Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99681 * 2 1 4 4 C 1.46895 * 111.00054 * 123.95475 * 2 1 3 5 5 H 1.08999 * 108.82854 * 190.83783 * 4 2 1 6 6 C 1.54163 * 108.77505 * 72.37693 * 4 2 1 7 7 C 1.53826 * 111.96833 * 197.73858 * 6 4 2 8 8 C 1.50815 * 111.62255 * 319.03897 * 7 6 4 9 9 N 1.47640 * 108.05056 * 95.06204 * 8 7 6 10 10 C 1.46892 * 111.00158 * 150.34891 * 9 8 7 11 11 C 1.53000 * 109.47117 * 275.96860 * 10 9 8 12 12 C 1.53007 * 109.47199 * 65.60740 * 11 10 9 13 13 C 1.52997 * 109.47197 * 305.60980 * 11 10 9 14 14 C 1.52998 * 109.47270 * 185.60864 * 11 10 9 15 15 C 1.50706 * 109.47145 * 180.02562 * 14 11 10 16 16 H 1.08003 * 119.99999 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00097 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99829 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47217 * 59.99756 * 19 17 15 21 21 H 1.48497 * 109.47291 * 299.99788 * 19 17 15 22 22 H 1.48498 * 109.47326 * 179.97438 * 19 17 15 23 23 C 1.39777 * 114.75228 * 277.19880 * 9 8 7 24 24 C 1.50758 * 108.85586 * 309.33748 * 4 2 1 25 25 H 1.08998 * 109.47492 * 296.04240 * 1 2 3 26 26 H 1.08999 * 109.47511 * 56.05289 * 1 2 3 27 27 H 1.09009 * 109.46801 * 176.04784 * 1 2 3 28 28 H 1.08999 * 109.46929 * 187.85519 * 3 2 1 29 29 H 1.08996 * 109.46904 * 307.85445 * 3 2 1 30 30 H 1.09003 * 109.47002 * 67.85243 * 3 2 1 31 31 H 1.09004 * 108.98170 * 318.37612 * 6 4 2 32 32 H 1.08992 * 108.98455 * 77.10001 * 6 4 2 33 33 H 1.08993 * 109.04965 * 79.59520 * 7 6 4 34 34 H 1.08999 * 109.04726 * 198.55996 * 7 6 4 35 35 H 1.08993 * 109.74785 * 335.42030 * 8 7 6 36 36 H 1.09000 * 109.74470 * 214.69691 * 8 7 6 37 37 H 1.08998 * 109.47381 * 155.96918 * 10 9 8 38 38 H 1.09004 * 109.47224 * 35.96915 * 10 9 8 39 39 H 1.08998 * 109.47401 * 167.39239 * 12 11 10 40 40 H 1.08997 * 109.47128 * 287.39169 * 12 11 10 41 41 H 1.08999 * 109.46922 * 47.39170 * 12 11 10 42 42 H 1.09000 * 109.46987 * 299.99844 * 13 11 10 43 43 H 1.09007 * 109.47043 * 59.99592 * 13 11 10 44 44 H 1.08998 * 109.47330 * 179.97438 * 13 11 10 45 45 H 1.09000 * 109.47148 * 60.00013 * 14 11 10 46 46 H 1.09005 * 109.47070 * 299.99827 * 14 11 10 47 47 H 0.96992 * 120.00243 * 0.02562 * 18 17 15 48 48 H 1.09004 * 109.01951 * 182.87015 * 23 9 8 49 49 H 1.09000 * 109.02459 * 301.75878 * 23 9 8 50 50 H 1.08999 * 109.54233 * 93.85462 * 24 4 2 51 51 H 1.08997 * 109.54406 * 333.59172 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0675 -0.5857 1.2171 6 6 1.7607 -2.2670 0.8761 7 6 1.8710 -3.0997 2.1649 8 6 3.0147 -2.6345 3.0309 9 7 2.4777 -1.6870 4.0277 10 6 3.2636 -1.7261 5.2681 11 6 2.7654 -2.8715 6.1517 12 6 3.0520 -4.2079 5.4641 13 6 1.2588 -2.7255 6.3745 14 6 3.4871 -2.8265 7.5000 15 6 2.9967 -3.9551 8.3701 16 1 2.2452 -4.6361 7.9987 17 6 3.5067 -4.1178 9.6407 18 7 4.4216 -3.2883 10.0932 19 14 2.8984 -5.5162 10.7194 20 1 3.1771 -6.8133 10.0521 21 1 1.4361 -5.3748 10.9353 22 1 3.5989 -5.4727 12.0280 23 6 2.3313 -0.3749 3.5686 24 6 1.3258 -0.2858 2.4000 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0760 1.3459 -0.1405 29 1 1.5368 1.9366 -0.8114 30 1 1.7639 1.8495 0.9519 31 1 0.7660 -2.4016 0.4512 32 1 2.5016 -2.6223 0.1601 33 1 0.9409 -3.0114 2.7261 34 1 2.0288 -4.1453 1.9004 35 1 3.7637 -2.1363 2.4155 36 1 3.4631 -3.4884 3.5388 37 1 3.1506 -0.7814 5.7999 38 1 4.3150 -1.8839 5.0272 39 1 2.9073 -5.0210 6.1754 40 1 2.3719 -4.3366 4.6221 41 1 4.0810 -4.2183 5.1048 42 1 1.0546 -1.7734 6.8644 43 1 0.7446 -2.7574 5.4139 44 1 0.9037 -3.5417 7.0036 45 1 3.2828 -1.8745 7.9899 46 1 4.5604 -2.9306 7.3413 47 1 4.7372 -2.5619 9.5332 48 1 1.9796 0.2513 4.3886 49 1 3.3001 -0.0065 3.2311 50 1 0.4604 -0.9128 2.6148 51 1 1.0057 0.7483 2.2723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373017201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = 0.641471 kcal Electronic energy + Delta-G solvation = -24289.463701 eV Core-core repulsion = 21223.490497 eV Total energy + Delta-G solvation = -3065.973204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17851 -38.01256 -35.70343 -33.33044 -32.42366 -31.02686 -27.97263 -27.37253 -26.66464 -26.34265 -25.16480 -24.56507 -22.80366 -22.24547 -20.60173 -18.95755 -18.27437 -16.41027 -16.36870 -15.74023 -15.41094 -15.37322 -14.84393 -14.20623 -13.79509 -13.76014 -13.59049 -13.42507 -13.21563 -12.70376 -12.62540 -12.33420 -12.20196 -12.01841 -11.76590 -11.65907 -11.57710 -11.43655 -11.08150 -10.95705 -10.90074 -10.79364 -10.58164 -10.50650 -10.39240 -10.24310 -10.06817 -9.87081 -9.65902 -9.16533 -8.46461 -8.38884 -8.24996 -7.83143 -6.26710 -3.94053 3.47380 3.49168 3.67478 3.74102 4.12840 4.60200 4.64255 4.79121 4.90315 5.02556 5.09962 5.16543 5.19048 5.26684 5.29028 5.43666 5.48053 5.51030 5.56550 5.59100 5.62941 5.67303 5.77171 5.78843 5.87259 5.88206 5.98107 6.02939 6.09385 6.13171 6.24443 6.28345 6.29921 6.45785 6.53550 6.67847 6.76088 6.83482 6.85613 6.88545 7.18599 7.20258 7.27988 7.43992 7.50875 7.64693 7.72765 8.33839 8.56106 8.98286 9.76355 11.13166 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.003469 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.899860 B = 8068.529297 C = 8279.393786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.084 3.916 5 H 0.073 0.927 6 C -0.104 4.104 7 C -0.116 4.116 8 C 0.050 3.950 9 N -0.547 5.547 10 C 0.070 3.930 11 C -0.045 4.045 12 C -0.131 4.131 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.585 4.585 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 1.065 2.935 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.083 3.917 24 C -0.145 4.145 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.267 0.733 48 H 0.067 0.933 49 H 0.010 0.990 50 H 0.078 0.922 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 6.076 -20.047 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.024 4.024 5 H 0.091 0.909 6 C -0.142 4.142 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.271 5.271 10 C -0.057 4.057 11 C -0.046 4.046 12 C -0.188 4.188 13 C -0.169 4.169 14 C -0.018 4.018 15 C -0.624 4.624 16 H 0.071 0.929 17 C -0.192 4.192 18 N -0.555 5.555 19 Si 0.894 3.106 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.048 4.048 24 C -0.185 4.185 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.028 0.972 50 H 0.096 0.904 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.257 5.020 -18.929 20.558 hybrid contribution 0.392 1.592 -0.961 1.900 sum -5.864 6.612 -19.890 21.765 Atomic orbital electron populations 1.22434 0.87793 1.02344 1.00423 1.62255 1.07955 1.13521 1.43115 1.22392 1.00703 0.89242 1.00317 1.21655 0.99044 0.93888 0.87782 0.90893 1.21895 1.01922 0.92800 0.97591 1.21408 1.00348 0.98446 0.95217 1.22201 0.95534 0.96814 0.93083 1.58758 1.54304 1.08173 1.05827 1.22309 0.94116 0.99949 0.89290 1.20420 0.96308 0.92595 0.95255 1.21962 0.98625 0.98697 0.99512 1.21547 0.95172 1.00507 0.99637 1.19255 0.94555 0.96924 0.91039 1.22025 1.25317 1.14061 1.00975 0.92882 1.25774 0.95146 1.01357 0.96902 1.70775 1.28408 1.16372 1.39976 0.83600 0.75734 0.75134 0.76169 1.21566 1.21548 1.20973 1.20871 0.96451 0.90399 0.97041 1.22162 1.00100 1.00954 0.95250 0.95027 0.91878 0.91192 0.91599 0.91644 0.95300 0.91978 0.92153 0.90569 0.91980 0.95020 0.88889 0.92135 0.94959 0.91579 0.93678 0.94661 0.94793 0.93558 0.92825 0.97860 0.98002 0.92250 0.91480 0.97186 0.90366 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.94 60.07 0.54 0.69 16 2 N -0.55 -5.38 4.90 -243.80 -1.20 -6.58 16 3 C 0.02 0.19 9.37 60.07 0.56 0.75 16 4 C 0.08 0.89 1.67 -68.23 -0.11 0.77 16 5 H 0.07 0.85 6.42 -51.93 -0.33 0.51 16 6 C -0.10 -1.08 5.44 -25.69 -0.14 -1.22 16 7 C -0.12 -1.33 5.26 -27.40 -0.14 -1.47 16 8 C 0.05 0.66 4.27 -4.51 -0.02 0.64 16 9 N -0.55 -7.85 2.79 -240.01 -0.67 -8.52 16 10 C 0.07 1.21 4.18 -3.83 -0.02 1.19 16 11 C -0.05 -0.90 0.61 -154.51 -0.09 -1.00 16 12 C -0.13 -2.47 6.82 37.16 0.25 -2.22 16 13 C -0.11 -2.19 7.96 37.16 0.30 -1.89 16 14 C 0.02 0.50 3.35 -27.88 -0.09 0.40 16 15 C -0.59 -16.22 7.47 -34.44 -0.26 -16.47 16 16 H 0.05 1.45 5.76 -52.48 -0.30 1.14 16 17 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 18 N -0.92 -28.31 13.65 55.43 0.76 -27.55 16 19 Si 1.06 25.47 29.90 -169.99 -5.08 20.39 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.08 1.07 4.86 -6.75 -0.03 1.03 16 24 C -0.15 -1.60 3.68 -27.11 -0.10 -1.70 16 25 H 0.03 0.28 6.33 -51.93 -0.33 -0.05 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.60 6.43 -51.92 -0.33 0.27 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.49 8.05 -51.93 -0.42 0.07 16 30 H 0.03 0.25 6.52 -51.93 -0.34 -0.09 16 31 H 0.06 0.62 6.25 -51.93 -0.32 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.97 7.26 -51.93 -0.38 0.59 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.41 6.66 -51.93 -0.35 0.06 16 36 H 0.09 1.33 4.23 -51.93 -0.22 1.11 16 37 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 38 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 39 H 0.07 1.40 6.31 -51.93 -0.33 1.07 16 40 H 0.04 0.75 6.35 -51.93 -0.33 0.42 16 41 H 0.03 0.64 7.25 -51.93 -0.38 0.26 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.82 7.46 -51.92 -0.39 0.43 16 44 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 45 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 46 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 47 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 48 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 49 H 0.01 0.13 7.54 -51.93 -0.39 -0.26 16 50 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 51 H 0.06 0.67 5.38 -51.93 -0.28 0.39 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -29.34 356.65 -9.63 -38.96 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -9.35 Total: -1.81 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 0.54 Total: -20.26 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -1.11 Total: -42.65 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.34 -9.63 -38.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373017201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.605 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds