Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00047 * 2 1 4 4 C 1.53001 * 109.46691 * 296.50819 * 3 2 1 5 5 N 1.46897 * 109.47232 * 294.27953 * 4 3 2 6 6 C 1.46896 * 110.99944 * 202.35171 * 5 4 3 7 7 C 1.53243 * 109.34296 * 172.74536 * 6 5 4 8 8 N 1.47079 * 108.51916 * 53.82551 * 7 6 5 9 9 C 1.36937 * 120.87919 * 128.84210 * 8 7 6 10 10 H 1.08004 * 119.99814 * 211.80464 * 9 8 7 11 11 C 1.38808 * 120.00345 * 31.80087 * 9 8 7 12 12 N 1.31622 * 119.99759 * 8.56056 * 11 9 8 13 13 Si 1.86802 * 120.00168 * 188.55866 * 11 9 8 14 14 H 1.48500 * 109.47063 * 59.99831 * 13 11 9 15 15 H 1.48497 * 109.47045 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47063 * 299.99994 * 13 11 9 17 17 C 1.47087 * 118.23878 * 308.81730 * 8 7 6 18 18 C 1.46893 * 111.00117 * 78.04589 * 5 4 3 19 19 C 1.53002 * 109.47279 * 56.50665 * 3 2 1 20 20 C 1.53003 * 109.46952 * 60.00086 * 19 3 2 21 21 C 1.52998 * 109.47135 * 60.00323 * 20 19 3 22 22 C 1.53007 * 109.46737 * 299.99960 * 21 20 19 23 23 C 1.52991 * 109.47392 * 59.99833 * 22 21 20 24 24 H 1.08995 * 109.46831 * 63.64444 * 1 2 3 25 25 H 1.08996 * 109.47046 * 183.64809 * 1 2 3 26 26 H 1.09000 * 109.46966 * 303.64887 * 1 2 3 27 27 H 1.09003 * 109.47348 * 54.27957 * 4 3 2 28 28 H 1.09004 * 109.46647 * 174.27614 * 4 3 2 29 29 H 1.09003 * 109.49509 * 292.70285 * 6 5 4 30 30 H 1.09000 * 109.49672 * 52.78570 * 6 5 4 31 31 H 1.09000 * 109.62371 * 294.12152 * 7 6 5 32 32 H 1.09000 * 109.63041 * 173.53550 * 7 6 5 33 33 H 0.97003 * 119.99830 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.62585 * 291.47519 * 17 8 7 35 35 H 1.09002 * 109.62552 * 170.89271 * 17 8 7 36 36 H 1.09001 * 109.49598 * 307.21132 * 18 5 4 37 37 H 1.08997 * 109.49177 * 67.29560 * 18 5 4 38 38 H 1.08996 * 109.47140 * 300.00350 * 19 3 2 39 39 H 1.08996 * 109.47095 * 180.02562 * 19 3 2 40 40 H 1.09004 * 109.46928 * 300.00155 * 20 19 3 41 41 H 1.09003 * 109.47070 * 179.97438 * 20 19 3 42 42 H 1.08996 * 109.47566 * 59.99284 * 21 20 19 43 43 H 1.08995 * 109.47518 * 180.02562 * 21 20 19 44 44 H 1.09008 * 109.46880 * 180.02562 * 22 21 20 45 45 H 1.09006 * 109.47007 * 299.99706 * 22 21 20 46 46 H 1.08999 * 109.47365 * 179.97438 * 23 22 21 47 47 H 1.09006 * 109.47149 * 59.99959 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6295 2.0332 -1.2909 5 7 2.2439 1.3505 -2.4373 6 6 2.3639 2.2568 -3.5872 7 6 3.1684 1.5678 -4.6947 8 7 2.5421 0.2699 -4.9885 9 6 2.2270 -0.0837 -6.2734 10 1 1.3718 -0.7146 -6.4655 11 6 3.0067 0.3690 -7.3288 12 7 4.1398 0.9943 -7.0891 13 14 2.4478 0.0906 -9.0894 14 1 1.1358 0.7527 -9.3028 15 1 3.4499 0.6639 -10.0234 16 1 2.3137 -1.3667 -9.3416 17 6 2.2638 -0.6386 -3.8657 18 6 1.4949 0.1374 -2.7909 19 6 1.4905 2.0952 1.2030 20 6 1.8713 1.3675 2.4939 21 6 3.3940 1.2478 2.5817 22 6 3.9138 0.4581 1.3787 23 6 3.5330 1.1858 0.0879 24 1 -0.3633 0.4562 -0.9208 25 1 -0.3633 -1.0255 0.0654 26 1 -0.3633 0.5694 0.8555 27 1 0.5454 2.0292 -1.4040 28 1 1.9864 3.0622 -1.2467 29 1 1.3702 2.5049 -3.9601 30 1 2.8756 3.1688 -3.2797 31 1 4.1938 1.4121 -4.3595 32 1 3.1632 2.1881 -5.5910 33 1 4.6848 1.3103 -7.8267 34 1 3.2023 -1.0063 -3.4510 35 1 1.6605 -1.4770 -4.2140 36 1 1.3764 -0.4878 -1.9059 37 1 0.5133 0.4149 -3.1748 38 1 0.4057 2.1805 1.1404 39 1 1.9335 3.0911 1.2027 40 1 1.4279 0.3717 2.4938 41 1 1.5014 1.9303 3.3509 42 1 3.8374 2.2435 2.5816 43 1 3.6653 0.7289 3.5011 44 1 4.9987 0.3724 1.4415 45 1 3.4704 -0.5377 1.3787 46 1 3.9036 0.6234 -0.7691 47 1 3.9763 2.1816 0.0878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361575398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -23.873510 kcal Electronic energy + Delta-G solvation = -24441.022202 eV Core-core repulsion = 21238.152853 eV Total energy + Delta-G solvation = -3202.869348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14684 -37.51373 -35.79131 -34.18783 -31.61277 -30.82268 -30.28494 -29.69785 -26.95537 -26.45673 -24.49396 -22.66475 -22.53968 -22.15734 -20.62372 -19.48963 -18.97808 -16.69825 -16.22317 -15.62489 -15.52123 -14.93651 -14.79171 -14.31400 -14.05812 -13.85790 -13.49240 -13.33410 -13.23096 -13.03936 -12.70145 -12.42801 -12.16120 -11.95339 -11.81927 -11.42973 -11.32495 -11.05240 -11.00880 -10.92052 -10.70001 -10.50862 -10.44650 -10.29908 -10.23239 -9.99827 -9.82628 -9.71724 -9.62844 -9.06620 -8.44223 -7.61406 -6.49372 -5.71438 -3.19106 3.41055 3.45961 3.47040 3.89086 4.40005 4.54259 4.75321 4.76737 4.89817 5.13014 5.27203 5.32652 5.35454 5.44327 5.48550 5.54089 5.56097 5.61087 5.62962 5.67253 5.68721 5.79248 5.87601 5.95393 6.04142 6.08386 6.12824 6.18117 6.22487 6.32931 6.38056 6.39835 6.50621 6.53289 6.64903 6.70344 6.87201 7.07868 7.36845 7.42504 7.73340 7.76741 7.82131 7.91570 8.54603 9.30063 9.91458 10.53166 11.36795 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035608 B = 0.004149 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.150308 B = 6746.442570 C = 6970.614778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.362 6.362 3 C 0.130 3.870 4 C 0.029 3.971 5 N -0.520 5.520 6 C 0.033 3.967 7 C 0.182 3.818 8 N -0.596 5.596 9 C -0.252 4.252 10 H 0.061 0.939 11 C 0.004 3.996 12 N -0.906 5.906 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.150 3.850 18 C 0.034 3.966 19 C -0.146 4.146 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.092 4.092 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.024 0.976 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 2.505 18.626 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.281 6.281 3 C 0.090 3.910 4 C -0.100 4.100 5 N -0.244 5.244 6 C -0.096 4.096 7 C 0.056 3.944 8 N -0.319 5.319 9 C -0.382 4.382 10 H 0.079 0.921 11 C -0.194 4.194 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.024 3.976 18 C -0.095 4.095 19 C -0.184 4.184 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.130 4.130 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.034 0.966 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.245 2.255 18.598 19.209 hybrid contribution -1.397 0.523 -1.241 1.941 sum -5.643 2.779 17.357 18.462 Atomic orbital electron populations 1.22777 0.82639 1.02230 0.99920 1.87978 1.18450 1.27462 1.94244 1.21499 0.94642 0.82879 0.91942 1.22681 0.96899 0.97909 0.92541 1.61880 1.50521 1.06559 1.05425 1.22959 0.99289 0.95004 0.92363 1.20822 0.92749 0.86775 0.94077 1.44057 1.72132 1.13680 1.02077 1.19129 1.06774 1.29641 0.82615 0.92094 1.25181 0.95116 1.00834 0.98271 1.69955 1.12268 1.42416 1.30410 0.86356 0.77593 0.77999 0.84669 1.21125 1.21600 1.20894 1.20985 0.96559 0.92121 0.87974 1.22968 0.94376 0.92394 0.99792 1.22137 1.00883 0.99776 0.95599 1.21416 0.96442 1.00779 0.96327 1.21532 0.95476 1.00232 0.98286 1.21512 0.99963 0.99865 0.94221 1.21351 0.91898 1.01162 0.98566 0.94036 0.90052 0.94172 0.95170 0.90982 0.96198 0.92491 0.95645 0.89633 0.93615 0.95770 0.93080 0.89280 0.96613 0.91965 0.91135 0.91547 0.92643 0.92436 0.92534 0.92422 0.91324 0.89144 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.27 101.05 0.94 1.17 16 2 O -0.36 -4.94 6.77 -35.23 -0.24 -5.18 16 3 C 0.13 1.67 0.47 -90.62 -0.04 1.62 16 4 C 0.03 0.42 4.06 -3.83 -0.02 0.41 16 5 N -0.52 -9.44 3.53 -234.32 -0.83 -10.26 16 6 C 0.03 0.67 5.58 -3.70 -0.02 0.65 16 7 C 0.18 4.52 5.35 -3.60 -0.02 4.50 16 8 N -0.60 -15.63 3.02 -172.00 -0.52 -16.15 16 9 C -0.25 -7.13 9.61 -15.06 -0.14 -7.27 16 10 H 0.06 1.70 7.84 -52.48 -0.41 1.28 16 11 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 12 N -0.91 -26.76 11.03 55.49 0.61 -26.14 16 13 Si 0.90 22.07 29.56 -169.99 -5.03 17.05 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 C 0.15 3.38 6.69 -3.60 -0.02 3.36 16 18 C 0.03 0.64 4.55 -3.70 -0.02 0.62 16 19 C -0.15 -1.52 4.25 -26.73 -0.11 -1.64 16 20 C -0.11 -1.08 5.78 -26.73 -0.15 -1.24 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 22 C -0.12 -1.36 5.78 -26.73 -0.15 -1.51 16 23 C -0.09 -1.22 4.72 -26.74 -0.13 -1.35 16 24 H 0.04 0.51 5.77 -51.93 -0.30 0.21 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.39 6.16 -51.93 -0.32 0.07 16 27 H 0.03 0.45 6.25 -51.93 -0.32 0.12 16 28 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.34 6.25 -51.93 -0.32 2.02 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 36 H 0.09 1.56 4.57 -51.93 -0.24 1.32 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 45 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 46 H 0.09 1.46 7.46 -51.93 -0.39 1.08 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -29.84 339.90 -9.47 -39.30 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.44 Total: -1.78 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.14 Total: -1.95 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.74 Total: -52.56 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.24 Total: -5.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.84 -9.47 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361575398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.428 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds