Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47156 * 239.99640 * 2 1 3 5 5 H 1.08999 * 109.47470 * 174.53770 * 4 2 1 6 6 C 1.53000 * 109.46958 * 54.53832 * 4 2 1 7 7 C 1.52998 * 109.47266 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47014 * 60.00019 * 7 6 4 9 9 H 1.09009 * 109.46862 * 59.99771 * 8 7 6 10 10 C 1.52995 * 109.47511 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47256 * 300.00411 * 8 7 6 12 12 C 1.52995 * 109.47331 * 59.99314 * 11 8 7 13 13 H 1.09009 * 109.47109 * 60.00442 * 12 11 8 14 14 O 1.42897 * 109.47330 * 180.02562 * 12 11 8 15 15 C 1.42905 * 114.00242 * 270.00464 * 14 12 11 16 16 C 1.52997 * 109.47231 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47232 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47232 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47078 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99569 * 359.97438 * 19 18 17 21 21 C 1.37869 * 119.99884 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99903 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00374 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46976 * 89.99767 * 23 21 19 25 25 H 1.48491 * 109.47464 * 210.00199 * 23 21 19 26 26 H 1.48506 * 109.46955 * 330.00096 * 23 21 19 27 27 H 1.08999 * 109.47692 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47250 * 300.00273 * 1 2 3 29 29 H 1.09001 * 109.47156 * 60.00339 * 1 2 3 30 30 H 1.09001 * 109.47156 * 119.99661 * 2 1 3 31 31 H 1.09001 * 109.47329 * 65.21960 * 3 2 1 32 32 H 1.09000 * 109.47031 * 185.22106 * 3 2 1 33 33 H 1.09004 * 109.47064 * 305.21265 * 3 2 1 34 34 H 1.08999 * 109.47277 * 299.99779 * 6 4 2 35 35 H 1.09003 * 109.47246 * 60.00357 * 6 4 2 36 36 H 1.08998 * 109.47541 * 300.00700 * 7 6 4 37 37 H 1.08996 * 109.47660 * 179.97438 * 7 6 4 38 38 H 1.08991 * 109.47372 * 179.97438 * 10 8 7 39 39 H 1.09004 * 109.47375 * 300.00285 * 10 8 7 40 40 H 1.09009 * 109.47109 * 60.00088 * 10 8 7 41 41 H 1.09009 * 109.46960 * 299.99942 * 11 8 7 42 42 H 1.09000 * 109.47682 * 179.97438 * 11 8 7 43 43 H 1.09008 * 109.46688 * 299.99721 * 15 14 12 44 44 H 1.09003 * 109.47244 * 59.99518 * 15 14 12 45 45 H 1.09004 * 109.47474 * 299.99840 * 16 15 14 46 46 H 1.09003 * 109.47360 * 59.99638 * 16 15 14 47 47 H 1.08993 * 109.47254 * 300.00041 * 17 16 15 48 48 H 1.09001 * 109.46806 * 60.00113 * 17 16 15 49 49 H 1.09008 * 109.47097 * 299.99697 * 18 17 16 50 50 H 1.08993 * 109.47231 * 59.99680 * 18 17 16 51 51 H 0.97005 * 120.00035 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1255 -0.6374 -1.2995 6 6 1.4209 -0.0838 -2.4947 7 6 1.9314 -0.8046 -3.7439 8 6 1.5371 -2.2815 -3.6774 9 1 0.4514 -2.3658 -3.6273 10 6 2.0469 -3.0023 -4.9269 11 6 2.1560 -2.9191 -2.4320 12 6 1.6456 -2.1981 -1.1827 13 1 0.5600 -2.2824 -1.1326 14 8 2.2242 -2.7932 -0.0195 15 6 1.4576 -3.8691 0.5254 16 6 2.1682 -4.4275 1.7600 17 6 1.3471 -5.5790 2.3438 18 6 2.0580 -6.1378 3.5780 19 6 1.2495 -7.2725 4.1527 20 1 0.3213 -7.5653 3.6846 21 6 1.6943 -7.9358 5.2764 22 7 0.9886 -8.9256 5.7782 23 14 3.2995 -7.4288 6.0864 24 1 3.0298 -6.3883 7.1110 25 1 3.9225 -8.6112 6.7336 26 1 4.2221 -6.8838 5.0583 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7550 1.9286 0.9330 32 1 3.1259 1.4439 -0.0935 33 1 1.6024 1.9826 -0.8397 34 1 0.3353 -0.1677 -2.4444 35 1 1.7022 0.9683 -2.5423 36 1 3.0170 -0.7204 -3.7940 37 1 1.4901 -0.3508 -4.6312 38 1 1.7664 -4.0544 -4.8793 39 1 1.6056 -2.5480 -5.8141 40 1 3.1326 -2.9181 -4.9775 41 1 3.2417 -2.8347 -2.4820 42 1 1.8748 -3.9711 -2.3843 43 1 0.4698 -3.5047 0.8080 44 1 1.3545 -4.6565 -0.2212 45 1 3.1557 -4.7920 1.4771 46 1 2.2716 -3.6403 2.5068 47 1 0.3598 -5.2143 2.6268 48 1 1.2433 -6.3663 1.5971 49 1 3.0452 -6.5028 3.2945 50 1 2.1622 -5.3508 4.3247 51 1 1.3013 -9.3921 6.5691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385392845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = -109.682188 kcal Electronic energy + Delta-G solvation = -23102.782801 eV Core-core repulsion = 19999.732853 eV Total energy + Delta-G solvation = -3103.049948 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12113 -37.14212 -35.83188 -34.63529 -32.32954 -31.05280 -30.24512 -28.73400 -27.38164 -26.42029 -24.80951 -23.06801 -22.00454 -21.48289 -20.30421 -20.03425 -19.09029 -16.66975 -16.40388 -15.81500 -15.66182 -15.18877 -14.78176 -14.60664 -14.23000 -13.95306 -13.46772 -13.37848 -13.27448 -13.04554 -12.82691 -12.56613 -12.48659 -12.11274 -12.01664 -11.90309 -11.66728 -11.48745 -11.40111 -11.32963 -11.14244 -10.88186 -10.83617 -10.69984 -10.66800 -10.43720 -10.25646 -10.13934 -9.86967 -9.67360 -9.52037 -9.26350 -9.13916 -8.50561 -6.01372 -3.99086 3.33834 3.40895 3.45900 3.69203 4.37386 4.44194 4.48657 4.62115 4.73220 4.79473 4.91586 5.06213 5.10300 5.16118 5.22452 5.28021 5.32397 5.35757 5.40063 5.42763 5.45196 5.48994 5.52281 5.61319 5.66754 5.71818 5.74264 5.75350 5.80802 5.83599 5.84729 5.94694 6.00213 6.04694 6.06802 6.08856 6.15619 6.18764 6.30279 6.35485 6.39769 6.66675 6.76202 6.93951 7.35021 7.42776 7.48403 7.83348 8.57477 9.03613 9.61616 11.12207 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.003047 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.390639 B = 9187.212537 C = 9953.813766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.076 4.076 5 H 0.075 0.925 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.090 4.090 9 H 0.068 0.932 10 C -0.147 4.147 11 C -0.137 4.137 12 C 0.094 3.906 13 H 0.059 0.941 14 O -0.381 6.381 15 C 0.064 3.936 16 C -0.118 4.118 17 C -0.100 4.100 18 C -0.014 4.014 19 C -0.520 4.520 20 H 0.071 0.929 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.016 0.984 50 H 0.011 0.989 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.254 20.500 -20.417 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.095 4.095 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.108 4.108 9 H 0.087 0.913 10 C -0.204 4.204 11 C -0.175 4.175 12 C 0.036 3.964 13 H 0.077 0.923 14 O -0.300 6.300 15 C -0.012 4.012 16 C -0.156 4.156 17 C -0.138 4.138 18 C -0.051 4.051 19 C -0.558 4.558 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.034 0.966 50 H 0.030 0.970 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.425 20.425 -20.192 28.757 hybrid contribution 0.538 -0.065 0.444 0.701 sum 1.963 20.360 -19.748 28.432 Atomic orbital electron populations 1.21951 0.95640 1.01690 1.01499 1.21086 0.95573 0.95786 0.98640 1.21867 1.00874 0.96197 1.01412 1.21230 1.00877 0.92772 0.94571 0.90633 1.21676 1.00742 0.99372 0.93531 1.21636 1.01170 0.94826 0.97702 1.21091 1.00203 0.94929 0.94618 0.91331 1.21822 1.01224 1.00314 0.97069 1.22112 1.01527 0.99781 0.94040 1.22078 0.96827 0.92293 0.85182 0.92285 1.87906 1.49283 1.49740 1.43060 1.22662 0.94397 0.88459 0.95717 1.21653 0.99927 0.98788 0.95208 1.21394 0.98493 0.95284 0.98582 1.19565 0.96307 0.96127 0.93095 1.21177 1.08391 1.14854 1.11375 0.91104 1.25042 0.97050 0.94700 0.96818 1.69923 1.38849 1.22606 1.23116 0.86763 0.84519 0.78088 0.79852 1.20302 1.21430 1.18941 0.92759 0.92857 0.92596 0.90088 0.92892 0.92817 0.92838 0.91498 0.91367 0.91909 0.92050 0.92632 0.92777 0.92675 0.91214 0.91760 0.93712 0.93751 0.91787 0.91794 0.92797 0.92783 0.96599 0.97032 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.45 37.16 0.31 -1.05 16 2 C -0.09 -0.90 2.62 -90.62 -0.24 -1.13 16 3 C -0.15 -1.21 8.83 37.16 0.33 -0.88 16 4 C -0.08 -0.72 1.70 -90.62 -0.15 -0.88 16 5 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.12 -0.89 4.46 -26.73 -0.12 -1.01 16 7 C -0.12 -0.85 5.20 -26.73 -0.14 -0.99 16 8 C -0.09 -0.73 2.72 -90.62 -0.25 -0.98 16 9 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 10 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 11 C -0.14 -1.38 4.82 -26.74 -0.13 -1.51 16 12 C 0.09 1.04 1.81 -26.73 -0.05 0.99 16 13 H 0.06 0.65 6.23 -51.92 -0.32 0.32 16 14 O -0.38 -5.33 9.22 -35.23 -0.32 -5.65 16 15 C 0.06 0.93 5.75 37.16 0.21 1.14 16 16 C -0.12 -2.00 5.58 -26.73 -0.15 -2.15 16 17 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 18 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 19 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 20 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 21 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 23 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 27 H 0.05 0.53 6.58 -51.93 -0.34 0.19 16 28 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.08 0.96 7.52 -51.93 -0.39 0.57 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.39 6.84 -51.93 -0.36 0.03 16 34 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 35 H 0.07 0.47 6.70 -51.93 -0.35 0.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 41 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 42 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 43 H 0.04 0.62 8.09 -51.92 -0.42 0.20 16 44 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.39 7.20 -51.92 -0.37 0.01 16 50 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 51 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -30.56 380.44 -9.54 -40.10 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -10.35 Total: -4.56 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -0.71 Total: -25.50 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.32 Total: -5.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.56 -9.54 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385392845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.581 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds