Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 N 1.46899 * 109.47254 * 119.99912 * 2 1 3 5 5 C 1.46902 * 110.99869 * 274.99746 * 4 2 1 6 6 C 1.52998 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47260 * 300.00314 * 6 5 4 8 8 C 1.53000 * 109.47001 * 60.00262 * 6 5 4 9 9 C 1.53001 * 109.46979 * 180.02562 * 6 5 4 10 10 C 1.50704 * 109.46875 * 180.02562 * 9 6 5 11 11 H 1.07995 * 120.00148 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99808 * 180.02562 * 10 9 6 13 13 N 1.31516 * 120.00264 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00140 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47047 * 59.99952 * 14 12 10 16 16 H 1.48494 * 109.47497 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46928 * 300.00211 * 14 12 10 18 18 C 1.53006 * 109.47127 * 240.00046 * 2 1 3 19 19 C 1.53112 * 109.52104 * 179.87389 * 18 2 1 20 20 C 1.53048 * 109.27319 * 182.50237 * 19 18 2 21 21 N 1.46840 * 109.57592 * 59.08379 * 20 19 18 22 22 C 1.46902 * 111.00039 * 174.19360 * 21 20 19 23 23 C 1.46850 * 111.19681 * 298.29076 * 21 20 19 24 24 C 1.53029 * 109.52255 * 61.74243 * 23 21 20 25 25 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 26 26 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 28 28 H 1.00903 * 110.99887 * 151.04762 * 4 2 1 29 29 H 1.08993 * 109.47122 * 300.00280 * 5 4 2 30 30 H 1.09003 * 109.47035 * 60.00136 * 5 4 2 31 31 H 1.08996 * 109.46875 * 60.00232 * 7 6 5 32 32 H 1.08999 * 109.47113 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47047 * 299.99878 * 7 6 5 34 34 H 1.09005 * 109.47382 * 59.99959 * 8 6 5 35 35 H 1.08999 * 109.47115 * 179.97438 * 8 6 5 36 36 H 1.08996 * 109.47538 * 300.00015 * 8 6 5 37 37 H 1.09005 * 109.47027 * 299.99810 * 9 6 5 38 38 H 1.08995 * 109.47569 * 60.00355 * 9 6 5 39 39 H 0.96996 * 120.00082 * 180.02562 * 13 12 10 40 40 H 1.09004 * 109.51986 * 299.99617 * 18 2 1 41 41 H 1.08996 * 109.50857 * 302.37585 * 19 18 2 42 42 H 1.08995 * 109.51130 * 62.49943 * 19 18 2 43 43 H 1.08999 * 109.40834 * 299.06374 * 20 19 18 44 44 H 1.09001 * 109.45676 * 179.12397 * 20 19 18 45 45 H 1.09003 * 109.46790 * 184.20405 * 22 21 20 46 46 H 1.08998 * 109.47353 * 304.20933 * 22 21 20 47 47 H 1.09000 * 109.46957 * 64.20790 * 22 21 20 48 48 H 1.09001 * 109.46089 * 301.72464 * 23 21 20 49 49 H 1.09004 * 109.46445 * 181.75954 * 23 21 20 50 50 H 1.09010 * 109.50481 * 180.88053 * 24 23 21 51 51 H 1.09001 * 109.50537 * 60.76458 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2227 2.3468 6 6 2.5951 -0.5330 3.5744 7 6 1.6452 -1.6888 3.8952 8 6 3.9922 -1.0861 3.2862 9 6 2.6600 0.4200 4.7696 10 6 3.1655 -0.3243 5.9786 11 1 3.4158 -1.3720 5.9021 12 6 3.3083 0.3325 7.1825 13 7 3.0038 1.6085 7.2757 14 14 3.9355 -0.5898 8.6810 15 1 5.2923 -1.1246 8.4009 16 1 3.9984 0.3351 9.8410 17 1 3.0152 -1.7129 8.9919 18 6 2.0400 -0.7213 -1.2493 19 6 3.5711 -0.7192 -1.2520 20 6 4.0749 -1.3865 -2.5340 21 7 3.5632 -0.6579 -3.7017 22 6 4.1378 -1.1873 -4.9457 23 6 2.0957 -0.6881 -3.7451 24 6 1.5329 0.0014 -2.5003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9173 -1.1204 1.0287 29 1 2.7588 1.0462 2.1181 30 1 1.0871 0.6164 2.5525 31 1 1.5987 -2.3678 3.0439 32 1 2.0107 -2.2274 4.7695 33 1 0.6499 -1.2947 4.1006 34 1 4.6690 -0.2628 3.0576 35 1 4.3576 -1.6242 4.1609 36 1 3.9457 -1.7651 2.4348 37 1 3.3365 1.2436 4.5413 38 1 1.6645 0.8137 4.9749 39 1 3.1047 2.0706 8.1225 40 1 1.6771 -1.7491 -1.2501 41 1 3.9338 0.3078 -1.2108 42 1 3.9375 -1.2700 -0.3858 43 1 3.7244 -2.4180 -2.5672 44 1 5.1648 -1.3727 -2.5463 45 1 3.8004 -0.5828 -5.7877 46 1 5.2256 -1.1534 -4.8868 47 1 3.8134 -2.2184 -5.0858 48 1 1.7544 -1.7229 -3.7728 49 1 1.7479 -0.1673 -4.6373 50 1 0.4437 -0.0350 -2.5252 51 1 1.8624 1.0402 -2.4793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396473831.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -26.393370 kcal Electronic energy + Delta-G solvation = -23527.724709 eV Core-core repulsion = 20460.579186 eV Total energy + Delta-G solvation = -3067.145523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.67140 -37.69958 -35.80212 -32.92838 -31.91762 -31.24395 -29.36035 -26.84874 -26.80710 -26.26517 -25.19605 -23.41627 -23.11418 -22.15990 -20.42231 -19.80307 -17.83853 -16.35841 -16.09538 -15.65928 -15.32639 -14.84715 -14.66204 -14.32931 -14.14323 -13.92448 -13.58230 -13.16776 -13.02677 -12.73630 -12.55295 -12.51821 -12.04633 -11.98312 -11.95952 -11.76197 -11.56368 -11.36595 -11.29824 -10.94710 -10.85529 -10.76733 -10.55240 -10.49970 -10.44157 -10.25569 -10.13032 -10.03801 -9.63303 -8.96480 -8.78754 -8.59218 -8.28539 -7.98914 -5.93195 -3.93254 3.36481 3.41050 3.43273 3.67608 4.37658 4.52327 4.57282 4.61338 4.76395 4.93425 5.07952 5.09506 5.21537 5.27763 5.36989 5.42409 5.43536 5.49638 5.55770 5.59942 5.62698 5.72513 5.75010 5.80810 5.87973 5.90998 5.92663 6.01645 6.10119 6.12888 6.27297 6.34609 6.40221 6.44469 6.58337 6.70877 6.80514 6.82961 6.84382 6.86954 7.25239 7.29838 7.31069 7.50769 7.73304 7.79852 7.90515 8.07361 8.51933 9.12033 9.69281 11.18482 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.003129 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.746871 B = 8947.300283 C = 9364.546986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.040 0.960 4 N -0.684 5.684 5 C 0.071 3.929 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.058 0.942 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.278 1.278 18 C -0.088 4.088 19 C -0.117 4.117 20 C 0.058 3.942 21 N -0.544 5.544 22 C 0.025 3.975 23 C 0.056 3.944 24 C -0.111 4.111 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.337 0.663 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -5.124 -22.834 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.058 0.942 4 N -0.318 5.318 5 C -0.058 4.058 6 C -0.059 4.059 7 C -0.172 4.172 8 C -0.186 4.186 9 C -0.003 4.003 10 C -0.545 4.545 11 H 0.076 0.924 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.107 4.107 19 C -0.155 4.155 20 C -0.070 4.070 21 N -0.269 5.269 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.689 -4.739 -22.490 23.046 hybrid contribution 0.901 -0.647 0.639 1.280 sum -0.788 -5.385 -21.851 22.518 Atomic orbital electron populations 1.21820 0.94951 1.01995 1.00939 1.21496 0.95719 0.95755 0.89227 0.94199 1.60672 1.33509 1.33722 1.03924 1.22126 1.00037 0.93166 0.90434 1.20621 0.94086 0.96654 0.94492 1.21587 0.98208 0.97514 0.99907 1.21763 0.96997 0.99588 1.00204 1.19115 0.96897 0.93562 0.90759 1.21208 1.42837 0.96279 0.94171 0.92374 1.25015 0.95910 0.94834 0.98838 1.69956 1.49224 1.08979 1.25641 0.86731 0.79402 0.79642 0.82652 1.20377 1.21459 1.20329 1.21350 0.94974 1.00143 0.94236 1.21701 0.95520 1.01838 0.96462 1.22073 0.99705 0.94973 0.90242 1.61926 1.07129 1.55238 1.02601 1.22346 1.00275 0.97624 0.92079 1.22100 0.87168 0.98995 0.98892 1.21668 1.00003 1.00185 0.93040 0.92951 0.92310 0.92682 0.84114 0.96035 0.91695 0.93941 0.92813 0.94241 0.94132 0.91778 0.94948 0.96973 0.96730 0.93132 0.90803 0.91103 0.91112 0.94909 0.90806 0.91463 0.91417 0.95840 0.95009 0.90944 0.91021 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.07 37.16 0.34 -1.31 16 2 C 0.09 1.09 2.23 -67.71 -0.15 0.94 16 3 H 0.04 0.54 7.80 -51.93 -0.40 0.13 16 4 N -0.68 -9.95 5.52 -106.72 -0.59 -10.54 16 5 C 0.07 1.25 4.44 -3.82 -0.02 1.23 16 6 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 7 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 8 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 9 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 10 C -0.51 -13.98 7.65 -34.44 -0.26 -14.25 16 11 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.09 -0.92 1.97 -90.50 -0.18 -1.10 16 19 C -0.12 -1.22 5.09 -26.65 -0.14 -1.35 16 20 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 21 N -0.54 -5.13 4.91 -242.96 -1.19 -6.32 16 22 C 0.03 0.19 9.59 60.07 0.58 0.76 16 23 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 24 C -0.11 -1.02 4.95 -26.66 -0.13 -1.15 16 25 H 0.05 0.52 6.49 -51.93 -0.34 0.18 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.72 7.45 -51.93 -0.39 0.33 16 28 H 0.34 4.73 4.26 -39.29 -0.17 4.56 16 29 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.06 1.19 7.44 -51.93 -0.39 0.81 16 31 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 36 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 50 H 0.07 0.60 6.58 -51.92 -0.34 0.26 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -29.16 374.36 -10.10 -39.27 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.96 Total: -0.08 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 0.28 Total: -18.34 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -1.05 Total: -43.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.16 -10.10 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396473831.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.873 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds