Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99917 * 2 1 4 4 C 1.46904 * 110.99919 * 123.94618 * 2 1 3 5 5 H 1.09008 * 109.48930 * 55.06170 * 4 2 1 6 6 C 1.53015 * 109.49574 * 295.00739 * 4 2 1 7 7 C 1.52956 * 109.40030 * 179.71279 * 6 4 2 8 8 C 1.53048 * 109.61026 * 60.26313 * 7 6 4 9 9 H 1.09006 * 110.15317 * 61.09470 * 8 7 6 10 10 C 1.53062 * 109.50281 * 300.44857 * 8 7 6 11 11 H 1.08999 * 109.37790 * 178.86791 * 10 8 7 12 12 C 1.52792 * 109.86491 * 59.15463 * 10 8 7 13 13 O 1.42928 * 109.26741 * 298.57452 * 10 8 7 14 14 C 1.43045 * 113.61806 * 300.99240 * 13 10 8 15 15 C 1.53076 * 109.35723 * 58.33203 * 14 13 10 16 16 N 1.47033 * 109.36884 * 303.45773 * 15 14 13 17 17 C 1.46899 * 110.99997 * 182.37158 * 16 15 14 18 18 C 1.52997 * 109.47356 * 66.04541 * 17 16 15 19 19 C 1.50703 * 109.47455 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99860 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99912 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46959 * 60.00314 * 23 21 19 25 25 H 1.48493 * 109.47094 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46951 * 300.00241 * 23 21 19 27 27 H 1.08995 * 109.47213 * 296.04706 * 1 2 3 28 28 H 1.09004 * 109.46631 * 56.05124 * 1 2 3 29 29 H 1.09000 * 109.46949 * 176.04606 * 1 2 3 30 30 H 1.09000 * 109.47137 * 183.95382 * 3 2 1 31 31 H 1.09002 * 109.46781 * 303.95208 * 3 2 1 32 32 H 1.08998 * 109.47236 * 63.95133 * 3 2 1 33 33 H 1.08998 * 109.48899 * 59.72992 * 6 4 2 34 34 H 1.09009 * 109.48393 * 299.68339 * 6 4 2 35 35 H 1.09007 * 109.44679 * 300.22516 * 7 6 4 36 36 H 1.09001 * 109.45090 * 180.31324 * 7 6 4 37 37 H 1.08993 * 109.44426 * 60.61386 * 12 10 8 38 38 H 1.09003 * 109.43776 * 180.49320 * 12 10 8 39 39 H 1.09001 * 109.49176 * 298.36538 * 14 13 10 40 40 H 1.09000 * 109.51202 * 178.30422 * 14 13 10 41 41 H 1.08994 * 109.49119 * 63.42782 * 15 14 13 42 42 H 1.09002 * 109.49186 * 183.49551 * 15 14 13 43 43 H 1.08993 * 109.47521 * 186.05151 * 17 16 15 44 44 H 1.09004 * 109.46983 * 306.04708 * 17 16 15 45 45 H 1.09002 * 109.47328 * 300.00555 * 18 17 16 46 46 H 1.09004 * 109.46938 * 60.00140 * 18 17 16 47 47 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7658 1.1377 5 1 1.5764 -1.7721 1.1239 6 6 1.6092 -0.0697 2.4444 7 6 2.1522 -0.8726 3.6277 8 6 3.6774 -0.9579 3.5339 9 1 4.1125 0.0409 3.5726 10 6 4.0714 -1.6400 2.2215 11 1 5.1580 -1.6816 2.1475 12 6 3.5200 -0.8465 1.0380 13 8 3.5436 -2.9682 2.2034 14 6 4.0024 -3.7820 3.2866 15 6 3.6234 -3.1206 4.6141 16 7 4.1826 -1.7615 4.6590 17 6 3.8873 -1.1130 5.9435 18 6 4.6233 -1.8466 7.0664 19 6 4.3210 -1.1809 8.3842 20 1 3.6687 -0.3208 8.4175 21 6 4.8762 -1.6705 9.5473 22 7 5.6701 -2.7182 9.5068 23 14 4.5008 -0.8457 11.1808 24 1 3.0383 -0.8922 11.4342 25 1 5.2153 -1.5578 12.2706 26 1 4.9509 0.5687 11.1361 27 1 -0.3633 0.4512 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 0.5234 -0.0065 2.5156 34 1 2.0338 0.9342 2.4609 35 1 1.7307 -1.8777 3.6082 36 1 1.8727 -0.3804 4.5592 37 1 3.9380 0.1601 1.0497 38 1 3.7969 -1.3428 0.1079 39 1 5.0858 -3.8872 3.2290 40 1 3.5377 -4.7660 3.2249 41 1 2.5379 -3.0702 4.6983 42 1 4.0257 -3.7067 5.4404 43 1 4.2172 -0.0747 5.9107 44 1 2.8138 -1.1474 6.1297 45 1 4.2934 -2.8850 7.0993 46 1 5.6968 -1.8122 6.8803 47 1 6.0604 -3.0629 10.3252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374427713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = -59.618949 kcal Electronic energy + Delta-G solvation = -23941.838172 eV Core-core repulsion = 20737.418785 eV Total energy + Delta-G solvation = -3204.419387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77088 -39.17679 -37.34699 -35.48238 -34.84110 -32.10666 -31.28694 -30.50617 -28.44910 -28.20811 -25.99676 -24.99707 -23.98745 -23.88149 -22.07179 -20.86436 -19.75261 -18.65323 -17.40803 -17.29140 -16.89379 -16.76049 -16.43561 -15.91373 -15.67065 -15.41808 -15.09662 -14.90103 -14.58801 -14.45981 -14.13139 -14.03782 -13.52339 -13.31264 -13.11544 -12.88263 -12.84615 -12.79304 -12.66982 -12.54919 -12.42387 -12.20106 -11.92788 -11.81874 -11.73922 -11.51227 -11.36824 -11.32413 -11.04859 -10.55685 -10.42684 -9.21322 -9.14329 -8.21833 -6.33313 1.38592 1.41551 1.49553 2.38170 2.77814 2.87883 3.09954 3.11540 3.65383 3.73140 3.94574 3.99134 4.04477 4.12977 4.19494 4.31349 4.34890 4.38761 4.44298 4.47106 4.55942 4.60439 4.62546 4.67796 4.71964 4.75660 4.79552 4.86035 4.89650 5.02312 5.04717 5.06247 5.10761 5.13484 5.14920 5.26306 5.35502 5.42928 5.62532 5.75402 6.03487 6.11114 6.16109 6.17405 6.25617 6.28734 6.83165 7.35761 8.90001 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.003827 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.148787 B = 7313.724366 C = 7930.405746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.013 3.987 4 C 0.096 3.904 5 H 0.075 0.925 6 C -0.136 4.136 7 C -0.135 4.135 8 C 0.054 3.946 9 H 0.089 0.911 10 C 0.104 3.896 11 H 0.063 0.937 12 C -0.093 4.093 13 O -0.383 6.383 14 C 0.072 3.928 15 C 0.016 3.984 16 N -0.541 5.541 17 C 0.082 3.918 18 C 0.038 3.962 19 C -0.546 4.546 20 H 0.058 0.942 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.266 1.266 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.021 0.979 45 H -0.005 1.005 46 H -0.008 1.008 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 5.108 -19.808 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.135 4.135 4 C -0.013 4.013 5 H 0.093 0.907 6 C -0.176 4.176 7 C -0.175 4.175 8 C -0.055 4.055 9 H 0.107 0.893 10 C 0.045 3.955 11 H 0.081 0.919 12 C -0.131 4.131 13 O -0.302 6.302 14 C -0.005 4.005 15 C -0.112 4.112 16 N -0.264 5.264 17 C -0.045 4.045 18 C 0.001 3.999 19 C -0.585 4.585 20 H 0.076 0.924 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.191 1.191 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.134 0.866 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.039 0.961 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.673 4.665 -20.347 22.240 hybrid contribution -0.909 0.583 2.482 2.706 sum -8.582 5.248 -17.865 20.502 Atomic orbital electron populations 1.22435 0.86954 1.02422 1.00937 1.62293 1.08506 1.14565 1.41712 1.22546 1.01446 0.88512 1.00950 1.21540 0.95160 0.97255 0.87348 0.90700 1.22056 1.00741 0.99680 0.95087 1.21935 0.96463 1.00631 0.98447 1.22507 0.93671 0.97824 0.91487 0.89258 1.22066 0.97478 0.82509 0.93456 0.91861 1.21522 0.94660 1.00128 0.96775 1.87917 1.71313 1.23177 1.47791 1.22657 0.99672 0.94238 0.83906 1.22785 0.97727 0.91046 0.99645 1.62572 1.58377 1.02594 1.02880 1.21946 0.96902 0.97611 0.88032 1.18901 0.94477 0.94576 0.91969 1.21577 1.29217 1.14467 0.93231 0.92354 1.25940 0.94695 0.95580 1.03285 1.70095 1.32684 1.24979 1.29245 0.85507 0.78629 0.78757 0.78189 1.19237 1.20734 1.19132 0.95398 0.90283 0.91615 0.90633 0.90540 0.95223 0.91736 0.91115 0.92243 0.93181 0.89044 0.89882 0.92530 0.86574 0.94413 0.91278 0.92062 0.96084 0.98704 0.98980 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.31 127.69 1.19 1.51 16 2 N -0.55 -9.93 5.01 -923.23 -4.62 -14.55 16 3 C 0.01 0.20 8.81 127.69 1.13 1.32 16 4 C 0.10 1.97 2.10 44.92 0.09 2.06 16 5 H 0.07 1.81 7.72 -2.38 -0.02 1.79 16 6 C -0.14 -2.93 4.50 30.58 0.14 -2.79 16 7 C -0.14 -3.69 4.35 30.60 0.13 -3.56 16 8 C 0.05 1.56 2.34 44.89 0.10 1.66 16 9 H 0.09 2.53 8.09 -2.38 -0.02 2.51 16 10 C 0.10 2.64 2.92 30.55 0.09 2.73 16 11 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 12 C -0.09 -1.89 4.74 30.52 0.14 -1.74 16 13 O -0.38 -10.56 9.29 -148.98 -1.38 -11.95 16 14 C 0.07 2.00 7.01 72.01 0.50 2.51 16 15 C 0.02 0.56 5.01 86.30 0.43 0.99 16 16 N -0.54 -19.72 4.69 -869.51 -4.08 -23.80 16 17 C 0.08 3.53 4.30 86.30 0.37 3.90 16 18 C 0.04 2.05 4.90 29.85 0.15 2.20 16 19 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 20 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 21 C 0.00 0.19 5.46 84.66 0.46 0.65 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 23 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H 0.03 0.44 6.43 -2.39 -0.02 0.43 16 28 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.06 6.32 -2.39 -0.02 1.04 16 31 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 32 H 0.03 0.45 6.29 -2.39 -0.02 0.44 16 33 H 0.06 1.35 6.51 -2.39 -0.02 1.34 16 34 H 0.07 1.44 6.41 -2.38 -0.02 1.43 16 35 H 0.06 1.77 5.88 -2.38 -0.01 1.75 16 36 H 0.05 1.51 6.73 -2.39 -0.02 1.49 16 37 H 0.09 1.60 6.41 -2.39 -0.02 1.59 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.04 1.30 6.27 -2.39 -0.01 1.28 16 42 H 0.07 2.71 6.37 -2.39 -0.02 2.69 16 43 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 44 H 0.02 0.90 6.87 -2.39 -0.02 0.89 16 45 H -0.01 -0.31 6.51 -2.39 -0.02 -0.32 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.25 340.00 -1.68 -65.93 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.93 Total: 14.38 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.17 Total: -19.73 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -8.42 Total: -95.01 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.38 Total: -11.95 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.25 -1.68 -65.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374427713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.306 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds