Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99617 * 2 1 4 4 C 1.53006 * 109.47304 * 293.95138 * 3 2 1 5 5 H 1.08997 * 109.46536 * 60.00124 * 4 3 2 6 6 O 1.42903 * 109.46908 * 300.00723 * 4 3 2 7 7 C 1.52998 * 109.47098 * 180.02562 * 4 3 2 8 8 N 1.46897 * 109.46917 * 182.82820 * 7 4 3 9 9 C 1.46850 * 111.00245 * 75.79351 * 8 7 4 10 10 C 1.53035 * 109.51923 * 185.83260 * 9 8 7 11 11 C 1.53119 * 109.27780 * 300.83232 * 10 9 8 12 12 C 1.50699 * 109.52195 * 177.61890 * 11 10 9 13 13 H 1.08002 * 120.00294 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00101 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47080 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46916 * 120.00599 * 16 14 12 19 19 H 1.48507 * 109.47085 * 240.00535 * 16 14 12 20 20 C 1.53121 * 109.16362 * 57.65032 * 11 10 9 21 21 C 1.46822 * 110.98651 * 200.00907 * 8 7 4 22 22 C 1.46893 * 110.99859 * 123.95098 * 2 1 3 23 23 C 1.53006 * 117.49731 * 124.66836 * 22 2 1 24 24 C 1.53002 * 60.00122 * 252.50615 * 23 22 2 25 25 H 1.09004 * 109.47277 * 60.00132 * 1 2 3 26 26 H 1.09005 * 109.47384 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47317 * 300.00312 * 1 2 3 28 28 H 1.09006 * 109.47059 * 173.95485 * 3 2 1 29 29 H 1.09003 * 109.47544 * 53.95484 * 3 2 1 30 30 H 0.96701 * 113.99683 * 299.99321 * 6 4 3 31 31 H 1.08998 * 109.47072 * 62.82831 * 7 4 3 32 32 H 1.08996 * 109.47313 * 302.82542 * 7 4 3 33 33 H 1.09008 * 109.45729 * 65.82239 * 9 8 7 34 34 H 1.08997 * 109.46244 * 305.84915 * 9 8 7 35 35 H 1.09006 * 109.50228 * 60.76740 * 10 9 8 36 36 H 1.08999 * 109.50555 * 180.84917 * 10 9 8 37 37 H 1.09001 * 109.52347 * 297.74289 * 11 10 9 38 38 H 0.97000 * 120.00159 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.49855 * 62.28906 * 20 11 10 40 40 H 1.09002 * 109.50026 * 182.40213 * 20 11 10 41 41 H 1.08997 * 109.46464 * 54.14175 * 21 8 7 42 42 H 1.08996 * 109.46113 * 294.16555 * 21 8 7 43 43 H 1.09005 * 115.55396 * 270.37631 * 22 2 1 44 44 H 1.08999 * 117.49885 * 359.97438 * 23 22 2 45 45 H 1.08997 * 117.49661 * 145.02051 * 23 22 2 46 46 H 1.08994 * 117.50430 * 252.50946 * 24 23 22 47 47 H 1.09004 * 117.49469 * 107.48667 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 1 0.5471 2.0844 -1.4265 6 8 2.2008 1.3286 -2.4076 7 6 2.1802 3.4856 -1.3185 8 7 1.7730 4.1664 -2.5549 9 6 0.3588 4.5579 -2.4990 10 6 -0.0671 5.1308 -3.8527 11 6 0.8054 6.3444 -4.1851 12 6 0.4298 6.8776 -5.5437 13 1 -0.3531 6.3997 -6.1139 14 6 1.0850 7.9762 -6.0584 15 7 2.0381 8.5584 -5.3638 16 14 0.6190 8.6375 -7.7421 17 1 -0.4747 7.8112 -8.3131 18 1 0.1602 10.0439 -7.6118 19 1 1.8010 8.5836 -8.6396 20 6 2.2765 5.9198 -4.1894 21 6 2.6344 5.3241 -2.8259 22 6 1.9954 -0.7659 1.1376 23 6 2.9693 -1.9057 0.8318 24 6 1.5410 -2.2198 1.2813 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.0797 1.3445 0.1082 29 1 1.5610 1.9274 0.8309 30 1 3.1651 1.2641 -2.3763 31 1 3.2682 3.4568 -1.2610 32 1 1.7851 4.0268 -0.4589 33 1 0.2216 5.3136 -1.7255 34 1 -0.2508 3.6849 -2.2661 35 1 0.0569 4.3711 -4.6246 36 1 -1.1127 5.4352 -3.8064 37 1 0.6522 7.1197 -3.4345 38 1 2.4988 9.3315 -5.7257 39 1 2.4373 5.1726 -4.9665 40 1 2.9054 6.7887 -4.3834 41 1 3.6774 5.0077 -2.8303 42 1 2.4863 6.0762 -2.0509 43 1 2.1579 -0.1966 2.0528 44 1 3.2190 -2.0874 -0.2135 45 1 3.7728 -2.0863 1.5458 46 1 1.4047 -2.6071 2.2910 47 1 0.8513 -2.6080 0.5317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397221039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -20.642017 kcal Electronic energy + Delta-G solvation = -22941.867669 eV Core-core repulsion = 19739.138449 eV Total energy + Delta-G solvation = -3202.729220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.22282 -38.22747 -36.67323 -34.09815 -33.71733 -31.45161 -29.93435 -29.24836 -26.98096 -25.64405 -23.79863 -22.51238 -22.28699 -21.47470 -20.75887 -20.51666 -18.53117 -16.97659 -16.35336 -16.25066 -15.65734 -15.27467 -15.00509 -14.60163 -14.33344 -14.04331 -13.85793 -13.49307 -13.15603 -12.94042 -12.57485 -12.36068 -12.26939 -12.02431 -11.69864 -11.57181 -11.48144 -11.24209 -10.94270 -10.89443 -10.78639 -10.65372 -10.42404 -10.40832 -10.15370 -9.97351 -9.66578 -9.38734 -8.89173 -8.65817 -8.46972 -8.25528 -7.66385 -5.93635 -3.98386 3.33149 3.41092 3.45430 3.45785 3.51943 4.34350 4.48944 4.61199 4.66459 4.72518 4.87943 4.92419 4.99378 5.14813 5.30415 5.35062 5.36857 5.40149 5.41466 5.48960 5.51335 5.68264 5.72498 5.81670 5.81680 5.91010 5.93985 6.12637 6.13547 6.23584 6.37950 6.63091 6.67811 6.79448 6.89785 6.91585 7.13839 7.22218 7.48107 7.66638 7.72241 7.87904 8.00012 8.10219 8.20312 8.53184 9.05570 9.65820 11.12681 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.002928 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.792669 B = 9559.545137 C = 9727.336024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.502 5.502 3 C 0.026 3.974 4 C 0.121 3.879 5 H 0.095 0.905 6 O -0.532 6.532 7 C 0.022 3.978 8 N -0.523 5.523 9 C 0.061 3.939 10 C -0.106 4.106 11 C 0.048 3.952 12 C -0.507 4.507 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.104 4.104 21 C 0.059 3.941 22 C 0.001 3.999 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.366 0.634 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -16.807 14.723 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.225 5.225 3 C -0.103 4.103 4 C 0.060 3.940 5 H 0.112 0.888 6 O -0.335 6.335 7 C -0.107 4.107 8 N -0.247 5.247 9 C -0.067 4.067 10 C -0.143 4.143 11 C 0.029 3.971 12 C -0.546 4.546 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.142 4.142 21 C -0.068 4.068 22 C -0.108 4.108 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.212 0.788 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.062 -17.250 13.705 22.058 hybrid contribution 0.036 1.556 0.880 1.788 sum 1.098 -15.694 14.585 21.453 Atomic orbital electron populations 1.22433 0.87089 1.02151 1.00777 1.61679 1.07792 1.13212 1.39858 1.22881 1.00658 0.88439 0.98309 1.21840 0.98751 0.88626 0.84774 0.88760 1.86637 1.24526 1.75736 1.46606 1.22767 1.00329 0.95294 0.92356 1.61866 1.03364 1.27415 1.32089 1.22149 0.88369 0.97373 0.98782 1.21664 0.98917 0.99447 0.94309 1.18685 0.90875 0.91156 0.96375 1.21259 1.18749 1.12209 1.02337 0.92698 1.24975 0.95131 0.96663 0.97345 1.69889 1.24067 1.21832 1.37492 0.86578 0.78381 0.78672 0.84614 1.19818 1.21202 1.21080 1.21654 1.00913 0.99725 0.91893 1.22284 0.94963 0.89769 0.99823 1.22451 1.04794 0.89769 0.93737 1.23067 0.92519 1.01619 1.02842 1.23050 0.98735 0.97095 1.02468 0.90687 0.91364 0.95847 0.90422 0.94234 0.78828 0.91118 0.94837 0.96111 0.92651 0.92331 0.93336 0.96297 0.93218 0.93695 0.89023 0.92768 0.96230 0.89620 0.87965 0.88982 0.88878 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.18 60.07 0.55 0.78 16 2 N -0.50 -5.25 4.78 -234.87 -1.12 -6.37 16 3 C 0.03 0.27 4.58 -3.82 -0.02 0.25 16 4 C 0.12 1.52 2.92 -26.73 -0.08 1.44 16 5 H 0.09 1.30 5.17 -51.93 -0.27 1.03 16 6 O -0.53 -7.59 13.12 -35.23 -0.46 -8.05 16 7 C 0.02 0.31 4.65 -3.83 -0.02 0.29 16 8 N -0.52 -9.36 4.50 -234.70 -1.06 -10.42 16 9 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 10 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 11 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.17 8.56 -34.44 -0.29 -14.47 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 15 N -0.89 -25.72 11.37 55.43 0.63 -25.09 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.10 -2.49 5.12 -26.65 -0.14 -2.62 16 21 C 0.06 1.16 5.42 -3.85 -0.02 1.14 16 22 C 0.00 0.01 5.27 -67.71 -0.36 -0.34 16 23 C -0.16 -1.30 10.46 -26.73 -0.28 -1.58 16 24 C -0.18 -1.35 9.72 -26.73 -0.26 -1.61 16 25 H 0.07 0.81 6.47 -51.93 -0.34 0.48 16 26 H 0.07 0.61 6.76 -51.93 -0.35 0.26 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.37 4.14 9.04 45.56 0.41 4.55 16 31 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 33 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.06 0.92 6.68 -51.93 -0.35 0.57 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 41 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.80 7.25 -51.93 -0.38 0.42 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -29.88 361.61 -10.79 -40.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.85 Total: 2.71 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.37 Total: -15.48 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -1.55 Total: -41.88 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.46 Total: -8.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.88 -10.79 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.033 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds