Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99617 * 2 1 4 4 C 1.53006 * 109.47304 * 293.95138 * 3 2 1 5 5 H 1.08997 * 109.46536 * 60.00124 * 4 3 2 6 6 O 1.42903 * 109.46908 * 300.00723 * 4 3 2 7 7 C 1.52998 * 109.47098 * 180.02562 * 4 3 2 8 8 N 1.46897 * 109.46917 * 182.82820 * 7 4 3 9 9 C 1.46850 * 111.00245 * 75.79351 * 8 7 4 10 10 C 1.53035 * 109.51923 * 185.83260 * 9 8 7 11 11 C 1.53119 * 109.27780 * 300.83232 * 10 9 8 12 12 C 1.50699 * 109.52195 * 177.61890 * 11 10 9 13 13 H 1.08002 * 120.00294 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00101 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47080 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46916 * 120.00599 * 16 14 12 19 19 H 1.48507 * 109.47085 * 240.00535 * 16 14 12 20 20 C 1.53121 * 109.16362 * 57.65032 * 11 10 9 21 21 C 1.46822 * 110.98651 * 200.00907 * 8 7 4 22 22 C 1.46893 * 110.99859 * 123.95098 * 2 1 3 23 23 C 1.53006 * 117.49731 * 124.66836 * 22 2 1 24 24 C 1.53002 * 60.00122 * 252.50615 * 23 22 2 25 25 H 1.09004 * 109.47277 * 60.00132 * 1 2 3 26 26 H 1.09005 * 109.47384 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47317 * 300.00312 * 1 2 3 28 28 H 1.09006 * 109.47059 * 173.95485 * 3 2 1 29 29 H 1.09003 * 109.47544 * 53.95484 * 3 2 1 30 30 H 0.96701 * 113.99683 * 299.99321 * 6 4 3 31 31 H 1.08998 * 109.47072 * 62.82831 * 7 4 3 32 32 H 1.08996 * 109.47313 * 302.82542 * 7 4 3 33 33 H 1.09008 * 109.45729 * 65.82239 * 9 8 7 34 34 H 1.08997 * 109.46244 * 305.84915 * 9 8 7 35 35 H 1.09006 * 109.50228 * 60.76740 * 10 9 8 36 36 H 1.08999 * 109.50555 * 180.84917 * 10 9 8 37 37 H 1.09001 * 109.52347 * 297.74289 * 11 10 9 38 38 H 0.97000 * 120.00159 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.49855 * 62.28906 * 20 11 10 40 40 H 1.09002 * 109.50026 * 182.40213 * 20 11 10 41 41 H 1.08997 * 109.46464 * 54.14175 * 21 8 7 42 42 H 1.08996 * 109.46113 * 294.16555 * 21 8 7 43 43 H 1.09005 * 115.55396 * 270.37631 * 22 2 1 44 44 H 1.08999 * 117.49885 * 359.97438 * 23 22 2 45 45 H 1.08997 * 117.49661 * 145.02051 * 23 22 2 46 46 H 1.08994 * 117.50430 * 252.50946 * 24 23 22 47 47 H 1.09004 * 117.49469 * 107.48667 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 1 0.5471 2.0844 -1.4265 6 8 2.2008 1.3286 -2.4076 7 6 2.1802 3.4856 -1.3185 8 7 1.7730 4.1664 -2.5549 9 6 0.3588 4.5579 -2.4990 10 6 -0.0671 5.1308 -3.8527 11 6 0.8054 6.3444 -4.1851 12 6 0.4298 6.8776 -5.5437 13 1 -0.3531 6.3997 -6.1139 14 6 1.0850 7.9762 -6.0584 15 7 2.0381 8.5584 -5.3638 16 14 0.6190 8.6375 -7.7421 17 1 -0.4747 7.8112 -8.3131 18 1 0.1602 10.0439 -7.6118 19 1 1.8010 8.5836 -8.6396 20 6 2.2765 5.9198 -4.1894 21 6 2.6344 5.3241 -2.8259 22 6 1.9954 -0.7659 1.1376 23 6 2.9693 -1.9057 0.8318 24 6 1.5410 -2.2198 1.2813 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.0797 1.3445 0.1082 29 1 1.5610 1.9274 0.8309 30 1 3.1651 1.2641 -2.3763 31 1 3.2682 3.4568 -1.2610 32 1 1.7851 4.0268 -0.4589 33 1 0.2216 5.3136 -1.7255 34 1 -0.2508 3.6849 -2.2661 35 1 0.0569 4.3711 -4.6246 36 1 -1.1127 5.4352 -3.8064 37 1 0.6522 7.1197 -3.4345 38 1 2.4988 9.3315 -5.7257 39 1 2.4373 5.1726 -4.9665 40 1 2.9054 6.7887 -4.3834 41 1 3.6774 5.0077 -2.8303 42 1 2.4863 6.0762 -2.0509 43 1 2.1579 -0.1966 2.0528 44 1 3.2190 -2.0874 -0.2135 45 1 3.7728 -2.0863 1.5458 46 1 1.4047 -2.6071 2.2910 47 1 0.8513 -2.6080 0.5317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397221039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -41.821038 kcal Electronic energy + Delta-G solvation = -22942.786060 eV Core-core repulsion = 19739.138449 eV Total energy + Delta-G solvation = -3203.647611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29736 -39.38275 -37.78647 -35.54486 -34.84997 -33.26857 -31.55149 -30.51060 -28.19102 -27.06644 -25.14703 -23.86025 -23.14872 -23.00459 -21.88998 -21.24838 -20.33838 -18.46027 -17.79295 -17.25048 -16.68875 -16.62905 -16.15544 -16.07194 -15.57392 -15.19046 -14.96635 -14.85373 -14.43250 -14.35116 -14.07969 -13.90709 -13.60574 -13.05664 -12.85457 -12.76523 -12.75846 -12.64259 -12.46398 -12.20736 -12.17650 -11.99902 -11.87672 -11.74883 -11.44481 -11.33532 -11.08277 -10.86921 -10.67420 -10.60864 -10.35609 -9.21289 -9.08306 -8.08106 -6.21062 1.39550 1.41442 1.53075 2.43908 2.65065 2.88616 3.13904 3.18918 3.72687 3.87495 4.03458 4.08021 4.11605 4.15493 4.23098 4.27327 4.32392 4.40575 4.45988 4.51653 4.57748 4.65777 4.68877 4.74635 4.78808 4.81652 4.86649 4.90571 4.94865 5.01763 5.09428 5.12590 5.19020 5.23787 5.34639 5.36106 5.56873 5.63497 6.00415 6.02964 6.05223 6.19234 6.32116 6.36366 6.41889 6.90211 7.09402 7.46453 8.96716 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.002928 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.792669 B = 9559.545137 C = 9727.336024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.516 5.516 3 C 0.035 3.965 4 C 0.129 3.871 5 H 0.082 0.918 6 O -0.554 6.554 7 C 0.024 3.976 8 N -0.532 5.532 9 C 0.068 3.932 10 C -0.099 4.099 11 C 0.044 3.956 12 C -0.532 4.532 13 H 0.048 0.952 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.095 4.095 21 C 0.070 3.930 22 C -0.009 4.009 23 C -0.161 4.161 24 C -0.170 4.170 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.378 0.622 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.021 0.979 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.051 0.949 37 H -0.012 1.012 38 H 0.260 0.740 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.014 0.986 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -18.102 15.893 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.240 5.240 3 C -0.093 4.093 4 C 0.069 3.931 5 H 0.100 0.900 6 O -0.359 6.359 7 C -0.104 4.104 8 N -0.257 5.257 9 C -0.060 4.060 10 C -0.137 4.137 11 C 0.026 3.974 12 C -0.570 4.570 13 H 0.067 0.933 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.133 4.133 21 C -0.057 4.057 22 C -0.118 4.118 23 C -0.199 4.199 24 C -0.207 4.207 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.033 0.967 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.275 -18.562 14.889 23.830 hybrid contribution -0.028 1.934 0.516 2.002 sum 1.246 -16.628 15.405 22.702 Atomic orbital electron populations 1.22405 0.87083 1.02448 1.00396 1.61642 1.07985 1.13343 1.41011 1.22730 1.01303 0.88411 0.96897 1.21731 0.97861 0.87885 0.85646 0.90028 1.86602 1.25766 1.75968 1.47542 1.22852 1.01501 0.95492 0.90586 1.61795 1.02644 1.26318 1.34937 1.22039 0.89279 0.98177 0.96471 1.21522 0.98457 0.97597 0.96084 1.18656 0.92582 0.91772 0.94399 1.21609 1.18892 1.12860 1.03657 0.93341 1.25740 0.95059 0.96929 1.00944 1.70017 1.24676 1.22078 1.38975 0.85580 0.78206 0.78082 0.80231 1.19366 1.20557 1.20532 1.21410 0.99474 0.98242 0.94199 1.22044 0.96437 0.90398 0.96839 1.22527 1.05614 0.90140 0.93515 1.23092 0.93157 1.01096 1.02582 1.23101 0.98312 0.96110 1.03177 0.92003 0.90799 0.95221 0.89384 0.93497 0.77476 0.89478 0.93768 0.96047 0.90251 0.93481 0.93056 0.99342 0.93073 0.95329 0.92016 0.90689 0.96731 0.88903 0.89193 0.87456 0.87256 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.18 127.69 1.17 1.62 16 2 N -0.52 -9.78 4.78 -897.00 -4.28 -14.07 16 3 C 0.04 0.64 4.58 86.31 0.40 1.03 16 4 C 0.13 2.98 2.92 30.60 0.09 3.07 16 5 H 0.08 2.11 5.17 -2.39 -0.01 2.09 16 6 O -0.55 -14.86 13.12 -148.98 -1.95 -16.82 16 7 C 0.02 0.61 4.65 86.30 0.40 1.02 16 8 N -0.53 -18.33 4.50 -896.45 -4.03 -22.36 16 9 C 0.07 2.44 5.29 86.32 0.46 2.90 16 10 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 11 C 0.04 2.32 2.16 -11.46 -0.02 2.29 16 12 C -0.53 -30.48 8.56 25.60 0.22 -30.26 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 14 C 0.01 0.65 5.31 84.65 0.45 1.10 16 15 N -0.92 -53.95 11.37 21.45 0.24 -53.71 16 16 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 21 C 0.07 2.74 5.42 86.33 0.47 3.21 16 22 C -0.01 -0.15 5.27 44.92 0.24 0.09 16 23 C -0.16 -2.25 10.46 30.60 0.32 -1.93 16 24 C -0.17 -2.23 9.72 30.60 0.30 -1.94 16 25 H 0.06 1.28 6.47 -2.39 -0.02 1.26 16 26 H 0.07 1.23 6.76 -2.38 -0.02 1.21 16 27 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 1.42 8.08 -2.38 -0.02 1.40 16 29 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.38 7.84 9.04 -74.06 -0.67 7.17 16 31 H 0.09 1.94 7.79 -2.39 -0.02 1.92 16 32 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 33 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 2.49 6.68 -2.39 -0.02 2.47 16 35 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 3.39 6.18 -2.39 -0.01 3.37 16 41 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 1.32 8.08 -2.38 -0.02 1.30 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.09 1.34 7.25 -2.38 -0.02 1.33 16 Total: -1.00 -64.75 361.61 -2.94 -67.69 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.26 Total: 18.91 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.80 Total: -26.45 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -8.07 Total: -90.14 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.95 Total: -16.82 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.75 -2.94 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.871 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds