Wall clock time and date at job start Tue Mar 31 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47058 * 239.99828 * 2 1 3 5 5 H 1.08995 * 109.47674 * 304.21938 * 4 2 1 6 6 C 1.53000 * 109.47044 * 64.21954 * 4 2 1 7 7 C 1.53003 * 109.47266 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47437 * 300.00031 * 7 6 4 9 9 H 1.08994 * 109.47363 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46914 * 299.99890 * 8 7 6 11 11 C 1.52999 * 109.47099 * 59.99412 * 8 7 6 12 12 C 1.52999 * 109.46925 * 184.21412 * 4 2 1 13 13 H 1.08996 * 109.47591 * 300.00208 * 12 4 2 14 14 O 1.42894 * 109.47178 * 60.00405 * 12 4 2 15 15 C 1.42897 * 114.00396 * 209.99958 * 14 12 4 16 16 C 1.53004 * 109.47550 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.46578 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46801 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00088 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00184 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99707 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00247 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46876 * 89.99649 * 23 21 19 25 25 H 1.48499 * 109.47283 * 209.99821 * 23 21 19 26 26 H 1.48504 * 109.46991 * 329.99763 * 23 21 19 27 27 H 1.09004 * 109.47151 * 54.36313 * 1 2 3 28 28 H 1.08998 * 109.47008 * 174.35970 * 1 2 3 29 29 H 1.08996 * 109.46900 * 294.36481 * 1 2 3 30 30 H 1.09000 * 109.46869 * 119.99980 * 2 1 3 31 31 H 1.08995 * 109.47283 * 300.00201 * 3 2 1 32 32 H 1.09003 * 109.46833 * 59.99904 * 3 2 1 33 33 H 1.08998 * 109.46810 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46984 * 299.99767 * 6 4 2 35 35 H 1.08998 * 109.47614 * 59.99630 * 6 4 2 36 36 H 1.09006 * 109.46719 * 60.00207 * 7 6 4 37 37 H 1.09001 * 109.47276 * 179.97438 * 7 6 4 38 38 H 1.09003 * 109.46986 * 59.99818 * 10 8 7 39 39 H 1.08999 * 109.46964 * 179.97438 * 10 8 7 40 40 H 1.09003 * 109.47143 * 300.00044 * 10 8 7 41 41 H 1.09008 * 109.47126 * 60.00364 * 11 8 7 42 42 H 1.08999 * 109.47166 * 180.02562 * 11 8 7 43 43 H 1.09005 * 109.47006 * 300.00006 * 15 14 12 44 44 H 1.08999 * 109.46961 * 59.99722 * 15 14 12 45 45 H 1.08995 * 109.46883 * 300.00130 * 16 15 14 46 46 H 1.08999 * 109.47137 * 59.99926 * 16 15 14 47 47 H 1.08995 * 109.47053 * 299.99511 * 17 16 15 48 48 H 1.08999 * 109.47130 * 60.00014 * 17 16 15 49 49 H 1.09004 * 109.47180 * 299.99462 * 18 17 16 50 50 H 1.08999 * 109.47394 * 60.00156 * 18 17 16 51 51 H 0.97003 * 120.00117 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6163 -1.7248 -1.2879 6 6 1.6185 0.0586 -2.4962 7 6 2.1290 -0.6623 -3.7455 8 6 3.6553 -0.7544 -3.6933 9 1 4.0189 -1.2683 -4.5830 10 6 4.2496 0.6545 -3.6389 11 6 4.0769 -1.5342 -2.4463 12 6 3.5663 -0.8137 -1.1973 13 1 3.9901 0.1898 -1.1587 14 8 3.9601 -1.5421 -0.0327 15 6 5.2284 -1.1507 0.4965 16 6 5.5459 -1.9914 1.7348 17 6 6.9043 -1.5727 2.3010 18 6 7.2219 -2.4138 3.5389 19 6 8.5596 -2.0010 4.0970 20 1 9.1266 -1.2174 3.6165 21 6 9.0600 -2.6244 5.2203 22 7 8.3697 -3.5790 5.8052 23 14 10.7184 -2.1132 5.9116 24 1 10.5268 -1.0255 6.9043 25 1 11.3600 -3.2785 6.5718 26 1 11.5867 -1.6293 4.8084 27 1 -0.3634 0.5988 -0.8352 28 1 -0.3633 -1.0227 -0.1010 29 1 -0.3633 0.4239 0.9361 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 0.5311 0.1245 -2.5332 35 1 2.0422 1.0622 -2.4577 36 1 1.7055 -1.6660 -3.7842 37 1 1.8283 -0.1069 -4.6339 38 1 3.8859 1.1681 -2.7489 39 1 5.3370 0.5889 -3.6012 40 1 3.9492 1.2101 -4.5272 41 1 3.6535 -2.5379 -2.4850 42 1 5.1643 -1.5994 -2.4089 43 1 6.0004 -1.3072 -0.2570 44 1 5.1977 -0.0965 0.7716 45 1 4.7739 -1.8345 2.4881 46 1 5.5766 -3.0457 1.4601 47 1 7.6760 -1.7300 1.5476 48 1 6.8741 -0.5183 2.5756 49 1 6.4502 -2.2569 4.2926 50 1 7.2523 -3.4681 3.2639 51 1 8.7216 -4.0173 6.5957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385392843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:38 Heat of formation + Delta-G solvation = -108.669955 kcal Electronic energy + Delta-G solvation = -23288.082556 eV Core-core repulsion = 20185.076502 eV Total energy + Delta-G solvation = -3103.006055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29847 -37.10379 -35.73148 -34.49677 -32.32487 -30.55233 -30.02324 -28.27064 -27.43017 -26.69235 -24.71928 -23.48940 -22.28233 -21.61985 -20.02356 -19.72711 -18.56678 -16.81027 -16.20347 -15.75598 -15.61677 -15.05045 -14.55825 -14.46530 -14.32648 -14.11321 -13.83267 -13.31867 -13.16047 -12.95741 -12.63951 -12.48354 -12.34147 -12.08876 -11.92582 -11.70326 -11.49632 -11.38270 -11.27180 -11.19374 -11.04327 -10.91825 -10.78823 -10.69349 -10.53176 -10.39839 -10.24067 -10.17784 -10.03490 -9.63194 -9.27265 -9.17672 -9.01057 -8.31245 -5.96274 -3.98613 3.33864 3.39824 3.43260 3.77152 4.40546 4.46915 4.48885 4.68466 4.82548 4.86590 4.90926 5.11251 5.14250 5.19412 5.21796 5.27376 5.38619 5.39330 5.43819 5.48131 5.52113 5.54197 5.58188 5.65406 5.74587 5.77125 5.78363 5.82604 5.84888 5.87091 5.90066 5.99936 6.05199 6.09906 6.14576 6.19371 6.21626 6.26331 6.34806 6.41036 6.53282 6.83014 6.96752 7.15161 7.51051 7.72499 7.87974 8.04658 8.46957 9.08757 9.65094 11.15115 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.002893 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.483005 B = 9675.865587 C =10233.496349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.089 4.089 9 H 0.069 0.931 10 C -0.154 4.154 11 C -0.138 4.138 12 C 0.092 3.908 13 H 0.062 0.938 14 O -0.380 6.380 15 C 0.065 3.935 16 C -0.115 4.115 17 C -0.107 4.107 18 C 0.021 3.979 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 8.749 -19.861 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.093 0.907 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.107 4.107 9 H 0.088 0.912 10 C -0.211 4.211 11 C -0.176 4.176 12 C 0.035 3.965 13 H 0.080 0.920 14 O -0.300 6.300 15 C -0.012 4.012 16 C -0.153 4.153 17 C -0.145 4.145 18 C -0.016 4.016 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.690 8.481 -19.630 26.522 hybrid contribution 1.173 0.347 0.350 1.273 sum -14.517 8.829 -19.280 25.698 Atomic orbital electron populations 1.21867 0.95543 1.01546 1.01382 1.21088 0.95243 0.96069 0.98696 1.21951 1.01063 0.96290 1.01462 1.21222 0.93852 0.99826 0.94518 0.90662 1.21716 1.00713 0.99529 0.93507 1.21600 0.95148 1.00798 0.97828 1.21059 0.95513 0.96313 0.97852 0.91231 1.21974 1.00742 0.96494 1.01888 1.22071 1.01171 0.99934 0.94384 1.22114 0.94544 0.94758 0.85127 0.91964 1.87912 1.37013 1.61884 1.43163 1.22680 0.84413 0.98123 0.95958 1.21624 0.99123 0.99602 0.94954 1.21572 0.93282 1.00205 0.99452 1.19087 0.96332 0.94875 0.91267 1.21280 1.04021 1.19479 1.11094 0.92750 1.25037 0.97479 0.95096 0.96935 1.69973 1.38116 1.24619 1.20804 0.86603 0.84219 0.78054 0.79179 1.20687 1.21229 1.19903 0.92862 0.92798 0.92900 0.90037 0.92664 0.92837 0.92786 0.91482 0.91208 0.91946 0.92073 0.92080 0.92720 0.92807 0.91242 0.91779 0.93937 0.93927 0.91789 0.91801 0.93426 0.93419 0.96565 0.96556 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.79 37.16 0.33 -0.94 16 2 C -0.09 -0.94 2.62 -90.62 -0.24 -1.18 16 3 C -0.15 -1.42 8.47 37.16 0.31 -1.10 16 4 C -0.08 -0.75 1.72 -90.62 -0.16 -0.91 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.12 -0.93 4.21 -26.73 -0.11 -1.05 16 7 C -0.12 -0.89 5.45 -26.73 -0.15 -1.03 16 8 C -0.09 -0.75 3.20 -90.62 -0.29 -1.04 16 9 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 10 C -0.15 -1.23 8.50 37.16 0.32 -0.92 16 11 C -0.14 -1.45 5.06 -26.75 -0.14 -1.59 16 12 C 0.09 1.06 1.51 -26.75 -0.04 1.02 16 13 H 0.06 0.70 4.47 -51.93 -0.23 0.47 16 14 O -0.38 -5.59 9.24 -35.23 -0.33 -5.91 16 15 C 0.06 0.98 5.75 37.16 0.21 1.20 16 16 C -0.12 -2.09 5.58 -26.73 -0.15 -2.24 16 17 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 18 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 19 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 23 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.05 0.40 6.83 -51.93 -0.35 0.05 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.02 7.56 -51.93 -0.39 0.62 16 31 H 0.05 0.45 6.35 -51.93 -0.33 0.12 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.55 6.54 -51.93 -0.34 0.21 16 34 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 35 H 0.07 0.55 4.64 -51.93 -0.24 0.31 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.06 0.71 7.87 -51.93 -0.41 0.31 16 43 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 44 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -30.19 376.93 -9.74 -39.93 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -10.03 Total: -4.29 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -0.78 Total: -25.62 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.33 Total: -5.91 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.19 -9.74 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385392843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.739 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds