Wall clock time and date at job start Tue Mar 31 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99711 * 2 1 4 4 C 1.46900 * 111.00008 * 123.95261 * 2 1 3 5 5 H 1.08997 * 108.91895 * 188.00746 * 4 2 1 6 6 C 1.45881 * 108.86688 * 306.67180 * 4 2 1 7 7 C 1.54307 * 112.18887 * 181.76318 * 6 4 2 8 8 C 1.50444 * 108.49351 * 281.45382 * 7 6 4 9 9 N 1.47993 * 112.82064 * 93.73813 * 8 7 6 10 10 C 1.46898 * 111.00266 * 84.83654 * 9 8 7 11 11 C 1.52999 * 109.47625 * 86.89324 * 10 9 8 12 12 C 1.52997 * 109.47798 * 178.69077 * 11 10 9 13 13 C 1.53003 * 109.47120 * 298.69429 * 11 10 9 14 14 C 1.53004 * 109.46979 * 58.68763 * 11 10 9 15 15 C 1.50695 * 109.47182 * 180.02562 * 14 11 10 16 16 H 1.08003 * 120.00249 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99968 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47231 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47017 * 119.99586 * 19 17 15 22 22 H 1.48501 * 109.46929 * 239.99549 * 19 17 15 23 23 C 1.48202 * 114.77256 * 317.97412 * 9 8 7 24 24 C 1.50455 * 112.71162 * 318.39321 * 23 9 8 25 25 H 1.08995 * 109.47138 * 296.04859 * 1 2 3 26 26 H 1.09005 * 109.47106 * 56.05002 * 1 2 3 27 27 H 1.09001 * 109.46634 * 176.04310 * 1 2 3 28 28 H 1.09001 * 109.46749 * 180.38336 * 3 2 1 29 29 H 1.09001 * 109.46984 * 300.38304 * 3 2 1 30 30 H 1.08994 * 109.47627 * 60.38470 * 3 2 1 31 31 H 1.08995 * 108.94172 * 302.46614 * 6 4 2 32 32 H 1.09008 * 108.93433 * 61.16201 * 6 4 2 33 33 H 1.08998 * 109.63204 * 41.15815 * 7 6 4 34 34 H 1.09001 * 109.62501 * 161.75647 * 7 6 4 35 35 H 1.09002 * 108.81153 * 214.59776 * 8 7 6 36 36 H 1.08993 * 108.81549 * 332.87246 * 8 7 6 37 37 H 1.08998 * 109.47712 * 206.89699 * 10 9 8 38 38 H 1.09006 * 109.47425 * 326.89589 * 10 9 8 39 39 H 1.08997 * 109.46761 * 53.69324 * 12 11 10 40 40 H 1.09000 * 109.47245 * 173.69516 * 12 11 10 41 41 H 1.09004 * 109.47062 * 293.69616 * 12 11 10 42 42 H 1.08997 * 109.47024 * 68.26675 * 13 11 10 43 43 H 1.08998 * 109.47552 * 188.27143 * 13 11 10 44 44 H 1.09006 * 109.46885 * 308.27309 * 13 11 10 45 45 H 1.09007 * 109.47075 * 300.00689 * 14 11 10 46 46 H 1.09002 * 109.46827 * 60.00024 * 14 11 10 47 47 H 0.96998 * 120.00077 * 180.02562 * 18 17 15 48 48 H 1.08993 * 109.13263 * 197.38774 * 23 9 8 49 49 H 1.09002 * 108.61505 * 79.04260 * 23 9 8 50 50 H 1.09000 * 109.63214 * 333.69297 * 24 23 9 51 51 H 1.09004 * 109.62892 * 213.29786 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0753 -0.6267 1.1880 6 6 1.3948 -0.2585 2.3664 7 6 1.9296 -0.9836 3.6191 8 6 1.2368 -2.3142 3.7324 9 7 1.9984 -3.4137 3.0990 10 6 3.0016 -3.9597 4.0228 11 6 2.3612 -5.0485 4.8861 12 6 3.4141 -5.6397 5.8256 13 6 1.2242 -4.4422 5.7111 14 6 1.8046 -6.1524 3.9846 15 6 1.1732 -7.2245 4.8348 16 1 1.1697 -7.1285 5.9106 17 6 0.6010 -8.3287 4.2394 18 7 0.6057 -8.4459 2.9295 19 14 -0.1810 -9.6580 5.2933 20 1 -0.0551 -9.2913 6.7267 21 1 -1.6173 -9.7890 4.9397 22 1 0.5083 -10.9509 5.0512 23 6 2.6092 -3.0737 1.7922 24 6 1.6932 -2.2629 0.9163 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0850 1.3424 -0.0069 29 1 1.6403 1.8969 -0.8865 30 1 1.6515 1.8927 0.8933 31 1 1.6130 0.8058 2.4535 32 1 0.3146 -0.3948 2.3145 33 1 3.0044 -1.1373 3.5224 34 1 1.7205 -0.3851 4.5057 35 1 1.0944 -2.5476 4.7876 36 1 0.2593 -2.2434 3.2555 37 1 3.8266 -4.3866 3.4525 38 1 3.3775 -3.1621 4.6638 39 1 3.8899 -4.8371 6.3890 40 1 2.9358 -6.3343 6.5162 41 1 4.1666 -6.1689 5.2410 42 1 0.4083 -4.1537 5.0485 43 1 0.8651 -5.1779 6.4307 44 1 1.5894 -3.5629 6.2420 45 1 1.0545 -5.7311 3.3152 46 1 2.6146 -6.5843 3.3968 47 1 0.2029 -9.2225 2.5106 48 1 2.8712 -3.9938 1.2701 49 1 3.5200 -2.5025 1.9720 50 1 0.6561 -2.4700 1.1801 51 1 1.8636 -2.5203 -0.1291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373017200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:47 Heat of formation + Delta-G solvation = 5.929263 kcal Electronic energy + Delta-G solvation = -24362.346636 eV Core-core repulsion = 21296.602727 eV Total energy + Delta-G solvation = -3065.743908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11455 -37.82277 -35.49630 -32.60869 -32.16756 -31.41678 -27.85804 -27.32303 -26.94389 -26.47851 -25.09119 -23.98451 -22.75013 -22.57663 -19.82220 -19.38968 -17.74603 -16.38529 -16.11205 -15.93077 -15.18378 -14.95258 -14.55483 -14.25133 -14.11682 -13.53425 -13.36916 -13.13988 -12.99774 -12.72209 -12.46676 -12.19372 -12.04748 -11.90306 -11.79107 -11.78798 -11.49888 -11.23353 -11.10938 -10.91566 -10.79979 -10.73289 -10.60338 -10.48765 -10.37925 -10.19903 -10.16367 -9.85824 -9.44239 -8.87791 -8.65636 -8.40785 -8.17405 -7.51713 -5.82284 -3.81277 3.38898 3.46728 3.49792 3.82343 4.26947 4.58891 4.60088 4.76210 5.01545 5.04074 5.09760 5.25937 5.34564 5.36136 5.44559 5.50815 5.53403 5.61509 5.66803 5.68367 5.74685 5.80816 5.87045 5.89086 5.97992 5.98515 6.07965 6.08878 6.13597 6.24653 6.35101 6.36722 6.39102 6.46999 6.50924 6.61471 6.83695 6.86263 6.91836 6.95616 7.16369 7.30744 7.45235 7.68986 7.73723 7.92824 8.14512 8.31117 8.65857 9.26626 9.80199 11.28928 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004036 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.007839 B = 6936.044109 C = 7458.881935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.022 3.978 4 C 0.085 3.915 5 H 0.073 0.927 6 C -0.150 4.150 7 C -0.142 4.142 8 C 0.046 3.954 9 N -0.533 5.533 10 C 0.074 3.926 11 C -0.057 4.057 12 C -0.126 4.126 13 C -0.124 4.124 14 C 0.046 3.954 15 C -0.506 4.506 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.069 3.931 24 C -0.107 4.107 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.005 0.995 47 H 0.256 0.744 48 H 0.075 0.925 49 H 0.023 0.977 50 H 0.075 0.925 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 18.815 -2.607 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.127 4.127 4 C -0.023 4.023 5 H 0.091 0.909 6 C -0.189 4.189 7 C -0.182 4.182 8 C -0.081 4.081 9 N -0.257 5.257 10 C -0.054 4.054 11 C -0.057 4.057 12 C -0.184 4.184 13 C -0.181 4.181 14 C 0.009 3.991 15 C -0.545 4.545 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.710 3.290 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.059 4.059 24 C -0.145 4.145 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.024 0.976 47 H 0.065 0.935 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.093 0.907 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.749 18.138 -3.307 18.641 hybrid contribution -0.139 0.280 1.397 1.432 sum 2.609 18.418 -1.909 18.699 Atomic orbital electron populations 1.22462 0.87682 1.02736 1.00206 1.62351 1.08061 1.13292 1.42833 1.22398 1.00502 0.89422 1.00355 1.20777 0.99169 0.94400 0.87983 0.90864 1.21286 1.01764 0.99714 0.96119 1.21863 1.00850 0.98394 0.97052 1.22254 0.97178 0.87646 1.01030 1.61651 1.28841 1.32386 1.02796 1.22186 0.93022 0.96185 0.93980 1.20608 0.94357 0.95597 0.95164 1.21738 0.98382 0.99144 0.99160 1.21867 0.98827 0.98066 0.99296 1.19014 0.95867 0.90532 0.93720 1.21402 1.35604 1.04361 0.93090 0.92798 1.24981 0.96679 0.98159 0.94687 1.69988 1.45886 1.29189 1.08503 0.86715 0.79122 0.82390 0.80803 1.19981 1.21300 1.21352 1.21731 0.95004 0.99051 0.90091 1.21419 1.01154 0.91777 1.00180 0.95182 0.91851 0.90829 0.91632 0.91598 0.95653 0.92767 0.91279 0.92000 0.91896 0.89555 0.91618 0.92293 0.95858 0.95543 0.92044 0.93625 0.92264 0.92793 0.95858 0.94749 0.97636 0.93473 0.90636 0.95924 0.90678 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.75 60.07 0.53 0.70 16 2 N -0.54 -5.82 4.93 -246.47 -1.21 -7.04 16 3 C 0.02 0.19 9.26 60.07 0.56 0.75 16 4 C 0.08 0.96 1.75 -70.39 -0.12 0.83 16 5 H 0.07 0.86 7.34 -51.93 -0.38 0.47 16 6 C -0.15 -1.63 3.90 -29.42 -0.11 -1.74 16 7 C -0.14 -1.66 5.48 -27.32 -0.15 -1.81 16 8 C 0.05 0.66 4.04 -4.50 -0.02 0.64 16 9 N -0.53 -8.75 3.61 -235.73 -0.85 -9.61 16 10 C 0.07 1.28 4.11 -3.83 -0.02 1.26 16 11 C -0.06 -1.13 0.60 -154.51 -0.09 -1.23 16 12 C -0.13 -2.41 8.10 37.16 0.30 -2.10 16 13 C -0.12 -2.33 6.43 37.16 0.24 -2.10 16 14 C 0.05 1.16 3.86 -27.88 -0.11 1.05 16 15 C -0.51 -14.03 7.81 -34.44 -0.27 -14.30 16 16 H 0.05 1.46 5.73 -52.48 -0.30 1.16 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.88 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.07 1.01 4.78 -4.38 -0.02 0.99 16 24 C -0.11 -1.39 4.38 -27.31 -0.12 -1.51 16 25 H 0.03 0.29 6.21 -51.93 -0.32 -0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.77 7.02 -51.93 -0.36 0.41 16 28 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.22 6.65 -51.93 -0.35 -0.13 16 31 H 0.05 0.55 6.44 -51.93 -0.33 0.22 16 32 H 0.07 0.77 5.53 -51.92 -0.29 0.49 16 33 H 0.06 0.77 6.85 -51.93 -0.36 0.41 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.28 4.33 -51.93 -0.22 1.06 16 36 H 0.07 0.96 6.58 -51.93 -0.34 0.61 16 37 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 38 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.24 6.81 -51.93 -0.35 0.89 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.15 6.43 -51.93 -0.33 0.82 16 43 H 0.05 1.09 6.88 -51.93 -0.36 0.73 16 44 H 0.02 0.37 7.33 -51.93 -0.38 -0.01 16 45 H 0.03 0.95 7.57 -51.93 -0.39 0.56 16 46 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.02 0.31 6.50 -51.93 -0.34 -0.03 16 50 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -29.47 358.87 -9.93 -39.40 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -9.48 Total: -1.53 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 0.49 Total: -17.09 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.33 Total: -43.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.47 -9.93 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373017200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.325 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds