Wall clock time and date at job start Tue Mar 31 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00013 * 2 1 4 4 C 1.46899 * 111.00314 * 123.95345 * 2 1 3 5 5 C 1.53002 * 109.46841 * 78.58822 * 4 2 1 6 6 C 1.53008 * 110.01512 * 171.65416 * 5 4 2 7 7 N 1.46500 * 109.46914 * 297.54864 * 6 5 4 8 8 C 1.34775 * 119.99884 * 175.19169 * 7 6 5 9 9 O 1.21283 * 119.99895 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00064 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.46989 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47112 * 179.97438 * 11 10 8 13 13 H 1.08006 * 120.00177 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99996 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47115 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47215 * 120.00196 * 16 14 12 19 19 H 1.48501 * 109.47180 * 239.99867 * 16 14 12 20 20 C 1.54269 * 110.03289 * 50.21663 * 5 4 2 21 21 C 1.54893 * 104.19308 * 264.32299 * 20 5 4 22 22 C 1.54892 * 102.74774 * 322.05778 * 21 20 5 23 23 C 1.53865 * 110.03576 * 293.04506 * 5 4 2 24 24 H 1.09005 * 109.47173 * 279.14851 * 1 2 3 25 25 H 1.09002 * 109.47868 * 39.14790 * 1 2 3 26 26 H 1.09004 * 109.46843 * 159.15091 * 1 2 3 27 27 H 1.09000 * 109.47532 * 183.95693 * 3 2 1 28 28 H 1.09000 * 109.47452 * 303.95903 * 3 2 1 29 29 H 1.09006 * 109.47227 * 63.95268 * 3 2 1 30 30 H 1.08996 * 109.47099 * 318.58995 * 4 2 1 31 31 H 1.08998 * 109.47199 * 198.58832 * 4 2 1 32 32 H 1.08996 * 109.46803 * 57.55137 * 6 5 4 33 33 H 1.09002 * 109.46664 * 177.54926 * 6 5 4 34 34 H 0.96998 * 119.99956 * 355.18643 * 7 6 5 35 35 H 1.09002 * 109.46961 * 299.99255 * 10 8 7 36 36 H 1.08998 * 109.47494 * 59.99980 * 10 8 7 37 37 H 1.08999 * 109.47505 * 299.99711 * 11 10 8 38 38 H 1.08999 * 109.47397 * 59.99887 * 11 10 8 39 39 H 0.97006 * 119.99676 * 179.97438 * 15 14 12 40 40 H 1.08995 * 110.48632 * 145.64689 * 20 5 4 41 41 H 1.08993 * 110.48895 * 22.99573 * 20 5 4 42 42 H 1.08996 * 110.75449 * 203.74085 * 21 20 5 43 43 H 1.08997 * 110.75903 * 80.36875 * 21 20 5 44 44 H 1.08996 * 110.48795 * 156.61852 * 22 21 20 45 45 H 1.08997 * 110.48333 * 279.13325 * 22 21 20 46 46 H 1.09004 * 110.03431 * 0.02562 * 23 5 4 47 47 H 1.08996 * 110.03656 * 238.56985 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.9118 -2.2619 0.8275 6 6 2.6423 -3.0622 1.9077 7 7 4.0615 -2.6989 1.9088 8 6 4.8868 -3.2081 2.8448 9 8 4.4545 -3.9667 3.6864 10 6 6.3466 -2.8339 2.8462 11 6 7.0537 -3.5428 4.0030 12 6 8.5136 -3.1691 4.0041 13 1 8.8986 -2.4932 3.2549 14 6 9.3577 -3.6893 4.9622 15 7 8.8886 -4.5112 5.8755 16 14 11.1672 -3.2255 4.9640 17 1 11.4399 -2.2915 3.8422 18 1 11.5080 -2.5663 6.2503 19 1 11.9921 -4.4496 4.8013 20 6 2.5316 -2.5505 -0.5554 21 6 1.3200 -2.5585 -1.5204 22 6 0.2160 -3.2436 -0.6772 23 6 0.4396 -2.7026 0.7501 24 1 -0.3634 0.1634 1.0146 25 1 -0.3635 0.7969 -0.6488 26 1 -0.3633 -0.9604 -0.3658 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.4062 -0.5459 2.0277 31 1 3.0350 -0.4887 1.3123 32 1 2.2089 -2.8372 2.8822 33 1 2.5402 -4.1278 1.7019 34 1 4.4072 -2.0919 1.2358 35 1 6.8003 -3.1367 1.9024 36 1 6.4451 -1.7551 2.9671 37 1 6.6000 -3.2398 4.9467 38 1 6.9553 -4.6217 3.8826 39 1 9.4826 -4.8775 6.5493 40 1 3.0266 -3.5216 -0.5564 41 1 3.2333 -1.7632 -0.8307 42 1 1.5418 -3.1420 -2.4139 43 1 1.0294 -1.5416 -1.7841 44 1 -0.7720 -2.9622 -1.0414 45 1 0.3358 -4.3268 -0.6999 46 1 -0.2153 -1.8507 0.9329 47 1 0.2458 -3.4873 1.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360726431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:15 Heat of formation + Delta-G solvation = -47.203479 kcal Electronic energy + Delta-G solvation = -23056.786129 eV Core-core repulsion = 19852.905118 eV Total energy + Delta-G solvation = -3203.881012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36909 -38.72542 -36.20078 -34.31402 -33.40556 -31.26268 -30.42635 -29.23427 -27.63335 -26.87966 -25.59176 -24.04723 -22.25216 -21.54223 -20.74793 -19.47945 -18.86827 -16.91784 -16.66728 -15.89169 -15.54034 -15.36701 -15.17976 -14.84963 -14.39738 -14.26951 -14.08674 -13.66250 -13.54324 -13.03785 -12.83505 -12.48746 -12.36973 -12.16707 -12.09447 -11.79456 -11.65397 -11.24235 -11.12470 -11.05516 -10.92970 -10.86261 -10.67736 -10.57108 -10.52985 -10.34683 -9.92343 -9.62690 -9.12595 -8.94885 -8.69008 -8.57563 -8.29686 -5.93763 -3.97902 3.33317 3.34235 3.40898 3.44287 3.64727 3.66232 4.42167 4.48796 4.50508 4.52919 4.88203 4.92493 5.08164 5.11013 5.14615 5.24105 5.34808 5.36385 5.41195 5.43164 5.52529 5.54487 5.60860 5.62619 5.65018 5.69920 5.81532 5.84815 5.95854 5.98046 6.04976 6.14710 6.24136 6.27687 6.29661 6.39245 6.76104 6.77720 6.82502 6.94315 7.77702 7.90164 7.97244 8.10443 8.42011 8.86047 9.11299 9.65509 11.17231 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.003134 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.769202 B = 8932.566939 C = 9374.178619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.536 5.536 3 C 0.022 3.978 4 C 0.064 3.936 5 C -0.066 4.066 6 C 0.133 3.867 7 N -0.742 5.742 8 C 0.508 3.492 9 O -0.537 6.537 10 C -0.130 4.130 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.319 9.557 -16.064 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.260 5.260 3 C -0.126 4.126 4 C -0.064 4.064 5 C -0.067 4.067 6 C 0.008 3.992 7 N -0.397 5.397 8 C 0.296 3.704 9 O -0.412 6.412 10 C -0.170 4.170 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.137 4.137 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.165 4.165 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.423 8.671 -15.700 26.438 hybrid contribution 0.852 0.920 0.587 1.385 sum -18.571 9.591 -15.113 25.794 Atomic orbital electron populations 1.22897 0.87882 1.03232 1.00006 1.61951 1.07663 1.13219 1.43131 1.22446 1.00954 0.88942 1.00256 1.22271 1.00393 0.92923 0.90829 1.21435 0.95601 0.93927 0.95772 1.21347 0.81311 0.98514 0.98022 1.46233 1.08818 1.50965 1.33652 1.21539 0.89482 0.79544 0.79790 1.90665 1.77838 1.35140 1.37575 1.21854 0.89142 1.02246 1.03766 1.18896 0.93625 0.95964 0.91604 1.21272 0.93759 1.28017 1.13349 0.92572 1.25032 0.98702 0.95156 0.95558 1.70013 1.35213 1.31431 1.16198 0.86542 0.85368 0.78245 0.77841 1.19747 1.21053 1.21026 1.22236 0.97641 1.00999 0.92839 1.22529 0.94914 1.01196 0.97032 1.22332 0.98730 1.00021 0.94990 1.22550 0.95172 1.01196 0.97532 0.95456 0.92172 0.89482 0.91209 0.91506 0.95839 0.94234 0.90572 0.91928 0.91776 0.76971 0.90312 0.90413 0.95874 0.95840 0.93039 0.92041 0.91191 0.92637 0.89900 0.92178 0.91907 0.90445 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 7.52 60.06 0.45 0.51 16 2 N -0.54 -4.31 3.08 -251.26 -0.77 -5.09 16 3 C 0.02 0.16 9.44 60.06 0.57 0.73 16 4 C 0.06 0.59 4.02 -3.82 -0.02 0.57 16 5 C -0.07 -0.63 0.56 -153.39 -0.09 -0.72 16 6 C 0.13 1.69 4.20 -4.04 -0.02 1.67 16 7 N -0.74 -10.55 4.92 -60.29 -0.30 -10.84 16 8 C 0.51 9.95 7.83 -10.99 -0.09 9.87 16 9 O -0.54 -12.95 15.98 5.56 0.09 -12.87 16 10 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 11 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 12 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.10 -0.92 4.71 -25.07 -0.12 -1.04 16 21 C -0.12 -0.98 6.23 -24.73 -0.15 -1.13 16 22 C -0.12 -0.96 6.02 -25.07 -0.15 -1.11 16 23 C -0.13 -1.08 5.35 -25.62 -0.14 -1.22 16 24 H 0.03 0.20 7.43 -51.93 -0.39 -0.19 16 25 H 0.06 0.37 7.81 -51.93 -0.41 -0.03 16 26 H 0.09 0.60 3.71 -51.93 -0.19 0.40 16 27 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 28 H 0.07 0.42 7.97 -51.93 -0.41 0.01 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.08 0.74 6.68 -51.93 -0.35 0.39 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.40 4.61 7.15 -40.82 -0.29 4.32 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.06 0.64 7.86 -51.93 -0.41 0.23 16 41 H 0.07 0.66 7.74 -51.93 -0.40 0.25 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.69 5.94 -51.93 -0.31 0.38 16 44 H 0.06 0.41 7.85 -51.93 -0.41 0.00 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.61 4.48 -51.93 -0.23 0.37 16 47 H 0.06 0.57 7.67 -51.93 -0.40 0.18 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -33.42 355.71 -8.69 -42.11 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.35 Total: -0.86 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.43 Total: -7.66 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.33 Total: -42.92 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.42 -8.69 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360726431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.092 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds