Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46902 * 110.99769 * 2 1 4 4 C 1.46899 * 110.99413 * 123.94946 * 2 1 3 5 5 H 1.08997 * 109.49818 * 55.03945 * 4 2 1 6 6 C 1.53033 * 109.48724 * 295.00019 * 4 2 1 7 7 C 1.52986 * 109.33780 * 179.72157 * 6 4 2 8 8 C 1.52795 * 109.65859 * 59.91371 * 7 6 4 9 9 H 1.08997 * 109.38195 * 180.47001 * 8 7 6 10 10 C 1.53065 * 109.86048 * 300.53565 * 8 7 6 11 11 H 1.08991 * 109.64860 * 298.17921 * 10 8 7 12 12 C 1.51638 * 109.66076 * 174.74343 * 4 2 1 13 13 O 1.43213 * 108.87611 * 178.21927 * 10 8 7 14 14 C 1.43037 * 113.50554 * 300.71804 * 13 10 8 15 15 C 1.53079 * 109.37599 * 58.84342 * 14 13 10 16 16 N 1.46929 * 109.82684 * 60.75271 * 8 7 6 17 17 C 1.46897 * 110.99926 * 56.78462 * 16 8 7 18 18 C 1.53004 * 109.47108 * 169.99787 * 17 16 8 19 19 C 1.50702 * 109.46968 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00059 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99882 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99701 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99808 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47555 * 59.99941 * 23 21 19 25 25 H 1.48504 * 109.46964 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47171 * 299.99760 * 23 21 19 27 27 H 1.08993 * 109.47195 * 296.04781 * 1 2 3 28 28 H 1.09004 * 109.46600 * 56.05210 * 1 2 3 29 29 H 1.08997 * 109.46600 * 176.04870 * 1 2 3 30 30 H 1.09005 * 109.46696 * 183.95282 * 3 2 1 31 31 H 1.08997 * 109.46588 * 303.94863 * 3 2 1 32 32 H 1.08999 * 109.47428 * 63.95141 * 3 2 1 33 33 H 1.09000 * 109.49261 * 59.76037 * 6 4 2 34 34 H 1.09008 * 109.49035 * 299.68261 * 6 4 2 35 35 H 1.09000 * 109.43643 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.44214 * 299.85481 * 7 6 4 37 37 H 1.09004 * 108.55148 * 59.99455 * 12 4 2 38 38 H 1.08999 * 109.61233 * 300.49728 * 12 4 2 39 39 H 1.09000 * 109.48697 * 178.81642 * 14 13 10 40 40 H 1.09006 * 109.48530 * 298.85153 * 14 13 10 41 41 H 1.08999 * 109.48840 * 63.41241 * 15 14 13 42 42 H 1.08993 * 109.49271 * 183.46466 * 15 14 13 43 43 H 1.08994 * 109.47132 * 290.00067 * 17 16 8 44 44 H 1.09001 * 109.47143 * 50.00034 * 17 16 8 45 45 H 1.08999 * 109.47161 * 299.99709 * 18 17 16 46 46 H 1.09001 * 109.46916 * 60.00108 * 18 17 16 47 47 H 0.96999 * 119.99351 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5761 -1.7719 1.1242 6 6 1.6091 -0.0695 2.4444 7 6 2.1528 -0.8735 3.6270 8 6 3.6748 -0.9667 3.5288 9 1 4.0565 -1.5472 4.3686 10 6 4.0704 -1.6499 2.2175 11 1 3.6744 -2.6652 2.1992 12 6 3.5058 -0.8559 1.0371 13 8 5.4992 -1.6887 2.1280 14 6 6.1083 -0.3949 2.1623 15 6 5.7254 0.3123 3.4648 16 7 4.2602 0.3803 3.5697 17 6 3.8521 1.0950 4.7865 18 6 4.6684 2.3822 4.9199 19 6 4.2502 3.1150 6.1686 20 1 3.4791 2.7040 6.8033 21 6 4.8514 4.3107 6.5002 22 7 5.7900 4.8114 5.7270 23 14 4.3335 5.2186 8.0483 24 1 4.5744 4.3555 9.2325 25 1 5.1248 6.4687 8.1771 26 1 2.8892 5.5540 7.9658 27 1 -0.3633 0.4512 0.9232 28 1 -0.3633 0.5739 -0.8526 29 1 -0.3632 -1.0252 -0.0708 30 1 3.0829 1.3432 -0.0708 31 1 1.5899 1.9162 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 0.5232 -0.0066 2.5159 34 1 2.0338 0.9343 2.4610 35 1 1.8789 -0.3786 4.5587 36 1 1.7262 -1.8764 3.6106 37 1 3.9150 0.1543 1.0502 38 1 3.7817 -1.3472 0.1041 39 1 7.1919 -0.5017 2.1114 40 1 5.7606 0.1932 1.3129 41 1 6.1252 -0.2446 4.3121 42 1 6.1376 1.3213 3.4655 43 1 2.7922 1.3416 4.7249 44 1 4.0278 0.4616 5.6560 45 1 5.7283 2.1355 4.9816 46 1 4.4927 3.0156 4.0504 47 1 6.2132 5.6524 5.9605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374427712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -36.340669 kcal Electronic energy + Delta-G solvation = -24465.631207 eV Core-core repulsion = 21262.221242 eV Total energy + Delta-G solvation = -3203.409965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61445 -38.02074 -36.06810 -34.31294 -32.84235 -30.15978 -29.89948 -29.57580 -27.55141 -26.70348 -24.41238 -24.00116 -23.22851 -21.56836 -20.55580 -19.94996 -18.20754 -16.72354 -16.45502 -15.85975 -15.51163 -15.28279 -14.85335 -14.69953 -14.53627 -14.23455 -13.89340 -13.49964 -13.39792 -13.20873 -12.64796 -12.31070 -12.19383 -12.00669 -11.87703 -11.76749 -11.68895 -11.40027 -11.04498 -11.03412 -10.92240 -10.82607 -10.68324 -10.56180 -10.18966 -9.98248 -9.87422 -9.45504 -9.16186 -9.12173 -8.38749 -8.20892 -7.74142 -6.04987 -4.07363 3.29773 3.34512 3.36650 3.89082 4.06181 4.28551 4.46352 4.79199 4.90154 5.01394 5.19638 5.22273 5.27757 5.31247 5.36702 5.40777 5.43920 5.51152 5.55207 5.60404 5.60730 5.70419 5.74211 5.81335 5.89555 5.91036 6.06902 6.09117 6.16430 6.22703 6.28240 6.34494 6.41104 6.41383 6.46115 6.59412 6.88534 7.06710 7.09256 7.33823 7.42310 7.53261 7.70927 7.79374 7.98661 8.37644 8.98761 9.56614 11.06304 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.004960 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.656634 B = 5644.203763 C = 6355.721533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.017 3.983 4 C 0.093 3.907 5 H 0.074 0.926 6 C -0.147 4.147 7 C -0.105 4.105 8 C 0.053 3.947 9 H 0.042 0.958 10 C 0.103 3.897 11 H 0.097 0.903 12 C -0.135 4.135 13 O -0.383 6.383 14 C 0.059 3.941 15 C 0.017 3.983 16 N -0.525 5.525 17 C 0.062 3.938 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.053 0.947 21 C 0.060 3.940 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -11.724 -10.305 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.131 4.131 4 C -0.015 4.015 5 H 0.092 0.908 6 C -0.186 4.186 7 C -0.143 4.143 8 C -0.056 4.056 9 H 0.059 0.941 10 C 0.045 3.955 11 H 0.115 0.885 12 C -0.172 4.172 13 O -0.301 6.301 14 C -0.017 4.017 15 C -0.111 4.111 16 N -0.251 5.251 17 C -0.064 4.064 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.463 -11.703 -11.197 17.439 hybrid contribution -0.383 0.832 2.491 2.654 sum -6.846 -10.870 -8.706 15.519 Atomic orbital electron populations 1.22383 0.87960 1.01796 1.00534 1.62287 1.07455 1.14372 1.42183 1.22460 1.01285 0.88699 1.00619 1.21302 0.95136 0.96950 0.88125 0.90826 1.22137 0.99692 1.01915 0.94854 1.21405 0.93844 0.99894 0.99198 1.22169 0.95339 0.91119 0.96993 0.94059 1.22165 0.81070 0.98903 0.93383 0.88508 1.21823 0.94708 1.02766 0.97945 1.88045 1.18997 1.28677 1.94419 1.22738 0.97512 0.84167 0.97322 1.22838 0.89301 1.02345 0.96663 1.62351 1.07790 1.14458 1.40501 1.22349 1.00453 0.96397 0.87204 1.19209 0.94784 0.90333 0.97077 1.21123 1.20968 1.05865 1.08169 0.92912 1.24975 0.95025 0.97338 0.96833 1.69949 1.25543 1.19990 1.37752 0.86661 0.78639 0.79109 0.83607 1.20290 1.21228 1.20249 0.95184 0.91736 0.91768 0.90908 0.92049 0.94485 0.92629 0.89544 0.91168 0.92084 0.89609 0.91373 0.88999 0.92275 0.94646 0.88059 0.91758 0.96313 0.96273 0.95824 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.31 60.07 0.56 0.78 16 2 N -0.54 -6.40 5.00 -243.99 -1.22 -7.62 16 3 C 0.02 0.21 8.81 60.07 0.53 0.74 16 4 C 0.09 1.12 2.19 -68.39 -0.15 0.97 16 5 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 6 C -0.15 -1.90 4.37 -26.72 -0.12 -2.02 16 7 C -0.10 -1.39 5.00 -26.84 -0.13 -1.52 16 8 C 0.05 0.79 2.07 -67.77 -0.14 0.65 16 9 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 10 C 0.10 1.40 3.28 -26.67 -0.09 1.32 16 11 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.13 -1.74 3.91 -27.39 -0.11 -1.84 16 13 O -0.38 -5.81 10.67 -35.23 -0.38 -6.19 16 14 C 0.06 0.87 6.59 37.20 0.25 1.11 16 15 C 0.02 0.29 4.93 -3.70 -0.02 0.27 16 16 N -0.53 -9.12 3.35 -226.54 -0.76 -9.87 16 17 C 0.06 1.28 4.40 -3.82 -0.02 1.26 16 18 C 0.02 0.58 4.25 -27.88 -0.12 0.46 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 23 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.03 0.31 6.43 -51.93 -0.33 -0.03 16 28 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.04 0.49 6.29 -51.93 -0.33 0.16 16 33 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 34 H 0.09 1.34 5.92 -51.92 -0.31 1.04 16 35 H 0.07 1.01 6.58 -51.93 -0.34 0.67 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.25 4.24 -51.93 -0.22 1.03 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.93 6.08 -51.93 -0.32 1.61 16 43 H 0.06 1.31 6.87 -51.93 -0.36 0.96 16 44 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.02 0.50 6.28 -51.93 -0.33 0.18 16 46 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -29.05 338.43 -9.64 -38.70 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.14 Total: 0.17 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 0.03 Total: -11.09 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -1.24 Total: -43.13 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.38 Total: -6.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.05 -9.64 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374427712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.355 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds