Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99681 * 2 1 4 4 C 1.46895 * 111.00054 * 123.95475 * 2 1 3 5 5 H 1.08999 * 108.82854 * 190.83783 * 4 2 1 6 6 C 1.54163 * 108.77505 * 72.37693 * 4 2 1 7 7 C 1.53826 * 111.96833 * 197.73858 * 6 4 2 8 8 C 1.50815 * 111.62255 * 319.03897 * 7 6 4 9 9 N 1.47640 * 108.05056 * 95.06204 * 8 7 6 10 10 C 1.46892 * 111.00158 * 150.34891 * 9 8 7 11 11 C 1.53000 * 109.47117 * 275.96860 * 10 9 8 12 12 C 1.53007 * 109.47199 * 65.60740 * 11 10 9 13 13 C 1.52997 * 109.47197 * 305.60980 * 11 10 9 14 14 C 1.52998 * 109.47270 * 185.60864 * 11 10 9 15 15 C 1.50706 * 109.47145 * 180.02562 * 14 11 10 16 16 H 1.08003 * 119.99999 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00097 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99829 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47217 * 59.99756 * 19 17 15 21 21 H 1.48497 * 109.47291 * 299.99788 * 19 17 15 22 22 H 1.48498 * 109.47326 * 179.97438 * 19 17 15 23 23 C 1.39777 * 114.75228 * 277.19880 * 9 8 7 24 24 C 1.50758 * 108.85586 * 309.33748 * 4 2 1 25 25 H 1.08998 * 109.47492 * 296.04240 * 1 2 3 26 26 H 1.08999 * 109.47511 * 56.05289 * 1 2 3 27 27 H 1.09009 * 109.46801 * 176.04784 * 1 2 3 28 28 H 1.08999 * 109.46929 * 187.85519 * 3 2 1 29 29 H 1.08996 * 109.46904 * 307.85445 * 3 2 1 30 30 H 1.09003 * 109.47002 * 67.85243 * 3 2 1 31 31 H 1.09004 * 108.98170 * 318.37612 * 6 4 2 32 32 H 1.08992 * 108.98455 * 77.10001 * 6 4 2 33 33 H 1.08993 * 109.04965 * 79.59520 * 7 6 4 34 34 H 1.08999 * 109.04726 * 198.55996 * 7 6 4 35 35 H 1.08993 * 109.74785 * 335.42030 * 8 7 6 36 36 H 1.09000 * 109.74470 * 214.69691 * 8 7 6 37 37 H 1.08998 * 109.47381 * 155.96918 * 10 9 8 38 38 H 1.09004 * 109.47224 * 35.96915 * 10 9 8 39 39 H 1.08998 * 109.47401 * 167.39239 * 12 11 10 40 40 H 1.08997 * 109.47128 * 287.39169 * 12 11 10 41 41 H 1.08999 * 109.46922 * 47.39170 * 12 11 10 42 42 H 1.09000 * 109.46987 * 299.99844 * 13 11 10 43 43 H 1.09007 * 109.47043 * 59.99592 * 13 11 10 44 44 H 1.08998 * 109.47330 * 179.97438 * 13 11 10 45 45 H 1.09000 * 109.47148 * 60.00013 * 14 11 10 46 46 H 1.09005 * 109.47070 * 299.99827 * 14 11 10 47 47 H 0.96992 * 120.00243 * 0.02562 * 18 17 15 48 48 H 1.09004 * 109.01951 * 182.87015 * 23 9 8 49 49 H 1.09000 * 109.02459 * 301.75878 * 23 9 8 50 50 H 1.08999 * 109.54233 * 93.85462 * 24 4 2 51 51 H 1.08997 * 109.54406 * 333.59172 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0675 -0.5857 1.2171 6 6 1.7607 -2.2670 0.8761 7 6 1.8710 -3.0997 2.1649 8 6 3.0147 -2.6345 3.0309 9 7 2.4777 -1.6870 4.0277 10 6 3.2636 -1.7261 5.2681 11 6 2.7654 -2.8715 6.1517 12 6 3.0520 -4.2079 5.4641 13 6 1.2588 -2.7255 6.3745 14 6 3.4871 -2.8265 7.5000 15 6 2.9967 -3.9551 8.3701 16 1 2.2452 -4.6361 7.9987 17 6 3.5067 -4.1178 9.6407 18 7 4.4216 -3.2883 10.0932 19 14 2.8984 -5.5162 10.7194 20 1 3.1771 -6.8133 10.0521 21 1 1.4361 -5.3748 10.9353 22 1 3.5989 -5.4727 12.0280 23 6 2.3313 -0.3749 3.5686 24 6 1.3258 -0.2858 2.4000 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0760 1.3459 -0.1405 29 1 1.5368 1.9366 -0.8114 30 1 1.7639 1.8495 0.9519 31 1 0.7660 -2.4016 0.4512 32 1 2.5016 -2.6223 0.1601 33 1 0.9409 -3.0114 2.7261 34 1 2.0288 -4.1453 1.9004 35 1 3.7637 -2.1363 2.4155 36 1 3.4631 -3.4884 3.5388 37 1 3.1506 -0.7814 5.7999 38 1 4.3150 -1.8839 5.0272 39 1 2.9073 -5.0210 6.1754 40 1 2.3719 -4.3366 4.6221 41 1 4.0810 -4.2183 5.1048 42 1 1.0546 -1.7734 6.8644 43 1 0.7446 -2.7574 5.4139 44 1 0.9037 -3.5417 7.0036 45 1 3.2828 -1.8745 7.9899 46 1 4.5604 -2.9306 7.3413 47 1 4.7372 -2.5619 9.5332 48 1 1.9796 0.2513 4.3886 49 1 3.3001 -0.0065 3.2311 50 1 0.4604 -0.9128 2.6148 51 1 1.0057 0.7483 2.2723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373017201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -16.227685 kcal Electronic energy + Delta-G solvation = -24290.195203 eV Core-core repulsion = 21223.490497 eV Total energy + Delta-G solvation = -3066.704706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22054 -39.19740 -37.11466 -34.74866 -34.02707 -32.09762 -28.88972 -28.55067 -28.34517 -27.92300 -26.26424 -25.84005 -24.58017 -23.22812 -21.66589 -20.00630 -19.80891 -18.43940 -17.35893 -16.69640 -16.62207 -16.42547 -15.81253 -15.59719 -15.52139 -15.06060 -14.81613 -14.63560 -14.41167 -14.08441 -13.76414 -13.61459 -13.34150 -13.19536 -12.95910 -12.80930 -12.79124 -12.57328 -12.50329 -12.50134 -12.29165 -12.09935 -11.96292 -11.94923 -11.74859 -11.57998 -11.39311 -11.25799 -11.13939 -10.93252 -10.47337 -10.40007 -9.20986 -9.05722 -8.58595 -6.26279 1.53451 1.61920 1.80042 2.60416 2.96121 3.00335 3.24181 3.75471 3.83791 4.02132 4.05761 4.14985 4.19406 4.26289 4.31816 4.36501 4.41348 4.50647 4.52613 4.57210 4.65850 4.69650 4.71275 4.76631 4.80139 4.85513 4.91927 4.95341 4.98525 5.00802 5.05661 5.09927 5.10973 5.17171 5.21290 5.28317 5.34936 5.39578 5.40954 5.52114 5.57404 5.66824 5.75954 6.10682 6.13274 6.14224 6.23700 6.30333 6.57246 6.69555 7.53372 8.81428 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.003469 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.899860 B = 8068.529297 C = 8279.393786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.553 5.553 3 C 0.021 3.979 4 C 0.088 3.912 5 H 0.062 0.938 6 C -0.098 4.098 7 C -0.109 4.109 8 C 0.050 3.950 9 N -0.544 5.544 10 C 0.081 3.919 11 C -0.042 4.042 12 C -0.121 4.121 13 C -0.100 4.100 14 C 0.024 3.976 15 C -0.587 4.587 16 H 0.058 0.942 17 C -0.046 4.046 18 N -0.947 5.947 19 Si 1.112 2.888 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.289 1.289 23 C 0.081 3.919 24 C -0.132 4.132 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.034 0.966 45 H -0.023 1.023 46 H -0.022 1.022 47 H 0.252 0.748 48 H 0.060 0.940 49 H 0.010 0.990 50 H 0.073 0.927 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 5.461 -22.025 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.276 5.276 3 C -0.127 4.127 4 C -0.020 4.020 5 H 0.080 0.920 6 C -0.136 4.136 7 C -0.148 4.148 8 C -0.076 4.076 9 N -0.268 5.268 10 C -0.047 4.047 11 C -0.043 4.043 12 C -0.178 4.178 13 C -0.157 4.157 14 C -0.013 4.013 15 C -0.625 4.625 16 H 0.076 0.924 17 C -0.242 4.242 18 N -0.586 5.586 19 Si 0.934 3.066 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.214 1.214 23 C -0.049 4.049 24 C -0.171 4.171 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.053 0.947 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.028 0.972 50 H 0.092 0.908 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.738 4.415 -20.946 22.762 hybrid contribution 0.864 1.847 -0.406 2.079 sum -6.874 6.262 -21.352 23.288 Atomic orbital electron populations 1.22469 0.86974 1.02668 1.00860 1.62272 1.08738 1.14112 1.42500 1.22429 1.00768 0.88775 1.00723 1.21563 0.98353 0.94255 0.87833 0.91958 1.21834 1.02434 0.92363 0.96976 1.21339 0.98928 0.99304 0.95196 1.22232 0.96429 0.96071 0.92860 1.58743 1.53507 1.09315 1.05200 1.22029 0.94106 0.98197 0.90355 1.20321 0.96101 0.94692 0.93208 1.21863 0.99654 0.96685 0.99569 1.21435 0.94754 0.99178 1.00379 1.19181 0.93614 0.94868 0.93670 1.22392 1.24683 1.14279 1.01191 0.92367 1.27303 0.94754 1.03087 0.99061 1.70915 1.30368 1.17212 1.40130 0.82995 0.76170 0.73050 0.74374 1.19408 1.19541 1.21434 1.20909 0.97048 0.89344 0.97590 1.22039 0.99143 1.01371 0.94518 0.95200 0.90732 0.91052 0.91726 0.90375 0.95487 0.91244 0.91901 0.91367 0.90808 0.94570 0.89887 0.92964 0.95475 0.94059 0.90892 0.94292 0.95676 0.91113 0.94699 1.00450 1.00384 0.93861 0.92176 0.97244 0.90803 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.94 127.69 1.14 1.41 16 2 N -0.55 -9.60 4.90 -925.26 -4.54 -14.14 16 3 C 0.02 0.32 9.37 127.69 1.20 1.52 16 4 C 0.09 1.67 1.67 44.58 0.07 1.74 16 5 H 0.06 1.33 6.42 -2.39 -0.02 1.32 16 6 C -0.10 -1.78 5.44 31.27 0.17 -1.61 16 7 C -0.11 -2.21 5.26 30.16 0.16 -2.05 16 8 C 0.05 1.22 4.27 85.45 0.36 1.59 16 9 N -0.54 -14.90 2.79 -913.24 -2.55 -17.45 16 10 C 0.08 2.77 4.18 86.30 0.36 3.13 16 11 C -0.04 -1.70 0.61 -52.18 -0.03 -1.74 16 12 C -0.12 -4.46 6.82 71.98 0.49 -3.96 16 13 C -0.10 -3.87 7.96 71.98 0.57 -3.30 16 14 C 0.02 1.26 3.35 29.85 0.10 1.36 16 15 C -0.59 -33.03 7.47 25.60 0.19 -32.84 16 16 H 0.06 3.17 5.76 -2.91 -0.02 3.15 16 17 C -0.05 -2.69 5.46 84.65 0.46 -2.23 16 18 N -0.95 -60.03 13.65 21.45 0.29 -59.74 16 19 Si 1.11 51.07 29.90 68.60 2.05 53.12 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 C 0.08 1.99 4.86 88.07 0.43 2.42 16 24 C -0.13 -2.63 3.68 30.35 0.11 -2.52 16 25 H 0.03 0.45 6.33 -2.39 -0.02 0.43 16 26 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.07 1.03 6.43 -2.38 -0.02 1.01 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 30 H 0.03 0.42 6.52 -2.39 -0.02 0.40 16 31 H 0.07 1.18 6.25 -2.38 -0.01 1.17 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.53 7.26 -2.39 -0.02 1.51 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 0.86 6.66 -2.39 -0.02 0.85 16 36 H 0.08 2.20 4.23 -2.39 -0.01 2.19 16 37 H 0.05 1.87 7.44 -2.39 -0.02 1.85 16 38 H 0.03 0.95 7.81 -2.39 -0.02 0.93 16 39 H 0.04 1.71 6.31 -2.39 -0.02 1.70 16 40 H 0.07 2.27 6.35 -2.39 -0.02 2.25 16 41 H 0.04 1.38 7.25 -2.39 -0.02 1.37 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 2.37 7.46 -2.38 -0.02 2.35 16 44 H 0.03 1.45 6.62 -2.39 -0.02 1.44 16 45 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 46 H -0.02 -1.25 8.01 -2.38 -0.02 -1.27 16 47 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 48 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 49 H 0.01 0.24 7.54 -2.39 -0.02 0.22 16 50 H 0.07 1.58 7.11 -2.39 -0.02 1.56 16 51 H 0.07 1.35 5.38 -2.39 -0.01 1.33 16 Total: -1.00 -63.69 356.65 2.03 -61.66 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.62 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 5.79 Total: -37.08 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -6.79 Total: -91.33 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -63.69 2.03 -61.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373017201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.433 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds