Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99805 * 2 1 4 4 C 1.53000 * 109.47266 * 293.95212 * 3 2 1 5 5 C 1.50703 * 109.47371 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99709 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00008 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00167 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46718 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46937 * 119.99660 * 9 7 5 12 12 H 1.48489 * 109.47240 * 240.00123 * 9 7 5 13 13 C 1.46898 * 110.99996 * 123.95578 * 2 1 3 14 14 C 1.53003 * 109.46943 * 181.24803 * 13 2 1 15 15 C 1.53005 * 109.47038 * 301.24321 * 13 2 1 16 16 C 1.52996 * 109.47534 * 61.24751 * 13 2 1 17 17 N 1.46908 * 109.46979 * 64.86506 * 16 13 2 18 18 C 1.47998 * 110.99747 * 291.89259 * 17 16 13 19 19 C 1.50451 * 112.82265 * 191.34729 * 18 17 16 20 20 C 1.54308 * 108.50052 * 93.73221 * 19 18 17 21 21 C 1.45885 * 112.18223 * 281.46057 * 20 19 18 22 22 C 1.54310 * 112.18382 * 61.12124 * 21 20 19 23 23 C 1.47997 * 110.99820 * 163.17293 * 17 16 13 24 24 H 1.08996 * 109.47156 * 60.88130 * 1 2 3 25 25 H 1.09001 * 109.46798 * 180.87885 * 1 2 3 26 26 H 1.08995 * 109.46893 * 300.87989 * 1 2 3 27 27 H 1.08998 * 109.47643 * 53.95415 * 3 2 1 28 28 H 1.09008 * 109.47142 * 173.95567 * 3 2 1 29 29 H 1.08997 * 109.47641 * 300.00320 * 4 3 2 30 30 H 1.08999 * 109.46903 * 59.99947 * 4 3 2 31 31 H 0.96998 * 120.00254 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46948 * 59.99822 * 14 13 2 33 33 H 1.08997 * 109.47414 * 179.97438 * 14 13 2 34 34 H 1.08997 * 109.47000 * 299.99602 * 14 13 2 35 35 H 1.09001 * 109.46435 * 60.00259 * 15 13 2 36 36 H 1.09000 * 109.46641 * 180.02562 * 15 13 2 37 37 H 1.08992 * 109.47440 * 300.00546 * 15 13 2 38 38 H 1.08997 * 109.47542 * 184.86683 * 16 13 2 39 39 H 1.09002 * 109.47010 * 304.86762 * 16 13 2 40 40 H 1.09002 * 108.81820 * 312.20792 * 18 17 16 41 41 H 1.08999 * 108.81631 * 70.48633 * 18 17 16 42 42 H 1.09002 * 109.63282 * 334.02057 * 19 18 17 43 43 H 1.09003 * 109.62998 * 213.43059 * 19 18 17 44 44 H 1.08997 * 108.93814 * 160.76654 * 20 19 18 45 45 H 1.08993 * 108.86716 * 42.10927 * 20 19 18 46 46 H 1.09005 * 108.93782 * 300.42934 * 21 20 19 47 47 H 1.09001 * 108.93898 * 181.82015 * 21 20 19 48 48 H 1.08997 * 109.63207 * 161.76112 * 22 21 20 49 49 H 1.09006 * 109.63170 * 41.16508 * 22 21 20 50 50 H 1.08994 * 108.81153 * 205.69814 * 23 17 16 51 51 H 1.09003 * 108.81514 * 324.08597 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1709 3.4646 -1.3180 6 1 2.7190 3.8326 -0.4633 7 6 1.9648 4.2821 -2.4090 8 7 1.2971 3.8341 -3.4496 9 14 2.6342 6.0261 -2.4090 10 1 3.3433 6.2840 -1.1300 11 1 3.5802 6.1932 -3.5414 12 1 1.5117 6.9871 -2.5557 13 6 1.9955 -0.7660 1.1375 14 6 3.5246 -0.7172 1.1213 15 6 1.4797 -0.1587 2.4438 16 6 1.5305 -2.2198 1.0325 17 7 2.1212 -2.8377 -0.1624 18 6 1.5620 -2.2444 -1.3976 19 6 1.9264 -3.0200 -2.6342 20 6 0.7925 -4.0225 -2.9352 21 6 0.8584 -5.2018 -2.0791 22 6 0.7168 -4.8454 -0.5844 23 6 2.0357 -4.3136 -0.0935 24 1 -0.3633 0.5001 -0.8977 25 1 -0.3633 -1.0276 0.0158 26 1 -0.3633 0.5274 0.8820 27 1 1.5611 1.9274 0.8309 28 1 3.0798 1.3444 0.1082 29 1 2.0658 1.5016 -2.1492 30 1 0.5472 2.0844 -1.4265 31 1 1.1524 4.4091 -4.2173 32 1 3.8559 0.3186 1.1962 33 1 3.9153 -1.2852 1.9656 34 1 3.8921 -1.1498 0.1908 35 1 0.3903 -0.1935 2.4553 36 1 1.8707 -0.7268 3.2878 37 1 1.8109 0.8770 2.5187 38 1 1.8480 -2.7679 1.9195 39 1 0.4435 -2.2491 0.9570 40 1 0.4760 -2.2108 -1.3111 41 1 1.9361 -1.2256 -1.4988 42 1 2.8581 -3.5603 -2.4664 43 1 2.0428 -2.3357 -3.4746 44 1 0.8653 -4.3366 -3.9764 45 1 -0.1660 -3.5269 -2.7817 46 1 1.8158 -5.6991 -2.2350 47 1 0.0568 -5.8861 -2.3572 48 1 0.4484 -5.7378 -0.0190 49 1 -0.0539 -4.0845 -0.4608 50 1 2.8344 -4.7405 -0.6999 51 1 2.1755 -4.6259 0.9414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361766224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = 6.075665 kcal Electronic energy + Delta-G solvation = -24696.442725 eV Core-core repulsion = 21630.705165 eV Total energy + Delta-G solvation = -3065.737560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84439 -38.03082 -34.42071 -33.09985 -31.91153 -31.71087 -29.41268 -27.50665 -27.14982 -25.35243 -24.59405 -24.09273 -23.51725 -20.62223 -20.32323 -19.27079 -18.15045 -16.43583 -16.08577 -15.69703 -15.47540 -14.54320 -14.46896 -14.27925 -14.14825 -13.71918 -13.54336 -13.11188 -12.90559 -12.72095 -12.52990 -12.23278 -12.02738 -11.91894 -11.65638 -11.56020 -11.25290 -11.15164 -11.07552 -10.97113 -10.91678 -10.75026 -10.68046 -10.52407 -10.41110 -10.36680 -10.12022 -9.97631 -9.64558 -9.26306 -9.04115 -8.28932 -7.85698 -7.35155 -5.96083 -3.97672 3.33126 3.40721 3.44569 4.12027 4.41448 4.58724 4.69152 4.80362 4.99246 5.12693 5.28063 5.31423 5.39288 5.40226 5.49078 5.57387 5.61226 5.64545 5.67680 5.72212 5.82904 5.85793 5.92305 5.98163 6.02796 6.10587 6.11739 6.14536 6.22169 6.23406 6.24395 6.31216 6.36035 6.40364 6.44204 6.58196 6.60063 6.64452 6.82199 7.03394 7.11080 7.45838 7.57616 7.60917 7.68617 7.87710 7.97677 8.13874 8.49339 9.10103 9.65857 11.15273 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.004550 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.495194 B = 6152.200831 C = 7026.008261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.519 5.519 3 C 0.055 3.945 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.107 3.893 14 C -0.129 4.129 15 C -0.179 4.179 16 C 0.076 3.924 17 N -0.535 5.535 18 C 0.054 3.946 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.148 4.148 23 C 0.058 3.942 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.125 0.875 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -17.301 7.349 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.242 5.242 3 C -0.071 4.071 4 C -0.008 4.008 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.016 3.984 14 C -0.186 4.186 15 C -0.238 4.238 16 C -0.053 4.053 17 N -0.260 5.260 18 C -0.072 4.072 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.149 4.149 22 C -0.187 4.187 23 C -0.070 4.070 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.142 0.858 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.077 -17.373 6.726 18.630 hybrid contribution -1.020 1.150 0.693 1.686 sum -1.097 -16.223 7.419 17.873 Atomic orbital electron populations 1.22523 0.88993 1.00256 1.01230 1.62537 1.06739 1.15491 1.39450 1.22470 0.99207 0.85423 1.00029 1.19077 0.96677 0.93934 0.91088 1.21242 1.34829 0.97877 1.01796 0.92889 1.24970 0.95342 0.98304 0.95622 1.69976 1.41009 1.36252 1.06050 0.86588 0.78730 0.85014 0.77968 1.19810 1.21023 1.21139 1.21079 0.96053 0.92472 0.88776 1.21773 0.93294 1.01118 1.02441 1.22448 1.01162 1.01817 0.98378 1.22129 0.96386 0.94190 0.92569 1.61835 1.59033 1.02694 1.02406 1.22324 0.96986 1.01348 0.86545 1.21500 0.98058 0.97914 0.98478 1.20630 0.99618 0.96726 0.99100 1.20514 1.01445 0.98032 0.94955 1.21926 0.99613 1.00821 0.96363 1.21913 0.96060 0.88567 1.00466 0.90624 0.92690 0.96150 0.96339 0.91401 0.95848 0.96737 0.93154 0.92837 0.93598 0.90484 0.92821 0.92831 0.91971 0.91607 0.95184 0.95683 0.85752 0.91460 0.91190 0.92679 0.92482 0.92304 0.93005 0.92151 0.91930 0.91276 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 7.67 60.07 0.46 0.76 16 2 N -0.52 -8.85 1.57 -227.16 -0.36 -9.21 16 3 C 0.06 1.14 4.07 -3.83 -0.02 1.12 16 4 C 0.03 0.76 4.90 -27.88 -0.14 0.62 16 5 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.11 1.53 0.43 -131.60 -0.06 1.48 16 14 C -0.13 -1.87 7.89 37.16 0.29 -1.57 16 15 C -0.18 -2.41 7.78 37.16 0.29 -2.13 16 16 C 0.08 0.98 3.93 -3.82 -0.02 0.96 16 17 N -0.54 -6.98 3.69 -235.90 -0.87 -7.85 16 18 C 0.05 0.78 3.60 -4.49 -0.02 0.77 16 19 C -0.12 -1.59 5.63 -27.32 -0.15 -1.74 16 20 C -0.12 -1.41 5.30 -29.41 -0.16 -1.56 16 21 C -0.11 -1.13 5.30 -29.41 -0.16 -1.28 16 22 C -0.15 -1.52 5.60 -27.32 -0.15 -1.67 16 23 C 0.06 0.63 5.16 -4.49 -0.02 0.61 16 24 H 0.08 1.41 6.51 -51.93 -0.34 1.07 16 25 H 0.05 0.81 4.71 -51.93 -0.24 0.57 16 26 H 0.02 0.33 6.55 -51.93 -0.34 -0.01 16 27 H 0.02 0.39 6.94 -51.93 -0.36 0.03 16 28 H 0.07 1.40 5.67 -51.92 -0.29 1.11 16 29 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.01 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.05 0.83 6.12 -51.93 -0.32 0.51 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.21 7.48 -51.93 -0.39 0.82 16 35 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.92 6.76 -51.93 -0.35 0.57 16 38 H 0.07 0.77 7.62 -51.93 -0.40 0.38 16 39 H 0.03 0.40 5.82 -51.93 -0.30 0.10 16 40 H 0.02 0.38 4.79 -51.93 -0.25 0.13 16 41 H 0.12 2.20 5.74 -51.93 -0.30 1.90 16 42 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.70 7.51 -51.93 -0.39 0.31 16 46 H 0.06 0.57 7.52 -51.93 -0.39 0.18 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.73 6.89 -51.93 -0.36 0.38 16 50 H 0.07 0.76 6.59 -51.93 -0.34 0.42 16 51 H 0.06 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -28.40 355.13 -9.71 -38.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -9.30 Total: -0.01 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.25 Total: -17.00 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.49 Total: -43.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.40 -9.71 -38.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361766224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.178 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds