Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00194 * 2 1 4 4 C 1.46896 * 111.00191 * 123.96112 * 2 1 3 5 5 C 1.53006 * 109.47469 * 66.04093 * 4 2 1 6 6 C 1.52997 * 109.46996 * 180.02562 * 5 4 2 7 7 C 1.53044 * 109.45778 * 184.99936 * 6 5 4 8 8 C 1.53191 * 109.31440 * 178.62736 * 7 6 5 9 9 N 1.46926 * 108.89109 * 54.56430 * 8 7 6 10 10 C 1.34780 * 120.62730 * 126.46248 * 9 8 7 11 11 O 1.21276 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99585 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47079 * 179.97438 * 13 12 10 15 15 H 1.07989 * 119.99604 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99682 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47209 * 90.00291 * 18 16 14 20 20 H 1.48503 * 109.46758 * 210.00112 * 18 16 14 21 21 H 1.48499 * 109.47251 * 330.00075 * 18 16 14 22 22 C 1.46957 * 118.71783 * 306.64359 * 9 8 7 23 23 C 1.53040 * 109.44905 * 64.94107 * 6 5 4 24 24 H 1.08996 * 109.46583 * 296.04210 * 1 2 3 25 25 H 1.08994 * 109.46965 * 56.04297 * 1 2 3 26 26 H 1.08994 * 109.47307 * 176.04606 * 1 2 3 27 27 H 1.09000 * 109.47091 * 183.95589 * 3 2 1 28 28 H 1.08995 * 109.47352 * 303.95680 * 3 2 1 29 29 H 1.09006 * 109.46754 * 63.95944 * 3 2 1 30 30 H 1.09004 * 109.47167 * 306.04407 * 4 2 1 31 31 H 1.09000 * 109.47672 * 186.04469 * 4 2 1 32 32 H 1.08996 * 109.46812 * 60.00294 * 5 4 2 33 33 H 1.09000 * 109.46975 * 300.00241 * 5 4 2 34 34 H 1.08994 * 109.46508 * 304.97346 * 6 5 4 35 35 H 1.09003 * 109.49852 * 58.68000 * 7 6 5 36 36 H 1.09001 * 109.52587 * 298.59962 * 7 6 5 37 37 H 1.09002 * 109.58786 * 174.42474 * 8 7 6 38 38 H 1.08996 * 109.58870 * 294.70753 * 8 7 6 39 39 H 1.09002 * 109.47438 * 299.99718 * 12 10 9 40 40 H 1.08999 * 109.47522 * 60.00065 * 12 10 9 41 41 H 1.08997 * 109.47578 * 300.00111 * 13 12 10 42 42 H 1.09002 * 109.46912 * 60.00365 * 13 12 10 43 43 H 0.96998 * 120.00357 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.46843 * 293.57352 * 22 9 8 45 45 H 1.08997 * 109.71602 * 173.28846 * 22 9 8 46 46 H 1.08995 * 109.49643 * 301.32582 * 23 6 5 47 47 H 1.08996 * 109.49892 * 61.42777 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 1.6314 -2.2428 0.9702 6 6 2.1793 -3.0405 2.1552 7 6 1.9244 -4.5322 1.9271 8 6 2.5045 -5.3303 3.0989 9 7 1.9458 -4.8077 4.3533 10 6 1.3435 -5.6325 5.2329 11 8 1.2591 -6.8182 4.9926 12 6 0.7748 -5.0811 6.5150 13 6 0.1517 -6.2182 7.3271 14 6 -0.4164 -5.6670 8.6095 15 1 -0.3410 -4.6112 8.8236 16 6 -1.0325 -6.5106 9.5094 17 7 -1.1239 -7.7964 9.2489 18 14 -1.7373 -5.8272 11.0986 19 1 -3.1516 -5.4298 10.8822 20 1 -1.6716 -6.8672 12.1566 21 1 -0.9488 -4.6416 11.5202 22 6 2.0528 -3.3681 4.6283 23 6 1.4778 -2.5919 3.4393 24 1 -0.3632 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0709 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8722 0.9234 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6613 1.1755 32 1 2.0657 -2.6214 0.0449 33 1 0.5472 -2.3476 0.9322 34 1 3.2511 -2.8651 2.2467 35 1 2.4047 -4.8458 1.0002 36 1 0.8515 -4.7123 1.8599 37 1 2.2398 -6.3822 2.9912 38 1 3.5894 -5.2259 3.1107 39 1 1.5712 -4.6142 7.0946 40 1 0.0106 -4.3390 6.2840 41 1 -0.6448 -6.6848 6.7474 42 1 0.9156 -6.9606 7.5581 43 1 -1.5569 -8.3900 9.8821 44 1 3.1007 -3.1016 4.7663 45 1 1.4918 -3.1233 5.5302 46 1 1.6403 -1.5245 3.5887 47 1 0.4091 -2.7899 3.3583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -55.983756 kcal Electronic energy + Delta-G solvation = -22509.158057 eV Core-core repulsion = 19304.896305 eV Total energy + Delta-G solvation = -3204.261753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95130 -38.36955 -37.02988 -33.93236 -33.49809 -31.64656 -30.52345 -29.77510 -27.92933 -26.34974 -25.24249 -23.37599 -23.10738 -21.70626 -20.80639 -20.16935 -18.47979 -17.01899 -16.02309 -15.88376 -15.59971 -15.37804 -15.21753 -15.07544 -14.56733 -14.38681 -13.95169 -13.73721 -13.38550 -13.06124 -12.96939 -12.71073 -12.41011 -12.17239 -12.06894 -12.04469 -11.99391 -11.75529 -11.29163 -11.16670 -11.12986 -10.93067 -10.85767 -10.59264 -10.47899 -10.39195 -9.94083 -9.58264 -9.14961 -8.95123 -8.70392 -8.37383 -8.28901 -5.94861 -3.99266 3.25519 3.33567 3.34453 3.40048 3.42711 3.59892 4.47525 4.49741 4.55365 4.65908 4.82018 4.84450 4.99718 5.01782 5.09667 5.20814 5.25954 5.27082 5.33147 5.34787 5.39936 5.43996 5.49435 5.50822 5.56976 5.63889 5.72833 5.77473 5.82626 5.89550 5.98699 6.02349 6.10258 6.23276 6.24290 6.30793 6.66194 6.68509 6.79678 6.94470 7.75746 7.81089 7.88352 8.08908 8.40101 8.79227 9.09354 9.64097 11.16132 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.002980 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.986939 B = 9392.459964 C =10209.414251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.052 3.948 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.127 4.127 8 C 0.110 3.890 9 N -0.625 5.625 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.109 3.891 23 C -0.132 4.132 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 17.345 -18.708 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.148 4.148 6 C -0.104 4.104 7 C -0.165 4.165 8 C -0.013 4.013 9 N -0.361 5.361 10 C 0.303 3.697 11 O -0.411 6.411 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.015 4.015 23 C -0.170 4.170 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.726 16.287 -19.177 26.320 hybrid contribution -0.679 0.888 1.584 1.938 sum 7.047 17.175 -17.594 25.577 Atomic orbital electron populations 1.22442 0.87374 1.02575 1.00396 1.61994 1.08118 1.13704 1.43541 1.22378 1.00730 0.88907 1.00446 1.22249 1.00049 0.94051 0.91197 1.21635 1.01308 0.93493 0.98366 1.21120 1.00121 0.94811 0.94351 1.21943 1.01972 0.94477 0.98100 1.21462 0.97025 0.99575 0.83205 1.48293 1.59552 1.07961 1.20263 1.21565 0.76351 0.86305 0.85506 1.90650 1.57181 1.16230 1.77048 1.21870 1.00327 1.02438 0.92157 1.18906 0.96126 0.91799 0.93234 1.21218 1.37395 0.94222 1.03638 0.92653 1.25027 0.96200 0.94836 0.98340 1.69996 1.43542 1.03052 1.36237 0.86596 0.79415 0.78656 0.83308 1.20690 1.21216 1.19894 1.21673 1.01048 0.80169 0.98562 1.22049 1.00817 0.99577 0.94573 0.95572 0.91584 0.90941 0.91396 0.91465 0.95680 0.94380 0.90887 0.91104 0.91826 0.91016 0.91009 0.91512 0.89166 0.92263 0.90362 0.90388 0.95878 0.95847 0.92955 0.91901 0.89090 0.90949 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 60.07 0.56 0.71 16 2 N -0.55 -4.42 5.02 -251.27 -1.26 -5.68 16 3 C 0.02 0.16 9.57 60.06 0.57 0.73 16 4 C 0.05 0.40 4.71 -3.82 -0.02 0.38 16 5 C -0.11 -0.88 4.61 -26.73 -0.12 -1.00 16 6 C -0.08 -0.73 2.15 -90.58 -0.19 -0.93 16 7 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 8 C 0.11 1.43 6.43 -3.71 -0.02 1.41 16 9 N -0.62 -9.42 2.98 -172.74 -0.51 -9.94 16 10 C 0.51 10.30 7.70 -10.98 -0.08 10.21 16 11 O -0.54 -13.03 15.39 5.56 0.09 -12.94 16 12 C -0.13 -2.67 3.99 -27.88 -0.11 -2.78 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.11 1.25 6.33 -3.69 -0.02 1.22 16 23 C -0.13 -1.24 5.15 -26.61 -0.14 -1.38 16 24 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 26 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.30 6.51 -51.93 -0.34 -0.04 16 31 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 40 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.07 5.95 -51.93 -0.31 0.76 16 46 H 0.07 0.57 6.50 -51.93 -0.34 0.23 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -33.86 364.27 -9.45 -43.31 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -8.71 Total: -4.29 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.25 Total: -5.76 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -1.04 Total: -42.57 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.86 -9.45 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.675 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds