02 0.22 8.88 60.07 0.53 0.75 16 13 C 0.51 9.59 7.67 -10.99 -0.08 9.51 16 14 O -0.54 -12.15 15.56 5.56 0.09 -12.07 16 15 C -0.12 -2.39 4.19 -27.88 -0.12 -2.51 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 17 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 18 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 21 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.26 -6.77 6.54 56.52 0.37 -6.41 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 28 H 0.07 0.69 6.37 -51.93 -0.33 0.36 16 29 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 30 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.52 6.55 -51.93 -0.34 0.18 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 40 H 0.07 0.85 6.52 -51.93 -0.34 0.51 16 41 H 0.06 0.59 7.97 -51.92 -0.41 0.17 16 42 H 0.03 0.30 8.11 -51.93 -0.42 -0.12 16 43 H 0.09 1.57 7.40 -51.93 -0.38 1.18 16 44 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 45 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 46 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.72 360.76 -9.02 -42.75 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -8.68 Total: -4.32 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.33 Total: -6.52 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.86 Total: -43.42 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.72 -9.02 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.958 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds