Wall clock time and date at job start Tue Mar 31 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99966 * 2 1 4 4 C 1.46907 * 111.00037 * 123.94988 * 2 1 3 5 5 H 1.08993 * 109.43640 * 54.91364 * 4 2 1 6 6 C 1.52956 * 109.43365 * 295.00256 * 4 2 1 7 7 C 1.53085 * 109.67334 * 180.44562 * 6 4 2 8 8 C 1.52886 * 109.22505 * 59.77042 * 7 6 4 9 9 H 1.09005 * 109.39411 * 59.26447 * 8 7 6 10 10 C 1.53126 * 109.26276 * 299.46281 * 8 7 6 11 11 H 1.09002 * 109.45101 * 301.34359 * 10 8 7 12 12 C 1.52888 * 109.18962 * 61.13749 * 10 8 7 13 13 O 1.42870 * 109.11670 * 181.59459 * 10 8 7 14 14 C 1.43113 * 113.44750 * 59.13949 * 13 10 8 15 15 C 1.53045 * 109.49024 * 301.59583 * 14 13 10 16 16 N 1.46870 * 110.13420 * 179.59989 * 8 7 6 17 17 C 1.46894 * 111.00305 * 302.59098 * 16 8 7 18 18 C 1.52999 * 109.47347 * 170.66286 * 17 16 8 19 19 C 1.50694 * 109.47388 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00591 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99257 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00588 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46934 * 59.99965 * 23 21 19 25 25 H 1.48495 * 109.47223 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46878 * 300.00333 * 23 21 19 27 27 H 1.09004 * 109.46911 * 296.04508 * 1 2 3 28 28 H 1.08995 * 109.47226 * 56.04669 * 1 2 3 29 29 H 1.09004 * 109.46721 * 176.04927 * 1 2 3 30 30 H 1.08993 * 109.47415 * 183.95422 * 3 2 1 31 31 H 1.09004 * 109.46390 * 303.95363 * 3 2 1 32 32 H 1.08998 * 109.47212 * 63.95127 * 3 2 1 33 33 H 1.08996 * 109.43885 * 60.37789 * 6 4 2 34 34 H 1.09004 * 109.40099 * 300.48466 * 6 4 2 35 35 H 1.09005 * 109.50680 * 299.84826 * 7 6 4 36 36 H 1.08994 * 109.55318 * 179.72163 * 7 6 4 37 37 H 1.09000 * 109.51423 * 59.44439 * 12 10 8 38 38 H 1.09001 * 109.51405 * 179.59159 * 12 10 8 39 39 H 1.08997 * 109.46920 * 61.60268 * 14 13 10 40 40 H 1.09000 * 109.46936 * 181.59224 * 14 13 10 41 41 H 1.08994 * 109.47178 * 176.33336 * 15 14 13 42 42 H 1.08996 * 109.47448 * 296.33584 * 15 14 13 43 43 H 1.09003 * 109.47276 * 290.66327 * 17 16 8 44 44 H 1.09001 * 109.46981 * 50.66217 * 17 16 8 45 45 H 1.09003 * 109.46967 * 300.00231 * 18 17 16 46 46 H 1.09001 * 109.47136 * 60.00026 * 18 17 16 47 47 H 0.97006 * 119.99605 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.5739 -1.7709 1.1245 6 6 1.6087 -0.0689 2.4431 7 6 2.1642 -0.8568 3.6323 8 6 3.6872 -0.9309 3.5198 9 1 4.0990 0.0783 3.5107 10 6 4.0634 -1.6468 2.2195 11 1 3.6281 -2.6462 2.2164 12 6 3.5203 -0.8511 1.0324 13 8 5.4861 -1.7474 2.1355 14 6 6.0720 -2.4620 3.2283 15 6 5.7061 -1.7719 4.5445 16 7 4.2425 -1.6755 4.6574 17 6 3.8524 -1.0578 5.9318 18 6 4.2467 -1.9799 7.0873 19 6 3.8459 -1.3466 8.3946 20 1 3.3591 -0.3825 8.4008 21 6 4.1007 -1.9977 9.5830 22 7 4.6930 -3.1719 9.5754 23 14 3.6046 -1.2123 11.2036 24 1 2.1354 -0.9974 11.2201 25 1 3.9860 -2.1079 12.3249 26 1 4.2974 0.0925 11.3537 27 1 -0.3633 0.4512 0.9234 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7044 1.8724 0.9233 33 1 0.5226 -0.0163 2.5183 34 1 2.0220 0.9397 2.4513 35 1 1.7493 -1.8647 3.6269 36 1 1.8918 -0.3558 4.5611 37 1 3.9446 0.1529 1.0423 38 1 3.7915 -1.3525 0.1033 39 1 5.6951 -3.4847 3.2374 40 1 7.1559 -2.4753 3.1142 41 1 6.0974 -2.3522 5.3800 42 1 6.1385 -0.7715 4.5627 43 1 4.3606 -0.0998 6.0419 44 1 2.7739 -0.9005 5.9442 45 1 3.7385 -2.9379 6.9772 46 1 5.3252 -2.1372 7.0749 47 1 4.8727 -3.6299 10.4114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374427715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:27 Heat of formation + Delta-G solvation = -41.103822 kcal Electronic energy + Delta-G solvation = -23748.388819 eV Core-core repulsion = 20544.772309 eV Total energy + Delta-G solvation = -3203.616511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41193 -38.35811 -35.99857 -34.58464 -32.94292 -30.44476 -29.86922 -29.61224 -27.80176 -26.60060 -24.53253 -24.05753 -22.64661 -21.85776 -20.50807 -19.74812 -19.43121 -16.83102 -16.41529 -15.76727 -15.42276 -15.24245 -15.14412 -14.83198 -14.44935 -14.41090 -14.17067 -13.67449 -13.39111 -13.31729 -12.81109 -12.42133 -12.29307 -12.10838 -11.99923 -11.91216 -11.75243 -11.32437 -11.19131 -11.05188 -11.01471 -10.91377 -10.71586 -10.56258 -10.45325 -10.13575 -9.91054 -9.48185 -9.19537 -9.08173 -8.43719 -8.35102 -7.80893 -6.02077 -4.04685 3.31337 3.35957 3.38043 3.54709 4.01071 4.23887 4.46950 4.61774 4.78585 4.91384 5.00659 5.08503 5.13644 5.18082 5.30909 5.31778 5.33737 5.37393 5.40991 5.44639 5.45960 5.55384 5.59057 5.67113 5.72445 5.82396 5.89857 5.95688 6.00538 6.08723 6.14588 6.19283 6.26573 6.31998 6.39512 6.49366 6.83279 6.84809 6.94285 7.32460 7.42127 7.51078 7.74806 7.85466 8.04362 8.40430 9.02064 9.59029 11.09234 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.003964 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.042101 B = 7062.181763 C = 7990.898151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.015 3.985 4 C 0.088 3.912 5 H 0.086 0.914 6 C -0.152 4.152 7 C -0.108 4.108 8 C 0.055 3.945 9 H 0.040 0.960 10 C 0.102 3.898 11 H 0.065 0.935 12 C -0.101 4.101 13 O -0.386 6.386 14 C 0.066 3.934 15 C 0.018 3.982 16 N -0.531 5.531 17 C 0.059 3.941 18 C 0.030 3.970 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 5.393 -18.846 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.133 4.133 4 C -0.021 4.021 5 H 0.104 0.896 6 C -0.192 4.192 7 C -0.147 4.147 8 C -0.054 4.054 9 H 0.058 0.942 10 C 0.043 3.957 11 H 0.083 0.917 12 C -0.139 4.139 13 O -0.305 6.305 14 C -0.011 4.011 15 C -0.110 4.110 16 N -0.256 5.256 17 C -0.067 4.067 18 C -0.008 4.008 19 C -0.562 4.562 20 H 0.071 0.929 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.406 4.623 -19.336 20.363 hybrid contribution -0.293 1.557 2.121 2.648 sum -4.699 6.180 -17.214 18.884 Atomic orbital electron populations 1.22411 0.87445 1.02319 1.00562 1.62233 1.07829 1.13979 1.42173 1.22498 1.01272 0.89078 1.00497 1.21678 0.94707 0.97893 0.87790 0.89561 1.22248 1.00958 1.00241 0.95705 1.21515 0.93992 1.01266 0.97883 1.22193 0.95463 0.95742 0.91995 0.94250 1.22003 0.81523 0.98688 0.93500 0.91689 1.21481 0.93627 1.00974 0.97802 1.87898 1.19864 1.76891 1.45857 1.22684 0.97900 0.95237 0.85294 1.22790 0.89187 1.00171 0.98860 1.62395 1.09070 1.51626 1.02492 1.22434 0.99746 0.96472 0.88075 1.19076 0.96753 0.94841 0.90109 1.21142 1.39209 1.04625 0.91251 0.92918 1.24983 0.95204 0.94887 0.99144 1.69960 1.42110 1.14147 1.26974 0.86658 0.79006 0.79146 0.83189 1.20231 1.21234 1.20300 0.95132 0.91550 0.91331 0.90945 0.91680 0.95028 0.91492 0.91653 0.90805 0.90792 0.91186 0.90311 0.92361 0.88788 0.88486 0.94737 0.96326 0.91471 0.95726 0.96587 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.31 60.06 0.56 0.73 16 2 N -0.54 -5.30 5.00 -243.15 -1.22 -6.52 16 3 C 0.01 0.13 8.82 60.07 0.53 0.66 16 4 C 0.09 0.93 2.23 -67.69 -0.15 0.78 16 5 H 0.09 0.93 8.13 -51.93 -0.42 0.50 16 6 C -0.15 -1.69 4.51 -26.71 -0.12 -1.81 16 7 C -0.11 -1.48 4.97 -26.75 -0.13 -1.62 16 8 C 0.06 0.85 1.78 -67.72 -0.12 0.73 16 9 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 10 C 0.10 1.43 2.63 -26.72 -0.07 1.35 16 11 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.10 -1.18 4.69 -26.75 -0.13 -1.31 16 13 O -0.39 -5.91 10.52 -35.23 -0.37 -6.28 16 14 C 0.07 0.96 7.00 37.18 0.26 1.22 16 15 C 0.02 0.31 5.42 -3.69 -0.02 0.29 16 16 N -0.53 -9.73 4.57 -226.46 -1.04 -10.77 16 17 C 0.06 1.25 4.67 -3.83 -0.02 1.23 16 18 C 0.03 0.76 4.90 -27.89 -0.14 0.63 16 19 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 20 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 23 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.03 0.25 6.44 -51.93 -0.33 -0.08 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.66 6.33 -51.93 -0.33 0.33 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.03 0.28 6.27 -51.93 -0.33 -0.04 16 33 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 34 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 37 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.81 6.39 -51.93 -0.33 1.48 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.07 1.39 5.82 -51.93 -0.30 1.08 16 45 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -30.05 344.83 -9.99 -40.04 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -8.32 Total: -1.65 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.04 Total: -10.59 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -1.52 Total: -43.29 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.37 Total: -6.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.05 -9.99 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374427715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.063 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds