Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46933 * 2 1 4 4 C 1.46897 * 111.00361 * 61.05822 * 3 2 1 5 5 C 1.50696 * 109.47065 * 66.04725 * 4 3 2 6 6 O 1.21281 * 120.00249 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00304 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99799 * 0.02562 * 7 5 4 9 9 C 1.53000 * 109.46720 * 89.99818 * 8 7 5 10 10 C 1.46493 * 120.00245 * 179.97438 * 7 5 4 11 11 C 1.50710 * 109.46992 * 90.00380 * 10 7 5 12 12 H 1.07989 * 119.99812 * 359.97438 * 11 10 7 13 13 C 1.37882 * 119.99805 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99977 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99763 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47166 * 89.99737 * 15 13 11 17 17 H 1.48500 * 109.46805 * 210.00063 * 15 13 11 18 18 H 1.48504 * 109.46823 * 329.99727 * 15 13 11 19 19 C 1.46904 * 110.99948 * 297.10483 * 3 2 1 20 20 C 1.53003 * 109.47044 * 288.32528 * 19 3 2 21 21 C 1.53784 * 113.61407 * 273.50565 * 20 19 3 22 22 C 1.53951 * 87.02026 * 220.05268 * 21 20 19 23 23 C 1.53783 * 87.11338 * 25.36100 * 22 21 20 24 24 H 1.09002 * 109.46822 * 182.12212 * 1 2 3 25 25 H 1.09002 * 109.47521 * 302.12471 * 1 2 3 26 26 H 1.08997 * 109.46834 * 62.12505 * 1 2 3 27 27 H 1.08995 * 109.47274 * 240.00001 * 2 1 3 28 28 H 1.09006 * 109.47273 * 119.99016 * 2 1 3 29 29 H 1.09001 * 109.47486 * 186.04712 * 4 3 2 30 30 H 1.09002 * 109.47454 * 306.04846 * 4 3 2 31 31 H 1.08997 * 109.47235 * 209.99753 * 8 7 5 32 32 H 1.08997 * 109.46934 * 330.00058 * 8 7 5 33 33 H 1.09000 * 109.47699 * 299.99873 * 9 8 7 34 34 H 1.08997 * 109.47221 * 60.00416 * 9 8 7 35 35 H 1.09005 * 109.47082 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47553 * 210.00094 * 10 7 5 37 37 H 1.09002 * 109.47342 * 330.00209 * 10 7 5 38 38 H 0.97004 * 119.99748 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.47012 * 48.32168 * 19 3 2 40 40 H 1.09000 * 109.47464 * 168.32162 * 19 3 2 41 41 H 1.08998 * 112.84924 * 44.70320 * 20 19 3 42 42 H 1.09005 * 113.61186 * 334.56726 * 21 20 19 43 43 H 1.08992 * 113.61430 * 105.46760 * 21 20 19 44 44 H 1.08997 * 113.53236 * 270.81355 * 22 21 20 45 45 H 1.08995 * 113.66990 * 139.93198 * 22 21 20 46 46 H 1.08999 * 113.61776 * 220.09382 * 23 22 21 47 47 H 1.08996 * 113.68748 * 89.19839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5694 2.1026 1.2001 5 6 2.2130 1.4949 2.4197 6 8 2.9723 0.5567 2.3009 7 7 1.9456 1.9946 3.6425 8 6 1.0288 3.1283 3.7861 9 6 -0.3992 2.6096 3.9668 10 6 2.5707 1.4035 4.8282 11 6 3.8781 2.0997 5.1066 12 1 4.2102 2.9018 4.4643 13 6 4.6507 1.7117 6.1807 14 7 4.2464 0.7345 6.9626 15 14 6.2715 2.5740 6.5253 16 1 6.0357 3.7282 7.4294 17 1 7.2107 1.6226 7.1717 18 1 6.8565 3.0568 5.2486 19 6 1.6059 2.0896 -1.2208 20 6 2.4007 1.5534 -2.4133 21 6 3.7543 2.2543 -2.6167 22 6 3.4645 2.1997 -4.1277 23 6 1.9717 2.1571 -3.7610 24 1 -0.3633 -1.0270 0.0381 25 1 -0.3634 0.5465 0.8703 26 1 -0.3633 0.4805 -0.9084 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.8538 3.1521 1.1241 30 1 0.4854 2.0252 1.2846 31 1 1.3140 3.7182 4.6571 32 1 1.0788 3.7513 2.8931 33 1 -0.6845 2.0196 3.0957 34 1 -0.4492 1.9866 4.8597 35 1 -1.0815 3.4530 4.0731 36 1 1.9074 1.5202 5.6852 37 1 2.7538 0.3435 4.6522 38 1 4.7902 0.4613 7.7180 39 1 0.5415 1.9273 -1.3911 40 1 1.7971 3.1567 -1.1070 41 1 2.4664 0.4655 -2.4233 42 1 3.7864 3.2670 -2.2147 43 1 4.6089 1.6500 -2.3129 44 1 3.8225 1.2885 -4.6069 45 1 3.7572 3.1034 -4.6623 46 1 1.3893 1.4743 -4.3797 47 1 1.5143 3.1425 -3.6722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361481721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -11.984467 kcal Electronic energy + Delta-G solvation = -23397.352008 eV Core-core repulsion = 20194.998207 eV Total energy + Delta-G solvation = -3202.353801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72182 -38.74305 -36.68025 -35.08728 -32.76260 -30.41875 -30.08510 -29.25189 -27.10923 -25.67959 -25.33372 -23.56679 -22.98812 -22.38600 -20.34147 -19.24584 -18.10703 -16.65171 -16.30323 -15.99207 -15.70828 -15.45676 -14.90831 -14.58634 -14.28487 -14.06847 -13.53779 -13.35636 -13.02825 -12.77016 -12.51133 -12.46869 -12.33331 -12.13276 -11.95907 -11.75891 -11.54899 -11.45083 -11.16519 -11.11997 -10.88170 -10.69400 -10.66707 -10.52480 -10.41728 -10.27165 -10.13870 -10.07250 -9.56171 -8.75885 -8.39165 -7.97382 -7.56564 -5.99887 -4.04046 3.33132 3.39809 3.44062 3.53842 3.72780 4.25248 4.49812 4.58681 4.65985 4.73483 4.88297 5.10518 5.16827 5.27100 5.30728 5.34932 5.38148 5.43276 5.48069 5.52161 5.61811 5.63567 5.66240 5.69064 5.71128 5.78207 5.81629 5.86591 6.01902 6.04874 6.10161 6.14413 6.24835 6.26603 6.43876 6.48890 6.52977 7.04341 7.24607 7.31070 7.50540 7.63220 7.97544 8.29250 8.51558 8.96765 9.22099 9.61170 11.08138 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.004290 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.871045 B = 6525.012130 C = 7379.756547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 N -0.513 5.513 4 C 0.033 3.967 5 C 0.508 3.492 6 O -0.524 6.524 7 N -0.601 5.601 8 C 0.107 3.893 9 C -0.168 4.168 10 C 0.248 3.752 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.060 3.940 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.137 4.137 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 4.470 -17.365 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.086 4.086 3 N -0.236 5.236 4 C -0.098 4.098 5 C 0.294 3.706 6 O -0.400 6.400 7 N -0.334 5.334 8 C -0.017 4.017 9 C -0.227 4.227 10 C 0.129 3.871 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.068 4.068 20 C -0.120 4.120 21 C -0.164 4.164 22 C -0.183 4.183 23 C -0.175 4.175 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.906 3.842 -17.229 19.771 hybrid contribution -0.080 0.601 0.353 0.701 sum -8.987 4.443 -16.875 19.629 Atomic orbital electron populations 1.22448 0.99170 1.02199 1.01341 1.22360 0.91783 0.90120 1.04296 1.61836 1.59469 1.02144 1.00173 1.22128 0.98311 0.98884 0.90518 1.20136 0.82347 0.84211 0.83955 1.90624 1.35567 1.28365 1.85402 1.48259 1.44761 1.32522 1.07840 1.21382 0.88833 0.89254 1.02255 1.22224 0.96994 1.01299 1.02167 1.19222 0.92265 0.95036 0.80552 1.21456 1.04909 1.18454 1.11418 0.92492 1.24930 0.98078 0.95116 0.95993 1.69935 1.38542 1.28115 1.16948 0.86513 0.83484 0.79188 0.78341 1.20713 1.21127 1.19868 1.22201 0.97010 0.97965 0.89593 1.22502 0.96296 1.00294 0.92882 1.22882 0.97728 1.00915 0.94890 1.22857 0.96477 1.01678 0.97239 1.22935 0.96570 1.01044 0.96994 0.92179 0.92657 0.92851 0.91087 0.88224 0.88924 0.92334 0.89999 0.91968 0.93328 0.92022 0.92260 0.95213 0.94006 0.92802 0.94429 0.91157 0.89128 0.90326 0.91339 0.90501 0.91816 0.91884 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 9.28 37.16 0.34 -1.97 16 2 C 0.04 0.61 5.58 -3.82 -0.02 0.59 16 3 N -0.51 -7.69 4.41 -236.07 -1.04 -8.73 16 4 C 0.03 0.50 3.77 -4.98 -0.02 0.49 16 5 C 0.51 10.64 7.39 -10.99 -0.08 10.56 16 6 O -0.52 -13.25 13.90 5.56 0.08 -13.17 16 7 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 8 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 9 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 10 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 11 C -0.52 -15.04 9.39 -34.43 -0.32 -15.36 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 15 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.06 0.70 4.66 -3.82 -0.02 0.68 16 20 C -0.10 -1.08 3.75 -89.80 -0.34 -1.42 16 21 C -0.13 -1.39 7.65 -25.83 -0.20 -1.59 16 22 C -0.15 -1.30 8.09 -25.83 -0.21 -1.51 16 23 C -0.14 -1.20 7.65 -25.92 -0.20 -1.40 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.70 6.19 -51.93 -0.32 0.38 16 26 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 27 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 28 H 0.10 1.82 5.86 -51.93 -0.30 1.52 16 29 H 0.09 1.31 7.12 -51.93 -0.37 0.94 16 30 H 0.06 0.80 5.04 -51.93 -0.26 0.53 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 33 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.04 0.40 5.92 -51.92 -0.31 0.09 16 40 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 41 H 0.09 1.04 6.55 -51.93 -0.34 0.70 16 42 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -32.47 362.30 -9.28 -41.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.23 Total: -0.20 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.83 Total: -2.94 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.73 Total: -48.07 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.47 -9.28 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361481721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.760 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds