Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.52998 * 109.47146 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47175 * 300.00018 * 6 5 4 8 8 C 1.53003 * 109.47029 * 60.00156 * 6 5 4 9 9 C 1.52999 * 109.47130 * 179.97438 * 6 5 4 10 10 C 1.50707 * 109.46997 * 179.97438 * 9 6 5 11 11 H 1.07994 * 119.99888 * 0.02562 * 10 9 6 12 12 C 1.37879 * 119.99711 * 180.02562 * 10 9 6 13 13 N 1.31513 * 119.99744 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00103 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.46693 * 90.00224 * 14 12 10 16 16 H 1.48497 * 109.46894 * 209.99773 * 14 12 10 17 17 H 1.48501 * 109.47142 * 330.00104 * 14 12 10 18 18 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 19 19 C 1.53122 * 109.52113 * 59.68450 * 18 2 1 20 20 C 1.53037 * 109.27778 * 182.44450 * 19 18 2 21 21 N 1.46849 * 109.52602 * 59.17797 * 20 19 18 22 22 C 1.46907 * 110.99746 * 174.16211 * 21 20 19 23 23 C 1.46845 * 111.19450 * 298.25809 * 21 20 19 24 24 C 1.53034 * 109.52532 * 61.74228 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 31 31 H 1.08996 * 109.47410 * 60.00084 * 7 6 5 32 32 H 1.08997 * 109.47481 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47105 * 299.99708 * 7 6 5 34 34 H 1.08996 * 109.47498 * 59.99876 * 8 6 5 35 35 H 1.08997 * 109.46942 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.47312 * 299.99584 * 8 6 5 37 37 H 1.08996 * 109.47321 * 300.00077 * 9 6 5 38 38 H 1.08998 * 109.46986 * 60.00393 * 9 6 5 39 39 H 0.97000 * 119.99885 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.52886 * 179.87402 * 18 2 1 41 41 H 1.08997 * 109.50373 * 302.37908 * 19 18 2 42 42 H 1.09000 * 109.50828 * 62.50211 * 19 18 2 43 43 H 1.08999 * 109.46107 * 299.15637 * 20 19 18 44 44 H 1.09002 * 109.46143 * 179.19621 * 20 19 18 45 45 H 1.08999 * 109.46465 * 184.21154 * 22 21 20 46 46 H 1.08999 * 109.46993 * 304.20410 * 22 21 20 47 47 H 1.08998 * 109.47283 * 64.21241 * 22 21 20 48 48 H 1.09003 * 109.46312 * 301.72546 * 23 21 20 49 49 H 1.09004 * 109.46079 * 181.76024 * 23 21 20 50 50 H 1.08999 * 109.50478 * 180.87757 * 24 23 21 51 51 H 1.09000 * 109.53631 * 60.78008 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 6 3.9921 -1.0860 -3.2863 8 6 1.6452 -1.6887 -3.8954 9 6 2.6599 0.4201 -4.7697 10 6 3.1654 -0.3242 -5.9788 11 1 3.4150 -1.3721 -5.9024 12 6 3.3091 0.3329 -7.1824 13 7 3.7498 -0.3167 -8.2376 14 14 2.8780 2.1457 -7.3142 15 1 4.0790 2.9636 -7.0078 16 1 2.4138 2.4450 -8.6926 17 1 1.7986 2.4694 -6.3470 18 6 2.0400 -0.7212 1.2491 19 6 1.5238 -2.1628 1.2543 20 6 1.9864 -2.8605 2.5354 21 7 1.4725 -2.1335 3.7032 22 6 1.7801 -2.8514 4.9474 23 6 1.9927 -0.7609 3.7451 24 6 1.5303 -0.0005 2.5002 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.9173 -1.1204 -1.0288 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.9456 -1.7651 -2.4350 32 1 4.3572 -1.6248 -4.1607 33 1 4.6688 -0.2627 -3.0578 34 1 0.6499 -1.2947 -4.1007 35 1 2.0106 -2.2273 -4.7696 36 1 1.5986 -2.3678 -3.0440 37 1 1.6644 0.8137 -4.9749 38 1 3.3364 1.2436 -4.5414 39 1 3.8513 0.1457 -9.0842 40 1 3.1301 -0.7237 1.2489 41 1 0.4346 -2.1594 1.2148 42 1 1.9183 -2.6938 0.3879 43 1 3.0758 -2.8759 2.5675 44 1 1.6085 -3.8829 2.5488 45 1 1.3243 -2.3306 5.7895 46 1 1.3836 -3.8651 4.8896 47 1 2.8605 -2.8911 5.0864 48 1 3.0821 -0.7860 3.7716 49 1 1.6193 -0.2582 4.6374 50 1 1.9295 1.0135 2.5240 51 1 0.4412 0.0376 2.4799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396473832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -21.780071 kcal Electronic energy + Delta-G solvation = -23560.621273 eV Core-core repulsion = 20493.675798 eV Total energy + Delta-G solvation = -3066.945475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.72034 -37.79233 -35.90847 -32.96370 -31.92925 -31.03370 -29.41975 -27.48939 -26.80256 -26.31100 -25.25430 -23.56217 -23.23277 -21.88405 -20.76296 -19.11021 -17.83102 -16.78076 -16.13457 -15.58972 -15.26034 -15.00517 -14.83870 -14.62459 -14.03850 -13.80326 -13.56575 -13.38192 -12.99135 -12.64008 -12.61161 -12.57740 -12.32078 -12.15481 -11.95396 -11.81254 -11.70678 -11.52669 -11.07057 -10.95490 -10.94171 -10.80315 -10.56545 -10.48901 -10.46010 -10.26740 -10.17603 -9.77295 -9.64168 -9.23034 -8.86584 -8.58858 -8.47727 -8.07654 -5.98102 -3.93943 3.33270 3.41104 3.45058 3.68948 4.30718 4.50113 4.57113 4.65139 4.73754 4.97534 5.05005 5.12947 5.15643 5.29062 5.34286 5.35325 5.38568 5.50228 5.55221 5.56969 5.62922 5.65682 5.67903 5.75490 5.85045 5.89722 5.91886 5.95745 6.08940 6.19066 6.23630 6.23731 6.32252 6.44307 6.52759 6.63159 6.73398 6.81845 6.83865 6.84650 7.11993 7.17846 7.23243 7.36709 7.39675 7.50570 7.71385 7.88079 8.62211 9.08117 9.65277 11.15083 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.003150 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.953800 B = 8885.962690 C = 9207.842590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.037 0.963 4 N -0.679 5.679 5 C 0.069 3.931 6 C -0.048 4.048 7 C -0.130 4.130 8 C -0.116 4.116 9 C -0.005 4.005 10 C -0.506 4.506 11 H 0.078 0.922 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.875 3.125 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.088 4.088 19 C -0.106 4.106 20 C 0.053 3.947 21 N -0.543 5.543 22 C 0.025 3.975 23 C 0.057 3.943 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.007 0.993 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.022 0.978 48 H 0.030 0.970 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 -1.850 25.092 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.055 0.945 4 N -0.311 5.311 5 C -0.060 4.060 6 C -0.048 4.048 7 C -0.187 4.187 8 C -0.173 4.173 9 C -0.043 4.043 10 C -0.544 4.544 11 H 0.096 0.904 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.703 3.297 15 H -0.206 1.206 16 H -0.216 1.216 17 H -0.191 1.191 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.075 4.075 21 N -0.268 5.268 22 C -0.124 4.124 23 C -0.071 4.071 24 C -0.151 4.151 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.312 -2.048 24.689 25.337 hybrid contribution 1.583 1.612 0.072 2.261 sum -3.729 -0.435 24.762 25.045 Atomic orbital electron populations 1.21874 0.94771 1.02403 1.00728 1.21478 0.96104 0.95364 0.89238 0.94490 1.60611 1.33229 1.33486 1.03803 1.22160 0.99947 0.93207 0.90715 1.20404 0.94687 0.96322 0.93430 1.21771 0.96507 0.99696 1.00736 1.21594 0.97903 0.97418 1.00417 1.19632 0.96277 0.94668 0.93681 1.21145 1.42633 0.98284 0.92291 0.90430 1.25021 0.94958 0.97751 0.95910 1.69910 1.47353 1.36438 1.00906 0.86849 0.79215 0.86459 0.77153 1.20558 1.21569 1.19121 1.21345 0.99333 0.95879 0.94124 1.21612 1.02223 0.94509 0.95975 1.22178 0.97018 0.97633 0.90637 1.61941 1.59783 1.02413 1.02629 1.22348 0.98670 0.99200 0.92145 1.22078 0.96976 0.89241 0.98809 1.21691 1.02272 0.97974 0.93148 0.92901 0.91676 0.92996 0.84282 0.91664 0.96178 0.94618 0.91246 0.94278 0.94294 0.92280 0.93632 0.96747 0.97495 0.92922 0.92011 0.90559 0.90398 0.95241 0.90880 0.91534 0.91409 0.95908 0.95201 0.91004 0.91767 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.71 37.16 0.32 -1.26 16 2 C 0.09 1.02 2.45 -67.71 -0.17 0.85 16 3 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 4 N -0.68 -9.16 4.85 -106.73 -0.52 -9.68 16 5 C 0.07 1.12 4.44 -3.83 -0.02 1.10 16 6 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 7 C -0.13 -2.38 7.89 37.15 0.29 -2.09 16 8 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 9 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 10 C -0.51 -14.02 8.21 -34.44 -0.28 -14.30 16 11 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 12 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 13 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 14 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 18 C -0.09 -0.87 1.94 -90.50 -0.18 -1.04 16 19 C -0.11 -1.05 4.89 -26.65 -0.13 -1.18 16 20 C 0.05 0.49 5.46 -3.83 -0.02 0.47 16 21 N -0.54 -4.95 4.91 -242.95 -1.19 -6.14 16 22 C 0.02 0.18 9.59 60.07 0.58 0.76 16 23 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 24 C -0.11 -1.00 5.09 -26.65 -0.14 -1.13 16 25 H 0.05 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 27 H 0.05 0.64 7.45 -51.93 -0.39 0.26 16 28 H 0.34 4.45 6.25 -39.29 -0.25 4.21 16 29 H 0.06 1.10 7.44 -51.93 -0.39 0.72 16 30 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 31 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.08 0.82 6.31 -51.93 -0.33 0.49 16 42 H 0.08 0.83 7.59 -51.93 -0.39 0.44 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.72 6.31 -51.93 -0.33 0.40 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -29.25 369.12 -9.64 -38.89 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.86 Total: 0.00 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 0.27 Total: -18.74 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.94 Total: -42.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.25 -9.64 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396473832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.113 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds