Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99741 * 2 1 4 4 C 1.46905 * 111.00081 * 123.95534 * 2 1 3 5 5 H 1.08992 * 109.43455 * 299.56320 * 4 2 1 6 6 C 1.52952 * 109.43333 * 179.64760 * 4 2 1 7 7 C 1.53076 * 109.68710 * 299.46919 * 6 4 2 8 8 C 1.52888 * 109.22794 * 300.23319 * 7 6 4 9 9 H 1.08999 * 109.45787 * 300.73858 * 8 7 6 10 10 C 1.53126 * 109.21078 * 60.55130 * 8 7 6 11 11 H 1.09000 * 109.44088 * 58.69608 * 10 8 7 12 12 C 1.52885 * 109.25396 * 298.82020 * 10 8 7 13 13 O 1.42867 * 109.12958 * 178.35211 * 10 8 7 14 14 C 1.43116 * 113.44044 * 300.84584 * 13 10 8 15 15 C 1.53046 * 109.48469 * 58.40928 * 14 13 10 16 16 N 1.46877 * 110.12789 * 180.36090 * 8 7 6 17 17 C 1.46899 * 110.99767 * 57.49315 * 16 8 7 18 18 C 1.53002 * 109.47087 * 170.00097 * 17 16 8 19 19 C 1.50703 * 109.47438 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99381 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00390 * 180.27577 * 19 18 17 22 22 N 1.31511 * 119.99724 * 359.72852 * 21 19 18 23 23 Si 1.86800 * 120.00151 * 179.72650 * 21 19 18 24 24 H 1.48499 * 109.46958 * 89.99961 * 23 21 19 25 25 H 1.48498 * 109.47048 * 210.00170 * 23 21 19 26 26 H 1.48502 * 109.47032 * 330.00214 * 23 21 19 27 27 H 1.09002 * 109.47438 * 296.04409 * 1 2 3 28 28 H 1.08999 * 109.47430 * 56.04586 * 1 2 3 29 29 H 1.09004 * 109.46830 * 176.04491 * 1 2 3 30 30 H 1.09008 * 109.47068 * 190.12680 * 3 2 1 31 31 H 1.08997 * 109.47376 * 310.12928 * 3 2 1 32 32 H 1.09000 * 109.46939 * 70.13074 * 3 2 1 33 33 H 1.09000 * 109.43386 * 179.40276 * 6 4 2 34 34 H 1.09003 * 109.43687 * 59.53976 * 6 4 2 35 35 H 1.08998 * 109.50938 * 180.30617 * 7 6 4 36 36 H 1.08993 * 109.51046 * 60.15966 * 7 6 4 37 37 H 1.09002 * 109.55235 * 300.68058 * 12 10 8 38 38 H 1.09002 * 109.55354 * 180.53302 * 12 10 8 39 39 H 1.08996 * 109.46896 * 178.41290 * 14 13 10 40 40 H 1.09001 * 109.46470 * 298.40961 * 14 13 10 41 41 H 1.08996 * 109.47048 * 183.66443 * 15 14 13 42 42 H 1.08999 * 109.47001 * 63.66664 * 15 14 13 43 43 H 1.09005 * 109.47108 * 50.00542 * 17 16 8 44 44 H 1.08999 * 109.47579 * 290.00422 * 17 16 8 45 45 H 1.09005 * 109.47242 * 60.00518 * 18 17 16 46 46 H 1.08999 * 109.47177 * 300.00571 * 18 17 16 47 47 H 0.97001 * 119.99872 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6520 -0.3151 2.0685 6 6 3.5244 -0.7500 1.0979 7 6 4.0132 -1.3923 -0.2027 8 6 3.5116 -2.8349 -0.2715 9 1 3.8870 -3.3912 0.5874 10 6 1.9805 -2.8374 -0.2510 11 1 1.6054 -2.2588 -1.0952 12 6 1.4927 -2.2095 1.0548 13 8 1.5131 -4.1835 -0.3541 14 6 1.9478 -4.8475 -1.5450 15 6 3.4774 -4.8542 -1.5964 16 7 3.9772 -3.4735 -1.5095 17 6 5.4429 -3.4373 -1.6014 18 6 5.9030 -4.3201 -2.7633 19 6 7.4066 -4.2836 -2.8572 20 1 7.9770 -3.6904 -2.1578 21 6 8.0537 -5.0032 -3.8392 22 7 7.3591 -5.7258 -4.6906 23 14 9.9171 -4.9519 -3.9603 24 1 10.4972 -6.0376 -3.1298 25 1 10.3265 -5.1386 -5.3755 26 1 10.4089 -3.6385 -3.4719 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0701 1.3481 -0.1807 31 1 1.5072 1.9480 -0.7857 32 1 1.7994 1.8358 0.9665 33 1 3.9151 -1.3095 1.9479 34 1 3.8778 0.2799 1.1491 35 1 5.1030 -1.3843 -0.2255 36 1 3.6265 -0.8314 -1.0535 37 1 1.8795 -2.7788 1.9001 38 1 0.4030 -2.2174 1.0787 39 1 1.5799 -5.8735 -1.5439 40 1 1.5573 -4.3225 -2.4168 41 1 3.8074 -5.3017 -2.5339 42 1 3.8665 -5.4348 -0.7599 43 1 5.8745 -3.8071 -0.6712 44 1 5.7712 -2.4120 -1.7719 45 1 5.4714 -3.9503 -3.6935 46 1 5.5747 -5.3454 -2.5928 47 1 7.8143 -6.2318 -5.3817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374427716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -38.042248 kcal Electronic energy + Delta-G solvation = -24060.368886 eV Core-core repulsion = 20856.885135 eV Total energy + Delta-G solvation = -3203.483751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34273 -38.14081 -35.91374 -34.37546 -32.86138 -30.64277 -29.83038 -29.71047 -27.36707 -26.54275 -24.38299 -23.79513 -22.94275 -21.71474 -20.67366 -19.43646 -19.04727 -16.73715 -16.36441 -15.87979 -15.49309 -15.31166 -14.88651 -14.68264 -14.52182 -14.41410 -13.71387 -13.36409 -13.31091 -12.97262 -12.61525 -12.50663 -12.39939 -12.17266 -12.06862 -11.80346 -11.62226 -11.41567 -11.05816 -11.01913 -10.91409 -10.77904 -10.59648 -10.50395 -10.28184 -9.94146 -9.90674 -9.37279 -9.07920 -8.98652 -8.40529 -8.33545 -7.67000 -5.99713 -4.01757 3.32311 3.38558 3.41925 3.76282 3.94852 4.33537 4.50915 4.70610 4.78323 5.03011 5.11475 5.19524 5.22257 5.26772 5.36481 5.39728 5.42848 5.49376 5.52910 5.54588 5.62729 5.64273 5.67420 5.73046 5.76015 5.87940 5.97425 6.03435 6.05538 6.24407 6.31317 6.32652 6.38518 6.45446 6.54207 6.67088 6.92768 6.93900 6.97247 7.47373 7.52086 7.62545 7.80435 7.87094 8.05785 8.43959 9.04735 9.61900 11.11756 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.004170 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.807825 B = 6713.627344 C = 7420.844518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.023 3.977 4 C 0.089 3.911 5 H 0.043 0.957 6 C -0.115 4.115 7 C -0.103 4.103 8 C 0.060 3.940 9 H 0.035 0.965 10 C 0.106 3.894 11 H 0.078 0.922 12 C -0.104 4.104 13 O -0.394 6.394 14 C 0.067 3.933 15 C 0.017 3.983 16 N -0.531 5.531 17 C 0.063 3.937 18 C 0.021 3.979 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.959 10.428 11.410 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.125 4.125 4 C -0.019 4.019 5 H 0.061 0.939 6 C -0.153 4.153 7 C -0.141 4.141 8 C -0.049 4.049 9 H 0.053 0.947 10 C 0.048 3.952 11 H 0.096 0.904 12 C -0.142 4.142 13 O -0.313 6.313 14 C -0.010 4.010 15 C -0.112 4.112 16 N -0.255 5.255 17 C -0.063 4.063 18 C -0.016 4.016 19 C -0.559 4.559 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.080 10.260 10.561 20.373 hybrid contribution 1.360 -0.051 1.103 1.752 sum -12.721 10.209 11.664 20.052 Atomic orbital electron populations 1.22454 0.87600 1.02573 1.00132 1.61983 1.07539 1.13535 1.42993 1.22426 1.01605 0.88661 0.99853 1.21637 0.95565 0.93342 0.91341 0.93878 1.21674 0.93632 1.01110 0.98890 1.21431 1.00328 0.94573 0.97756 1.22160 0.95395 0.95642 0.91719 0.94712 1.21963 0.92324 0.82846 0.98026 0.90402 1.21551 1.01052 0.94121 0.97508 1.87865 1.74223 1.26507 1.42716 1.22670 0.93901 0.97091 0.87342 1.22831 0.94767 0.90577 1.02989 1.62390 1.12746 1.16175 1.34232 1.22338 0.83498 1.01165 0.99329 1.19231 0.95579 0.94126 0.92660 1.21176 0.91940 1.28422 1.14391 0.92806 1.24982 0.98243 0.95407 0.95631 1.69961 1.35322 1.30225 1.17797 0.86598 0.85841 0.78382 0.77202 1.20736 1.21189 1.19876 0.96001 0.91432 0.90890 0.90774 0.91552 0.95967 0.91636 0.91518 0.91706 0.89825 0.91031 0.91082 0.89058 0.92598 0.88092 0.94788 0.96405 0.91639 0.95690 0.96311 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.19 60.06 0.55 0.74 16 2 N -0.54 -5.63 3.37 -243.16 -0.82 -6.45 16 3 C 0.02 0.20 8.96 60.06 0.54 0.74 16 4 C 0.09 0.94 2.25 -67.69 -0.15 0.79 16 5 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 6 C -0.11 -1.28 4.96 -26.72 -0.13 -1.41 16 7 C -0.10 -1.46 4.80 -26.75 -0.13 -1.59 16 8 C 0.06 0.97 1.75 -67.72 -0.12 0.85 16 9 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 10 C 0.11 1.56 2.48 -26.72 -0.07 1.49 16 11 H 0.08 1.23 7.56 -51.93 -0.39 0.84 16 12 C -0.10 -1.23 4.76 -26.75 -0.13 -1.36 16 13 O -0.39 -6.32 10.52 -35.23 -0.37 -6.69 16 14 C 0.07 1.04 7.00 37.18 0.26 1.30 16 15 C 0.02 0.30 4.93 -3.69 -0.02 0.29 16 16 N -0.53 -10.11 4.72 -226.46 -1.07 -11.17 16 17 C 0.06 1.37 4.43 -3.82 -0.02 1.35 16 18 C 0.02 0.55 4.26 -27.88 -0.12 0.44 16 19 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 29 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 30 H 0.07 0.69 6.60 -51.92 -0.34 0.35 16 31 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 32 H 0.02 0.18 8.12 -51.93 -0.42 -0.24 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.66 6.46 -51.93 -0.34 0.33 16 35 H 0.06 0.98 6.65 -51.93 -0.35 0.64 16 36 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.78 6.38 -51.93 -0.33 0.45 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.03 6.08 -51.93 -0.32 1.71 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 44 H 0.07 1.41 6.90 -51.93 -0.36 1.05 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.02 0.51 6.28 -51.93 -0.33 0.18 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -30.36 345.49 -9.77 -40.13 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.49 Total: -1.71 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -1.15 Total: -43.74 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.37 Total: -6.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.36 -9.77 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374427716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.086 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds