Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46933 * 2 1 4 4 C 1.46897 * 111.00361 * 61.05822 * 3 2 1 5 5 C 1.50696 * 109.47065 * 66.04725 * 4 3 2 6 6 O 1.21281 * 120.00249 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00304 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99799 * 0.02562 * 7 5 4 9 9 C 1.53000 * 109.46720 * 89.99818 * 8 7 5 10 10 C 1.46493 * 120.00245 * 179.97438 * 7 5 4 11 11 C 1.50710 * 109.46992 * 90.00380 * 10 7 5 12 12 H 1.07989 * 119.99812 * 359.97438 * 11 10 7 13 13 C 1.37882 * 119.99805 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99977 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99763 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47166 * 89.99737 * 15 13 11 17 17 H 1.48500 * 109.46805 * 210.00063 * 15 13 11 18 18 H 1.48504 * 109.46823 * 329.99727 * 15 13 11 19 19 C 1.46904 * 110.99948 * 297.10483 * 3 2 1 20 20 C 1.53003 * 109.47044 * 288.32528 * 19 3 2 21 21 C 1.53784 * 113.61407 * 273.50565 * 20 19 3 22 22 C 1.53951 * 87.02026 * 220.05268 * 21 20 19 23 23 C 1.53783 * 87.11338 * 25.36100 * 22 21 20 24 24 H 1.09002 * 109.46822 * 182.12212 * 1 2 3 25 25 H 1.09002 * 109.47521 * 302.12471 * 1 2 3 26 26 H 1.08997 * 109.46834 * 62.12505 * 1 2 3 27 27 H 1.08995 * 109.47274 * 240.00001 * 2 1 3 28 28 H 1.09006 * 109.47273 * 119.99016 * 2 1 3 29 29 H 1.09001 * 109.47486 * 186.04712 * 4 3 2 30 30 H 1.09002 * 109.47454 * 306.04846 * 4 3 2 31 31 H 1.08997 * 109.47235 * 209.99753 * 8 7 5 32 32 H 1.08997 * 109.46934 * 330.00058 * 8 7 5 33 33 H 1.09000 * 109.47699 * 299.99873 * 9 8 7 34 34 H 1.08997 * 109.47221 * 60.00416 * 9 8 7 35 35 H 1.09005 * 109.47082 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47553 * 210.00094 * 10 7 5 37 37 H 1.09002 * 109.47342 * 330.00209 * 10 7 5 38 38 H 0.97004 * 119.99748 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.47012 * 48.32168 * 19 3 2 40 40 H 1.09000 * 109.47464 * 168.32162 * 19 3 2 41 41 H 1.08998 * 112.84924 * 44.70320 * 20 19 3 42 42 H 1.09005 * 113.61186 * 334.56726 * 21 20 19 43 43 H 1.08992 * 113.61430 * 105.46760 * 21 20 19 44 44 H 1.08997 * 113.53236 * 270.81355 * 22 21 20 45 45 H 1.08995 * 113.66990 * 139.93198 * 22 21 20 46 46 H 1.08999 * 113.61776 * 220.09382 * 23 22 21 47 47 H 1.08996 * 113.68748 * 89.19839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5694 2.1026 1.2001 5 6 2.2130 1.4949 2.4197 6 8 2.9723 0.5567 2.3009 7 7 1.9456 1.9946 3.6425 8 6 1.0288 3.1283 3.7861 9 6 -0.3992 2.6096 3.9668 10 6 2.5707 1.4035 4.8282 11 6 3.8781 2.0997 5.1066 12 1 4.2102 2.9018 4.4643 13 6 4.6507 1.7117 6.1807 14 7 4.2464 0.7345 6.9626 15 14 6.2715 2.5740 6.5253 16 1 6.0357 3.7282 7.4294 17 1 7.2107 1.6226 7.1717 18 1 6.8565 3.0568 5.2486 19 6 1.6059 2.0896 -1.2208 20 6 2.4007 1.5534 -2.4133 21 6 3.7543 2.2543 -2.6167 22 6 3.4645 2.1997 -4.1277 23 6 1.9717 2.1571 -3.7610 24 1 -0.3633 -1.0270 0.0381 25 1 -0.3634 0.5465 0.8703 26 1 -0.3633 0.4805 -0.9084 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.8538 3.1521 1.1241 30 1 0.4854 2.0252 1.2846 31 1 1.3140 3.7182 4.6571 32 1 1.0788 3.7513 2.8931 33 1 -0.6845 2.0196 3.0957 34 1 -0.4492 1.9866 4.8597 35 1 -1.0815 3.4530 4.0731 36 1 1.9074 1.5202 5.6852 37 1 2.7538 0.3435 4.6522 38 1 4.7902 0.4613 7.7180 39 1 0.5415 1.9273 -1.3911 40 1 1.7971 3.1567 -1.1070 41 1 2.4664 0.4655 -2.4233 42 1 3.7864 3.2670 -2.2147 43 1 4.6089 1.6500 -2.3129 44 1 3.8225 1.2885 -4.6069 45 1 3.7572 3.1034 -4.6623 46 1 1.3893 1.4743 -4.3797 47 1 1.5143 3.1425 -3.6722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361481721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -32.391469 kcal Electronic energy + Delta-G solvation = -23398.236922 eV Core-core repulsion = 20194.998207 eV Total energy + Delta-G solvation = -3203.238715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05526 -39.85016 -37.84839 -36.74094 -34.89946 -31.70048 -31.46275 -30.43937 -28.80245 -26.80306 -26.30821 -24.89939 -24.39956 -23.83487 -21.45271 -20.06834 -19.67037 -18.60979 -17.96034 -17.27838 -16.97828 -16.71163 -16.26853 -15.97500 -15.51171 -15.44495 -14.78821 -14.59512 -14.47388 -14.20526 -13.77291 -13.51026 -13.47381 -13.25371 -13.22508 -13.11224 -12.98614 -12.87981 -12.67080 -12.48902 -12.38575 -12.17720 -12.06795 -11.87188 -11.72540 -11.59165 -11.37266 -11.08195 -10.96382 -10.63603 -10.38678 -9.39753 -9.04630 -8.21577 -6.36314 1.35446 1.38970 1.49328 1.91931 2.27055 2.42303 3.05048 3.07794 3.74939 3.79777 3.88459 3.92606 4.07528 4.10063 4.19563 4.21929 4.31903 4.43948 4.45954 4.50639 4.59044 4.63848 4.66738 4.71694 4.92606 4.94803 4.96009 4.98409 5.02156 5.04957 5.06211 5.14828 5.15144 5.22947 5.23186 5.36480 5.38713 5.47452 5.60068 5.69381 5.89034 6.07439 6.08974 6.27578 6.72455 6.87887 7.30462 7.59496 8.85229 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.004290 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.871045 B = 6525.012130 C = 7379.756547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.049 3.951 5 C 0.497 3.503 6 O -0.579 6.579 7 N -0.607 5.607 8 C 0.100 3.900 9 C -0.159 4.159 10 C 0.266 3.734 11 C -0.541 4.541 12 H 0.051 0.949 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.967 3.033 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.064 3.936 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.124 4.124 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.096 0.904 36 H 0.020 0.980 37 H -0.007 1.007 38 H 0.267 0.733 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 6.894 -19.301 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.082 4.082 5 C 0.285 3.715 6 O -0.459 6.459 7 N -0.339 5.339 8 C -0.023 4.023 9 C -0.218 4.218 10 C 0.144 3.856 11 C -0.580 4.580 12 H 0.070 0.930 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.063 4.063 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.177 4.177 23 C -0.161 4.161 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.011 0.989 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.309 6.306 -19.180 22.670 hybrid contribution 0.351 -0.197 0.950 1.031 sum -9.958 6.109 -18.231 21.653 Atomic orbital electron populations 1.22343 0.96760 1.02863 1.02143 1.22185 0.93714 0.89997 1.02369 1.61761 1.60730 1.02449 1.01211 1.22017 0.99100 0.99101 0.87962 1.21228 0.81638 0.83437 0.85184 1.90601 1.38153 1.30851 1.86311 1.48295 1.45323 1.33703 1.06614 1.21724 0.89075 0.87858 1.03598 1.22146 0.95781 1.02384 1.01448 1.18627 0.91986 0.92567 0.82397 1.21723 1.06098 1.18558 1.11595 0.93038 1.25856 1.01840 0.95761 0.95697 1.70056 1.40071 1.29357 1.17436 0.85425 0.78641 0.78521 0.78275 1.18645 1.20633 1.19933 1.22274 0.98038 0.98040 0.87939 1.22520 0.96238 0.99696 0.93993 1.22936 0.97193 1.00496 0.96833 1.22836 0.96857 1.02306 0.95673 1.22882 0.96355 1.01685 0.95216 0.91641 0.93152 0.90542 0.90400 0.92819 0.86793 0.89575 0.91049 0.88321 0.92417 0.94379 0.88535 0.96240 0.98867 0.92458 0.92616 0.90145 0.90299 0.90342 0.93658 0.90368 0.90735 0.90795 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 9.28 71.98 0.67 -3.36 16 2 C 0.05 1.32 5.58 86.30 0.48 1.80 16 3 N -0.54 -15.53 4.41 -900.78 -3.97 -19.50 16 4 C 0.05 1.42 3.77 85.56 0.32 1.75 16 5 C 0.50 21.25 7.39 87.66 0.65 21.90 16 6 O -0.58 -31.07 13.90 -3.03 -0.04 -31.11 16 7 N -0.61 -26.28 2.46 -826.15 -2.03 -28.31 16 8 C 0.10 3.06 5.93 86.38 0.51 3.58 16 9 C -0.16 -3.94 10.24 71.98 0.74 -3.21 16 10 C 0.27 14.76 5.16 85.64 0.44 15.20 16 11 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 12 H 0.05 3.04 7.81 -2.92 -0.02 3.01 16 13 C 0.01 0.42 5.46 84.66 0.46 0.89 16 14 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 15 Si 0.97 46.06 29.54 68.60 2.03 48.08 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 19 C 0.06 1.30 4.66 86.30 0.40 1.70 16 20 C -0.11 -2.07 3.75 -10.26 -0.04 -2.11 16 21 C -0.14 -2.87 7.65 31.18 0.24 -2.63 16 22 C -0.14 -2.20 8.09 31.18 0.25 -1.95 16 23 C -0.12 -1.76 7.65 31.12 0.24 -1.52 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.15 6.19 -2.39 -0.01 1.14 16 26 H 0.08 1.34 6.34 -2.39 -0.02 1.33 16 27 H 0.08 2.10 6.50 -2.39 -0.02 2.08 16 28 H 0.05 2.08 5.86 -2.38 -0.01 2.07 16 29 H 0.11 2.85 7.12 -2.39 -0.02 2.84 16 30 H 0.09 2.06 5.04 -2.39 -0.01 2.05 16 31 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 32 H 0.10 2.31 6.44 -2.39 -0.02 2.30 16 33 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 37 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.06 0.95 5.92 -2.38 -0.01 0.93 16 40 H 0.08 1.49 7.54 -2.39 -0.02 1.47 16 41 H 0.08 1.73 6.55 -2.39 -0.02 1.72 16 42 H 0.08 1.62 7.91 -2.38 -0.02 1.60 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -75.38 362.30 2.81 -72.58 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.93 Total: 15.30 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.61 Total: 0.17 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -5.71 Total: -105.02 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.04 Total: -31.11 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.38 2.81 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361481721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.186 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds