Wall clock time and date at job start Tue Mar 31 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99809 * 2 1 4 4 C 1.46893 * 110.99984 * 123.95692 * 2 1 3 5 5 C 1.52994 * 109.47450 * 66.04444 * 4 2 1 6 6 N 1.46504 * 109.47439 * 178.74075 * 5 4 2 7 7 C 1.34775 * 120.00072 * 275.49174 * 6 5 4 8 8 O 1.21276 * 120.00004 * 355.23554 * 7 6 5 9 9 C 1.50702 * 120.00075 * 175.23832 * 7 6 5 10 10 C 1.52996 * 109.47095 * 185.15301 * 9 7 6 11 11 C 1.50702 * 109.47095 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99708 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00137 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00166 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99797 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46879 * 90.00597 * 15 13 11 17 17 H 1.48506 * 109.47162 * 210.00058 * 15 13 11 18 18 H 1.48492 * 109.47474 * 330.00581 * 15 13 11 19 19 C 1.46500 * 119.99913 * 95.48851 * 6 5 4 20 20 C 1.54265 * 110.03260 * 52.54039 * 19 6 5 21 21 C 1.54967 * 104.16138 * 217.13850 * 20 19 6 22 22 C 1.54889 * 102.77861 * 37.88311 * 21 20 19 23 23 C 1.53877 * 110.03169 * 295.32352 * 19 6 5 24 24 H 1.08995 * 109.47067 * 296.04719 * 1 2 3 25 25 H 1.09002 * 109.46798 * 56.04910 * 1 2 3 26 26 H 1.09002 * 109.46920 * 176.04020 * 1 2 3 27 27 H 1.09004 * 109.46698 * 183.95165 * 3 2 1 28 28 H 1.08996 * 109.47106 * 303.95054 * 3 2 1 29 29 H 1.08998 * 109.47014 * 63.95592 * 3 2 1 30 30 H 1.09007 * 109.46988 * 306.04627 * 4 2 1 31 31 H 1.09000 * 109.47622 * 186.04945 * 4 2 1 32 32 H 1.09004 * 109.47173 * 58.74080 * 5 4 2 33 33 H 1.09005 * 109.47569 * 298.74141 * 5 4 2 34 34 H 1.08995 * 109.47076 * 305.15667 * 9 7 6 35 35 H 1.08999 * 109.46682 * 65.15479 * 9 7 6 36 36 H 1.08995 * 109.47457 * 300.00133 * 10 9 7 37 37 H 1.09006 * 109.47059 * 60.00129 * 10 9 7 38 38 H 0.96993 * 120.00001 * 179.97438 * 14 13 11 39 39 H 1.08997 * 110.02000 * 173.93069 * 19 6 5 40 40 H 1.09001 * 110.48969 * 335.77880 * 20 19 6 41 41 H 1.08994 * 110.49214 * 98.42849 * 20 19 6 42 42 H 1.09007 * 110.71770 * 279.57257 * 21 20 19 43 43 H 1.08998 * 110.92775 * 156.29212 * 21 20 19 44 44 H 1.08993 * 110.48905 * 203.40541 * 22 21 20 45 45 H 1.09007 * 110.59587 * 80.81780 * 22 21 20 46 46 H 1.09006 * 110.02870 * 238.56738 * 23 19 6 47 47 H 1.08999 * 110.03422 * 359.97438 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 7 2.1822 -3.0112 2.0893 7 6 3.4577 -3.4444 2.0463 8 8 4.1227 -3.2735 1.0466 9 6 4.0576 -4.1411 3.2404 10 6 5.5407 -4.4125 2.9805 11 6 6.1407 -5.1087 4.1749 12 1 5.5258 -5.3346 5.0335 13 6 7.4749 -5.4564 4.1718 14 7 7.9986 -6.0635 5.2143 15 14 8.5386 -5.0651 2.6870 16 1 9.1454 -3.7199 2.8535 17 1 9.6144 -6.0818 2.5669 18 1 7.7020 -5.0823 1.4603 19 6 1.3465 -3.3088 3.2552 20 6 0.0236 -3.9618 2.8043 21 6 -1.0369 -3.3764 3.7708 22 6 -0.5698 -1.9099 3.9445 23 6 0.9696 -2.0049 3.9802 24 1 -0.3633 0.4512 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0710 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0470 -2.6155 0.0340 33 1 0.5468 -2.3500 0.9547 34 1 3.9530 -3.5076 4.1211 35 1 3.5394 -5.0853 3.4082 36 1 5.6453 -5.0460 2.0998 37 1 6.0589 -3.4683 2.8126 38 1 8.9371 -6.3084 5.2119 39 1 1.8783 -3.9739 3.9355 40 1 -0.2060 -3.6870 1.7747 41 1 0.0783 -5.0454 2.9078 42 1 -1.0209 -3.9026 4.7253 43 1 -2.0316 -3.4149 3.3268 44 1 -0.9483 -1.4971 4.8795 45 1 -0.8949 -1.3014 3.1005 46 1 1.3178 -2.0376 5.0126 47 1 1.4088 -1.1507 3.4648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360363187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:03 Heat of formation + Delta-G solvation = -40.497592 kcal Electronic energy + Delta-G solvation = -23508.223289 eV Core-core repulsion = 20304.633067 eV Total energy + Delta-G solvation = -3203.590222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21826 -37.87992 -37.45480 -34.18535 -33.49788 -31.46656 -29.86654 -28.93148 -27.79897 -27.47671 -26.21221 -24.09948 -21.69127 -21.04155 -20.66670 -20.46234 -18.46592 -17.46056 -16.32968 -16.30816 -15.54377 -15.50232 -15.28453 -14.87510 -14.61539 -14.18787 -14.04429 -13.53996 -13.37802 -13.11287 -12.85441 -12.56805 -12.52466 -12.16535 -11.96142 -11.83166 -11.72030 -11.53906 -11.43361 -11.30771 -11.26880 -11.03841 -10.94603 -10.70246 -10.49533 -10.06950 -10.01289 -9.75119 -9.19472 -9.10646 -8.60210 -8.49378 -8.39586 -6.01506 -4.00016 3.06286 3.14806 3.39347 3.46009 3.57834 3.92376 4.41113 4.45326 4.52791 4.68298 4.80220 4.93741 5.00267 5.13729 5.16339 5.20699 5.27180 5.33487 5.34225 5.35212 5.38586 5.42781 5.45055 5.50781 5.65835 5.70175 5.70799 5.73981 5.86195 5.88083 5.99960 6.05064 6.10486 6.11826 6.12580 6.19651 6.66746 6.71770 6.82042 6.91119 7.38033 7.46701 7.68603 7.81655 8.51469 8.66698 9.01511 9.61886 11.11361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.004593 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.201947 B = 6095.055542 C = 7278.640407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.026 3.974 4 C 0.037 3.963 5 C 0.119 3.881 6 N -0.617 5.617 7 C 0.511 3.489 8 O -0.534 6.534 9 C -0.121 4.121 10 C 0.002 3.998 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.904 5.904 15 Si 0.876 3.124 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.260 1.260 19 C 0.132 3.868 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.147 4.147 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.025 0.975 37 H 0.017 0.983 38 H 0.263 0.737 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.306 11.546 -5.462 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.269 5.269 3 C -0.122 4.122 4 C -0.092 4.092 5 C -0.004 4.004 6 N -0.351 5.351 7 C 0.302 3.698 8 O -0.409 6.409 9 C -0.161 4.161 10 C -0.036 4.036 11 C -0.562 4.562 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.185 1.185 19 C 0.028 3.972 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.186 4.186 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.584 11.319 -6.376 24.341 hybrid contribution 0.318 0.655 0.182 0.750 sum -20.266 11.974 -6.194 24.340 Atomic orbital electron populations 1.22448 0.87680 1.02248 1.00298 1.61864 1.07692 1.13883 1.43455 1.22368 1.01125 0.88503 1.00210 1.22726 1.01210 0.94261 0.90969 1.21269 0.98442 0.89801 0.90926 1.48178 1.12488 1.55268 1.19174 1.21557 0.80269 0.77763 0.90260 1.90657 1.60130 1.56301 1.33797 1.21695 1.00095 0.99894 0.94431 1.19373 0.89349 0.97141 0.97754 1.21108 0.95347 1.38008 1.01711 0.90979 1.24958 0.97918 0.94417 0.95871 1.69907 1.13510 1.41244 1.29644 0.86815 0.80264 0.78149 0.84462 1.20280 1.21434 1.18459 1.21894 0.91681 0.96378 0.87222 1.22804 0.94193 1.00618 0.99949 1.22468 0.98163 0.95746 0.99665 1.22320 0.95349 0.96855 1.01436 1.22789 0.96060 0.98369 1.01338 0.95749 0.91491 0.91234 0.91165 0.91388 0.95790 0.94128 0.90254 0.89570 0.90696 0.89891 0.89649 0.95695 0.96488 0.92741 0.87861 0.90850 0.90845 0.91091 0.91549 0.91664 0.92076 0.90830 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.07 0.56 0.75 16 2 N -0.54 -6.09 5.02 -251.26 -1.26 -7.35 16 3 C 0.03 0.25 9.57 60.07 0.57 0.83 16 4 C 0.04 0.46 4.92 -3.83 -0.02 0.44 16 5 C 0.12 1.53 4.75 -4.04 -0.02 1.51 16 6 N -0.62 -8.76 2.39 -164.84 -0.39 -9.15 16 7 C 0.51 9.60 7.62 -10.99 -0.08 9.52 16 8 O -0.53 -12.06 15.62 5.56 0.09 -11.98 16 9 C -0.12 -2.41 3.97 -27.88 -0.11 -2.52 16 10 C 0.00 0.04 3.35 -27.88 -0.09 -0.05 16 11 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 12 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 15 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 19 C 0.13 1.51 3.15 -66.81 -0.21 1.30 16 20 C -0.14 -1.29 6.34 -25.03 -0.16 -1.45 16 21 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16 22 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 23 C -0.15 -1.46 6.34 -25.61 -0.16 -1.62 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.07 0.57 6.50 -51.93 -0.34 0.23 16 27 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.47 5.49 -51.93 -0.29 0.18 16 31 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.09 1.32 7.53 -51.93 -0.39 0.93 16 33 H 0.07 0.79 4.49 -51.93 -0.23 0.56 16 34 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 35 H 0.09 1.58 7.73 -51.93 -0.40 1.18 16 36 H 0.02 0.66 7.10 -51.93 -0.37 0.29 16 37 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.10 1.25 5.93 -51.93 -0.31 0.94 16 40 H 0.07 0.69 5.87 -51.93 -0.30 0.39 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.82 4.73 -51.93 -0.25 0.58 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -33.29 358.06 -8.89 -42.18 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -8.33 Total: -2.88 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.49 Total: -6.98 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.88 Total: -43.87 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.29 -8.89 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360363187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.678 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds