Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99917 * 2 1 4 4 C 1.46904 * 110.99919 * 123.94618 * 2 1 3 5 5 H 1.09008 * 109.48930 * 55.06170 * 4 2 1 6 6 C 1.53015 * 109.49574 * 295.00739 * 4 2 1 7 7 C 1.52956 * 109.40030 * 179.71279 * 6 4 2 8 8 C 1.53048 * 109.61026 * 60.26313 * 7 6 4 9 9 H 1.09006 * 110.15317 * 61.09470 * 8 7 6 10 10 C 1.53062 * 109.50281 * 300.44857 * 8 7 6 11 11 H 1.08999 * 109.37790 * 178.86791 * 10 8 7 12 12 C 1.52792 * 109.86491 * 59.15463 * 10 8 7 13 13 O 1.42928 * 109.26741 * 298.57452 * 10 8 7 14 14 C 1.43045 * 113.61806 * 300.99240 * 13 10 8 15 15 C 1.53076 * 109.35723 * 58.33203 * 14 13 10 16 16 N 1.47033 * 109.36884 * 303.45773 * 15 14 13 17 17 C 1.46899 * 110.99997 * 182.37158 * 16 15 14 18 18 C 1.52997 * 109.47356 * 66.04541 * 17 16 15 19 19 C 1.50703 * 109.47455 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99860 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99912 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46959 * 60.00314 * 23 21 19 25 25 H 1.48493 * 109.47094 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46951 * 300.00241 * 23 21 19 27 27 H 1.08995 * 109.47213 * 296.04706 * 1 2 3 28 28 H 1.09004 * 109.46631 * 56.05124 * 1 2 3 29 29 H 1.09000 * 109.46949 * 176.04606 * 1 2 3 30 30 H 1.09000 * 109.47137 * 183.95382 * 3 2 1 31 31 H 1.09002 * 109.46781 * 303.95208 * 3 2 1 32 32 H 1.08998 * 109.47236 * 63.95133 * 3 2 1 33 33 H 1.08998 * 109.48899 * 59.72992 * 6 4 2 34 34 H 1.09009 * 109.48393 * 299.68339 * 6 4 2 35 35 H 1.09007 * 109.44679 * 300.22516 * 7 6 4 36 36 H 1.09001 * 109.45090 * 180.31324 * 7 6 4 37 37 H 1.08993 * 109.44426 * 60.61386 * 12 10 8 38 38 H 1.09003 * 109.43776 * 180.49320 * 12 10 8 39 39 H 1.09001 * 109.49176 * 298.36538 * 14 13 10 40 40 H 1.09000 * 109.51202 * 178.30422 * 14 13 10 41 41 H 1.08994 * 109.49119 * 63.42782 * 15 14 13 42 42 H 1.09002 * 109.49186 * 183.49551 * 15 14 13 43 43 H 1.08993 * 109.47521 * 186.05151 * 17 16 15 44 44 H 1.09004 * 109.46983 * 306.04708 * 17 16 15 45 45 H 1.09002 * 109.47328 * 300.00555 * 18 17 16 46 46 H 1.09004 * 109.46938 * 60.00140 * 18 17 16 47 47 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7658 1.1377 5 1 1.5764 -1.7721 1.1239 6 6 1.6092 -0.0697 2.4444 7 6 2.1522 -0.8726 3.6277 8 6 3.6774 -0.9579 3.5339 9 1 4.1125 0.0409 3.5726 10 6 4.0714 -1.6400 2.2215 11 1 5.1580 -1.6816 2.1475 12 6 3.5200 -0.8465 1.0380 13 8 3.5436 -2.9682 2.2034 14 6 4.0024 -3.7820 3.2866 15 6 3.6234 -3.1206 4.6141 16 7 4.1826 -1.7615 4.6590 17 6 3.8873 -1.1130 5.9435 18 6 4.6233 -1.8466 7.0664 19 6 4.3210 -1.1809 8.3842 20 1 3.6687 -0.3208 8.4175 21 6 4.8762 -1.6705 9.5473 22 7 5.6701 -2.7182 9.5068 23 14 4.5008 -0.8457 11.1808 24 1 3.0383 -0.8922 11.4342 25 1 5.2153 -1.5578 12.2706 26 1 4.9509 0.5687 11.1361 27 1 -0.3633 0.4512 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 0.5234 -0.0065 2.5156 34 1 2.0338 0.9342 2.4609 35 1 1.7307 -1.8777 3.6082 36 1 1.8727 -0.3804 4.5592 37 1 3.9380 0.1601 1.0497 38 1 3.7969 -1.3428 0.1079 39 1 5.0858 -3.8872 3.2290 40 1 3.5377 -4.7660 3.2249 41 1 2.5379 -3.0702 4.6983 42 1 4.0257 -3.7067 5.4404 43 1 4.2172 -0.0747 5.9107 44 1 2.8138 -1.1474 6.1297 45 1 4.2934 -2.8850 7.0993 46 1 5.6968 -1.8122 6.8803 47 1 6.0604 -3.0629 10.3252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374427713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = -39.014982 kcal Electronic energy + Delta-G solvation = -23940.944717 eV Core-core repulsion = 20737.418785 eV Total energy + Delta-G solvation = -3203.525932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62025 -38.20421 -35.93885 -34.25928 -32.95390 -30.67429 -29.78785 -29.40471 -27.74963 -26.69212 -24.51973 -23.72851 -22.83795 -22.58488 -20.60794 -19.64273 -18.60913 -16.66889 -16.28380 -16.12891 -15.77753 -15.34260 -14.97403 -14.58132 -14.50380 -14.36233 -13.87636 -13.65896 -13.48012 -13.19248 -12.68736 -12.51145 -12.17672 -12.09717 -11.98209 -11.94057 -11.77896 -11.44102 -11.14952 -11.13741 -10.92573 -10.86631 -10.80446 -10.58030 -10.37713 -10.09815 -9.78849 -9.57531 -9.18554 -9.08863 -8.38843 -8.34948 -7.72870 -6.01992 -4.04601 3.31404 3.36018 3.38112 3.78593 3.90544 4.28261 4.48499 4.70153 4.73344 4.95769 5.01699 5.10688 5.14794 5.25111 5.28962 5.33448 5.34067 5.36327 5.44496 5.50175 5.54960 5.57711 5.64988 5.70026 5.74236 5.76618 5.91584 5.97652 6.00929 6.10162 6.15171 6.17976 6.23355 6.37447 6.42639 6.51097 6.90384 6.92233 6.92814 7.35837 7.42256 7.50327 7.74630 7.85543 8.04415 8.40476 9.02198 9.59122 11.09320 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.003827 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.148787 B = 7313.724366 C = 7930.405746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.015 3.985 4 C 0.088 3.912 5 H 0.091 0.909 6 C -0.146 4.146 7 C -0.143 4.143 8 C 0.054 3.946 9 H 0.085 0.915 10 C 0.102 3.898 11 H 0.065 0.935 12 C -0.100 4.100 13 O -0.381 6.381 14 C 0.065 3.935 15 C 0.014 3.986 16 N -0.529 5.529 17 C 0.063 3.937 18 C 0.029 3.971 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.023 0.977 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 3.776 -18.748 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.133 4.133 4 C -0.020 4.020 5 H 0.109 0.891 6 C -0.185 4.185 7 C -0.182 4.182 8 C -0.056 4.056 9 H 0.103 0.897 10 C 0.043 3.957 11 H 0.083 0.917 12 C -0.138 4.138 13 O -0.300 6.300 14 C -0.012 4.012 15 C -0.114 4.114 16 N -0.253 5.253 17 C -0.064 4.064 18 C -0.008 4.008 19 C -0.562 4.562 20 H 0.071 0.929 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.754 3.323 -19.259 20.677 hybrid contribution -1.200 1.018 2.196 2.702 sum -7.954 4.341 -17.063 19.320 Atomic orbital electron populations 1.22388 0.87714 1.02205 1.00352 1.62288 1.07719 1.13764 1.42617 1.22482 1.01122 0.89299 1.00419 1.21699 0.95274 0.97851 0.87163 0.89138 1.22131 1.00551 0.99814 0.96026 1.22049 0.97233 1.01022 0.97937 1.22402 0.93064 0.97980 0.92109 0.89660 1.21985 0.97396 0.82772 0.93501 0.91684 1.21553 0.94682 0.99738 0.97872 1.87903 1.71207 1.22764 1.48147 1.22663 0.99449 0.93545 0.85510 1.22816 0.98083 0.91742 0.98792 1.62669 1.57501 1.01801 1.03306 1.22352 0.97977 0.98235 0.87799 1.19086 0.96086 0.95225 0.90450 1.21143 1.28999 1.14082 0.91982 0.92915 1.24984 0.95093 0.95038 0.99117 1.69957 1.31704 1.23504 1.28037 0.86660 0.78405 0.79608 0.83335 1.20305 1.21237 1.20226 0.95317 0.91687 0.91442 0.91047 0.91801 0.95126 0.92187 0.91867 0.91078 0.91689 0.90576 0.90349 0.92489 0.88942 0.94265 0.88740 0.92164 0.95905 0.96551 0.95773 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.31 60.07 0.56 0.75 16 2 N -0.54 -5.56 5.01 -243.16 -1.22 -6.78 16 3 C 0.01 0.13 8.81 60.07 0.53 0.66 16 4 C 0.09 0.99 2.10 -67.71 -0.14 0.85 16 5 H 0.09 1.16 7.72 -51.92 -0.40 0.76 16 6 C -0.15 -1.69 4.50 -26.75 -0.12 -1.81 16 7 C -0.14 -2.00 4.35 -26.73 -0.12 -2.11 16 8 C 0.05 0.80 2.34 -67.49 -0.16 0.64 16 9 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 10 C 0.10 1.37 2.92 -26.81 -0.08 1.29 16 11 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 12 C -0.10 -1.13 4.74 -26.84 -0.13 -1.26 16 13 O -0.38 -5.49 9.29 -35.23 -0.33 -5.82 16 14 C 0.07 0.92 7.01 37.20 0.26 1.18 16 15 C 0.01 0.23 5.01 -3.71 -0.02 0.21 16 16 N -0.53 -9.50 4.69 -226.18 -1.06 -10.56 16 17 C 0.06 1.32 4.30 -3.83 -0.02 1.30 16 18 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 19 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.03 0.26 6.43 -51.93 -0.33 -0.08 16 28 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 6.32 -51.93 -0.33 0.28 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 32 H 0.03 0.28 6.29 -51.93 -0.33 -0.05 16 33 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 34 H 0.06 0.72 6.41 -51.92 -0.33 0.38 16 35 H 0.07 1.07 5.88 -51.93 -0.31 0.76 16 36 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 37 H 0.08 0.77 6.41 -51.93 -0.33 0.44 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.66 6.27 -51.93 -0.33 0.33 16 42 H 0.09 1.75 6.37 -51.93 -0.33 1.42 16 43 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 44 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 45 H 0.02 0.44 6.51 -51.93 -0.34 0.10 16 46 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -29.73 340.00 -9.90 -39.63 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.16 Total: -1.01 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.02 Total: -11.16 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -1.54 Total: -43.36 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.33 Total: -5.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.73 -9.90 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374427713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.619 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds