Wall clock time and date at job start Tue Mar 31 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 110.99855 * 2 1 4 4 C 1.53006 * 109.47230 * 199.77565 * 3 2 1 5 5 H 1.09001 * 109.46542 * 299.92312 * 4 3 2 6 6 O 1.42898 * 109.47279 * 59.92213 * 4 3 2 7 7 C 1.52994 * 109.47123 * 179.97438 * 4 3 2 8 8 N 1.46903 * 109.47179 * 179.11999 * 7 4 3 9 9 C 1.46844 * 111.00177 * 169.72457 * 8 7 4 10 10 C 1.53037 * 109.52066 * 185.83454 * 9 8 7 11 11 C 1.53122 * 109.28269 * 300.81906 * 10 9 8 12 12 C 1.50695 * 109.57690 * 177.59387 * 11 10 9 13 13 H 1.08003 * 119.99891 * 240.29027 * 12 11 10 14 14 C 1.37879 * 120.00048 * 60.28491 * 12 11 10 15 15 N 1.31515 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99757 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47128 * 59.99837 * 16 14 12 18 18 H 1.48503 * 109.46697 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46796 * 299.99690 * 16 14 12 20 20 C 1.53119 * 109.15668 * 57.65680 * 11 10 9 21 21 C 1.46854 * 110.99370 * 293.93477 * 8 7 4 22 22 C 1.46900 * 111.00263 * 123.94932 * 2 1 3 23 23 C 1.53004 * 117.49894 * 124.79478 * 22 2 1 24 24 C 1.53002 * 117.49906 * 56.13653 * 22 2 1 25 25 H 1.09000 * 109.47239 * 62.33243 * 1 2 3 26 26 H 1.09006 * 109.46943 * 182.33377 * 1 2 3 27 27 H 1.08996 * 109.47493 * 302.32594 * 1 2 3 28 28 H 1.09003 * 109.47459 * 79.77411 * 3 2 1 29 29 H 1.09004 * 109.47031 * 319.76993 * 3 2 1 30 30 H 0.96698 * 113.99992 * 60.00212 * 6 4 3 31 31 H 1.09004 * 109.47175 * 299.11560 * 7 4 3 32 32 H 1.08998 * 109.47672 * 59.11592 * 7 4 3 33 33 H 1.09000 * 109.46489 * 305.84972 * 9 8 7 34 34 H 1.09008 * 109.46298 * 65.81878 * 9 8 7 35 35 H 1.09007 * 109.50108 * 180.88089 * 10 9 8 36 36 H 1.08998 * 109.53622 * 60.78814 * 10 9 8 37 37 H 1.08999 * 109.51976 * 297.75359 * 11 10 9 38 38 H 0.97000 * 119.99931 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.50169 * 182.41058 * 20 11 10 40 40 H 1.08999 * 109.53566 * 62.30507 * 20 11 10 41 41 H 1.08998 * 109.45970 * 294.17321 * 21 8 7 42 42 H 1.08992 * 109.46343 * 54.15740 * 21 8 7 43 43 H 1.09003 * 115.55506 * 270.46897 * 22 2 1 44 44 H 1.08994 * 117.49717 * 0.02562 * 23 22 2 45 45 H 1.09007 * 117.49741 * 145.02276 * 23 22 2 46 46 H 1.08996 * 117.50262 * 214.98492 * 24 22 2 47 47 H 1.09001 * 117.49512 * 359.97242 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.4454 1.3612 -0.4881 5 1 4.0480 0.7419 0.1764 6 8 3.4983 0.8291 -1.8132 7 6 3.9934 2.7896 -0.4887 8 7 5.3923 2.7772 -0.9372 9 6 5.8778 4.1409 -1.1842 10 6 7.2836 4.0820 -1.7862 11 6 8.2190 3.3550 -0.8160 12 6 9.5915 3.2412 -1.4278 13 1 10.0263 2.2679 -1.6014 14 6 10.2922 4.3795 -1.7660 15 7 9.7629 5.5646 -1.5542 16 14 11.9932 4.2382 -2.5250 17 1 11.9056 3.4792 -3.7983 18 1 12.5297 5.5966 -2.7937 19 1 12.8968 3.5266 -1.5856 20 6 7.6650 1.9550 -0.5378 21 6 6.2481 2.0755 0.0280 22 6 1.9954 -0.7659 1.1376 23 6 2.9716 -1.9037 0.8321 24 6 1.5426 -2.2204 1.2802 25 1 -0.3634 0.4772 -0.9101 26 1 -0.3633 -1.0269 0.0418 27 1 -0.3634 0.5495 0.8683 28 1 1.9552 1.7761 1.0113 29 1 1.3930 1.9918 -0.6638 30 1 2.9833 1.3313 -2.4595 31 1 3.4006 3.4059 -1.1646 32 1 3.9388 3.2002 0.5195 33 1 5.2062 4.6454 -1.8788 34 1 5.9081 4.6915 -0.2439 35 1 7.6499 5.0947 -1.9549 36 1 7.2522 3.5439 -2.7335 37 1 8.2815 3.9142 0.1175 38 1 10.2557 6.3655 -1.7925 39 1 8.3037 1.4480 0.1854 40 1 7.6391 1.3824 -1.4650 41 1 6.2767 2.6358 0.9625 42 1 5.8455 1.0798 0.2137 43 1 2.1564 -0.1969 2.0533 44 1 3.2235 -2.0837 -0.2130 45 1 3.7747 -2.0835 1.5469 46 1 1.4061 -2.6084 2.2896 47 1 0.8537 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397221041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:42 Heat of formation + Delta-G solvation = -20.023057 kcal Electronic energy + Delta-G solvation = -23175.830593 eV Core-core repulsion = 19973.128213 eV Total energy + Delta-G solvation = -3202.702380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.22110 -38.17879 -36.50761 -34.10166 -33.69046 -31.46042 -30.02461 -29.37652 -26.82913 -25.28292 -23.81863 -22.54004 -22.38286 -21.57035 -20.69911 -20.41238 -18.52038 -16.93628 -16.34963 -16.04671 -15.65028 -15.06230 -14.95006 -14.88919 -14.40908 -13.97049 -13.75618 -13.35333 -13.08869 -12.90533 -12.55278 -12.32981 -12.28212 -12.04181 -11.93252 -11.49115 -11.44738 -11.26546 -10.89523 -10.76945 -10.72932 -10.48982 -10.44720 -10.37413 -10.13673 -9.97349 -9.64929 -9.36297 -8.85584 -8.65888 -8.44997 -8.23741 -7.64388 -5.92235 -3.97130 3.36740 3.40670 3.44161 3.49036 3.62790 4.32670 4.49839 4.65606 4.75972 4.81550 4.86376 4.98542 5.08074 5.14129 5.31996 5.36080 5.37637 5.41368 5.45466 5.48898 5.55439 5.64109 5.74075 5.85340 5.86975 5.93844 6.10576 6.14371 6.19433 6.25746 6.42243 6.64655 6.70472 6.79565 6.90621 6.94272 7.16184 7.23998 7.49749 7.68592 7.74463 7.89237 8.03364 8.11957 8.21631 8.54631 9.06417 9.66875 11.13991 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.003288 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.014979 B = 8514.384406 C = 8968.256953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.503 5.503 3 C 0.026 3.974 4 C 0.122 3.878 5 H 0.096 0.904 6 O -0.531 6.531 7 C 0.021 3.979 8 N -0.522 5.522 9 C 0.058 3.942 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.105 4.105 21 C 0.060 3.940 22 C 0.002 3.998 23 C -0.158 4.158 24 C -0.178 4.178 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.364 0.636 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.118 -8.969 5.009 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.226 5.226 3 C -0.103 4.103 4 C 0.062 3.938 5 H 0.114 0.886 6 O -0.334 6.334 7 C -0.108 4.108 8 N -0.246 5.246 9 C -0.069 4.069 10 C -0.141 4.141 11 C 0.030 3.970 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.067 4.067 22 C -0.107 4.107 23 C -0.195 4.195 24 C -0.216 4.216 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.210 0.790 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.510 -9.689 4.402 21.351 hybrid contribution 0.162 1.430 0.982 1.742 sum -18.349 -8.259 5.384 20.830 Atomic orbital electron populations 1.22379 0.87339 1.02015 1.00412 1.61671 1.07040 1.13250 1.40650 1.22903 0.97927 0.89016 1.00472 1.21801 0.92643 0.93648 0.85723 0.88590 1.86639 1.74062 1.55399 1.17263 1.22778 0.92248 0.97043 0.98739 1.61905 0.99766 1.17842 1.45117 1.22282 0.99136 0.87104 0.98406 1.21649 0.90044 1.03825 0.98631 1.18672 0.93400 0.89958 0.94983 1.21194 1.00716 0.92368 1.40450 0.92796 1.24969 0.97805 0.95451 0.95820 1.69871 1.37637 0.97248 1.48550 0.86695 0.84738 0.76934 0.79840 1.20275 1.21419 1.20406 1.21658 0.92116 1.00759 0.99767 1.22151 0.95188 0.96941 0.92465 1.22481 1.05100 0.89728 0.93385 1.23102 0.92208 1.00970 1.03248 1.23064 0.99141 0.97014 1.02347 0.91390 0.91300 0.95918 0.93991 0.90596 0.79003 0.91154 0.95165 0.92832 0.96243 0.89059 0.93733 0.96321 0.93118 0.93384 0.92330 0.96289 0.92275 0.89605 0.87606 0.88872 0.88944 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.39 60.06 0.56 0.78 16 2 N -0.50 -5.19 4.70 -234.88 -1.10 -6.30 16 3 C 0.03 0.26 4.66 -3.82 -0.02 0.24 16 4 C 0.12 1.56 2.93 -26.73 -0.08 1.48 16 5 H 0.10 1.37 5.99 -51.93 -0.31 1.06 16 6 O -0.53 -7.57 13.08 -35.23 -0.46 -8.03 16 7 C 0.02 0.30 4.62 -3.83 -0.02 0.28 16 8 N -0.52 -9.43 4.54 -234.66 -1.06 -10.50 16 9 C 0.06 1.16 5.46 -3.84 -0.02 1.13 16 10 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 11 C 0.05 1.23 2.16 -91.65 -0.20 1.04 16 12 C -0.51 -14.29 8.56 -34.44 -0.29 -14.58 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.80 11.37 55.43 0.63 -25.16 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.11 -2.30 5.32 -26.65 -0.14 -2.45 16 21 C 0.06 1.13 5.29 -3.83 -0.02 1.11 16 22 C 0.00 0.02 4.68 -67.71 -0.32 -0.30 16 23 C -0.16 -1.60 10.46 -26.69 -0.28 -1.88 16 24 C -0.18 -1.53 9.70 -26.69 -0.26 -1.79 16 25 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 26 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.42 7.83 -51.93 -0.41 0.01 16 29 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 30 H 0.36 4.11 9.05 45.56 0.41 4.53 16 31 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.05 0.97 8.01 -51.93 -0.42 0.56 16 34 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 36 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.02 6.21 -51.93 -0.32 0.69 16 43 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 44 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.82 7.25 -51.93 -0.38 0.44 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.94 362.92 -10.80 -40.74 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.94 Total: 3.13 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.31 Total: -15.96 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -1.54 Total: -41.96 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.46 Total: -8.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.94 -10.80 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.715 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds