Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46880 * 2 1 4 4 C 1.46897 * 111.00283 * 288.43470 * 3 2 1 5 5 C 1.50692 * 109.47358 * 164.20868 * 4 3 2 6 6 O 1.21283 * 120.00237 * 353.83577 * 5 4 3 7 7 N 1.34780 * 120.00230 * 173.83540 * 5 4 3 8 8 C 1.46503 * 120.00273 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47411 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47274 * 300.00222 * 9 8 7 11 11 C 1.53009 * 109.46970 * 59.99868 * 9 8 7 12 12 C 1.52998 * 109.47264 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.46833 * 179.97438 * 12 9 8 14 14 H 1.07998 * 120.00167 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99492 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99599 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00113 * 359.97438 * 15 13 12 18 18 H 1.48511 * 109.46777 * 90.00036 * 17 15 13 19 19 H 1.48499 * 109.46957 * 209.99858 * 17 15 13 20 20 H 1.48495 * 109.47385 * 330.00217 * 17 15 13 21 21 C 1.46900 * 110.99650 * 164.48284 * 3 2 1 22 22 C 1.52997 * 117.50133 * 7.57223 * 21 3 2 23 23 C 1.52997 * 60.00202 * 252.51362 * 22 21 3 24 24 H 1.08998 * 109.46849 * 178.95211 * 1 2 3 25 25 H 1.09004 * 109.46921 * 298.95204 * 1 2 3 26 26 H 1.09001 * 109.47097 * 58.95148 * 1 2 3 27 27 H 1.08998 * 109.46989 * 120.00204 * 2 1 3 28 28 H 1.09002 * 109.46922 * 240.00284 * 2 1 3 29 29 H 1.09004 * 109.47297 * 284.20790 * 4 3 2 30 30 H 1.09001 * 109.47432 * 44.20491 * 4 3 2 31 31 H 0.96998 * 119.99809 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.46581 * 300.00223 * 8 7 5 33 33 H 1.08998 * 109.46980 * 60.00212 * 8 7 5 34 34 H 1.08997 * 109.47220 * 59.99472 * 10 9 8 35 35 H 1.08996 * 109.47686 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47070 * 299.99807 * 10 9 8 37 37 H 1.09000 * 109.46796 * 60.00337 * 11 9 8 38 38 H 1.08996 * 109.46839 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.47007 * 300.00212 * 11 9 8 40 40 H 1.08994 * 109.47154 * 299.99709 * 12 9 8 41 41 H 1.08998 * 109.46893 * 60.00308 * 12 9 8 42 42 H 0.96995 * 119.99589 * 179.97438 * 16 15 13 43 43 H 1.09001 * 115.55150 * 153.28201 * 21 3 2 44 44 H 1.09005 * 117.49550 * 0.02562 * 22 21 3 45 45 H 1.08999 * 117.49957 * 145.02231 * 22 21 3 46 46 H 1.09005 * 117.49533 * 252.51244 * 23 22 21 47 47 H 1.08998 * 117.51922 * 107.48121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7863 2.0259 -1.3010 5 6 1.9321 3.5190 -1.1588 6 8 2.0926 4.0110 -0.0619 7 7 1.8842 4.3079 -2.2506 8 6 2.0266 5.7594 -2.1125 9 6 1.9353 6.4144 -3.4921 10 6 3.0527 5.8754 -4.3875 11 6 0.5780 6.0926 -4.1207 12 6 2.0834 7.9304 -3.3477 13 6 1.9941 8.5755 -4.7068 14 1 1.8462 7.9653 -5.5855 15 6 2.1014 9.9448 -4.8282 16 7 2.0240 10.5077 -6.0143 17 14 2.3565 11.0001 -3.3083 18 1 3.8111 11.1580 -3.0538 19 1 1.7440 12.3355 -3.5244 20 1 1.7175 10.3459 -2.1383 21 6 3.4410 1.4408 0.3669 22 6 4.1890 0.1128 0.5000 23 6 3.8344 0.9197 1.7506 24 1 -0.3633 -1.0275 -0.0188 25 1 -0.3633 0.4975 0.8993 26 1 -0.3633 0.5300 -0.8804 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.5142 1.6570 -2.0236 30 1 0.7798 1.7905 -1.6468 31 1 1.7555 3.9145 -3.1278 32 1 1.2302 6.1434 -1.4749 33 1 2.9933 5.9886 -1.6642 34 1 2.9468 4.7954 -4.4903 35 1 2.9875 6.3417 -5.3705 36 1 4.0196 6.1046 -3.9397 37 1 -0.2180 6.4767 -3.4828 38 1 0.5132 6.5589 -5.1038 39 1 0.4721 5.0127 -4.2235 40 1 1.2870 8.3141 -2.7100 41 1 3.0501 8.1600 -2.8997 42 1 2.0991 11.4710 -6.0997 43 1 3.9948 2.2935 -0.0259 44 1 3.6265 -0.8023 0.3149 45 1 5.2351 0.0916 0.1946 46 1 4.6473 1.4294 2.2679 47 1 3.0386 0.5358 2.3888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360424658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = -14.267717 kcal Electronic energy + Delta-G solvation = -22816.929665 eV Core-core repulsion = 19614.476855 eV Total energy + Delta-G solvation = -3202.452810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04212 -38.70157 -37.07601 -34.57681 -33.57871 -32.10628 -30.91531 -28.03122 -27.32897 -26.56451 -25.44673 -23.37587 -22.45187 -22.36894 -20.59887 -19.77214 -18.28793 -17.17825 -16.80466 -16.62487 -16.14806 -15.36836 -14.96928 -14.60006 -14.09501 -14.04613 -13.76786 -13.48386 -13.28557 -13.16986 -12.72501 -12.65736 -12.42756 -12.26537 -12.11345 -11.82457 -11.53272 -11.27255 -11.21365 -11.11674 -11.00779 -10.88709 -10.61899 -10.53063 -10.48628 -9.96987 -9.83171 -9.72702 -9.39593 -8.99484 -8.75029 -8.53657 -8.34495 -6.04580 -4.01786 2.82900 3.09383 3.31711 3.39794 3.44210 3.60588 3.81768 4.45741 4.56766 4.64599 4.74352 4.78415 4.88178 5.00643 5.12132 5.15781 5.23724 5.28262 5.40057 5.41020 5.48716 5.51650 5.53752 5.63846 5.74704 5.75663 5.91092 5.94838 6.10825 6.12463 6.19451 6.31772 6.49882 6.59051 6.70202 6.74700 6.78974 6.91659 7.01021 7.04761 7.20435 7.36894 7.71973 7.80724 8.45734 8.52936 8.99473 9.58302 11.08197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.003187 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.820125 B = 8783.588443 C = 9096.327911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 N -0.488 5.488 4 C 0.034 3.966 5 C 0.505 3.495 6 O -0.523 6.523 7 N -0.725 5.725 8 C 0.128 3.872 9 C -0.063 4.063 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.002 4.002 13 C -0.511 4.511 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.034 3.966 22 C -0.226 4.226 23 C -0.167 4.167 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.397 0.603 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.013 0.987 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -22.578 9.471 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 N -0.210 5.210 4 C -0.097 4.097 5 C 0.290 3.710 6 O -0.399 6.399 7 N -0.379 5.379 8 C 0.005 3.995 9 C -0.064 4.064 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.040 4.040 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.075 4.075 22 C -0.265 4.265 23 C -0.205 4.205 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.060 -21.766 10.534 24.181 hybrid contribution 0.572 0.142 -0.303 0.663 sum 0.632 -21.625 10.230 23.931 Atomic orbital electron populations 1.21834 0.94594 1.01508 1.02888 1.22239 0.96219 0.88513 1.01151 1.61457 1.15410 1.16379 1.27801 1.22036 1.03457 0.92812 0.91399 1.20429 0.77279 0.88596 0.84710 1.90710 1.47647 1.75714 1.25787 1.46171 1.74061 1.08250 1.09372 1.21590 1.01379 0.78001 0.98501 1.20690 0.95763 0.98004 0.91904 1.21768 0.97653 0.97717 1.01400 1.21767 0.96038 0.98289 1.02438 1.19589 0.96406 0.89665 0.98323 1.21085 1.49371 0.92041 0.92376 0.90406 1.25001 0.94797 0.98087 0.95559 1.69901 1.51076 1.10813 1.22554 0.86858 0.78681 0.79898 0.84339 1.20379 1.21499 1.18966 1.22558 0.87712 0.96435 1.00790 1.23644 1.01719 0.96778 1.04335 1.22999 1.03057 1.03292 0.91104 0.92155 0.91615 0.92586 0.90163 0.94344 0.91792 0.87640 0.76748 0.91916 0.92014 0.95043 0.90914 0.93466 0.93401 0.90924 0.95015 0.96361 0.96852 0.92797 0.86446 0.88403 0.88883 0.88498 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.99 37.16 0.37 -0.76 16 2 C 0.05 0.38 4.32 -3.82 -0.02 0.36 16 3 N -0.49 -5.34 4.27 -228.08 -0.97 -6.32 16 4 C 0.03 0.35 5.28 -4.98 -0.03 0.32 16 5 C 0.51 7.12 7.28 -10.99 -0.08 7.04 16 6 O -0.52 -9.58 15.66 5.56 0.09 -9.49 16 7 N -0.73 -9.80 4.96 -60.30 -0.30 -10.10 16 8 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 9 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 10 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 11 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 12 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 13 C -0.51 -13.62 8.21 -34.44 -0.28 -13.91 16 14 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 15 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 17 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 C 0.03 0.38 5.36 -67.71 -0.36 0.01 16 22 C -0.23 -1.91 9.54 -26.73 -0.25 -2.16 16 23 C -0.17 -1.61 9.95 -26.73 -0.27 -1.87 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 27 H 0.08 0.63 5.83 -51.93 -0.30 0.32 16 28 H 0.04 0.28 7.84 -51.93 -0.41 -0.13 16 29 H 0.06 0.55 8.05 -51.93 -0.42 0.14 16 30 H 0.11 0.91 6.26 -51.93 -0.32 0.59 16 31 H 0.40 4.47 6.16 -40.82 -0.25 4.21 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 35 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.12 1.48 7.34 -51.93 -0.38 1.09 16 44 H 0.10 0.73 5.95 -51.93 -0.31 0.42 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.10 0.90 7.63 -51.93 -0.40 0.51 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -31.41 359.42 -8.42 -39.84 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.15 Total: 2.40 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.61 Total: -12.18 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.50 Total: -42.85 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.41 -8.42 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360424658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.568 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds