Wall clock time and date at job start Tue Mar 31 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 110.99855 * 2 1 4 4 C 1.53006 * 109.47230 * 199.77565 * 3 2 1 5 5 H 1.09001 * 109.46542 * 299.92312 * 4 3 2 6 6 O 1.42898 * 109.47279 * 59.92213 * 4 3 2 7 7 C 1.52994 * 109.47123 * 179.97438 * 4 3 2 8 8 N 1.46903 * 109.47179 * 179.11999 * 7 4 3 9 9 C 1.46844 * 111.00177 * 169.72457 * 8 7 4 10 10 C 1.53037 * 109.52066 * 185.83454 * 9 8 7 11 11 C 1.53122 * 109.28269 * 300.81906 * 10 9 8 12 12 C 1.50695 * 109.57690 * 177.59387 * 11 10 9 13 13 H 1.08003 * 119.99891 * 240.29027 * 12 11 10 14 14 C 1.37879 * 120.00048 * 60.28491 * 12 11 10 15 15 N 1.31515 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99757 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47128 * 59.99837 * 16 14 12 18 18 H 1.48503 * 109.46697 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46796 * 299.99690 * 16 14 12 20 20 C 1.53119 * 109.15668 * 57.65680 * 11 10 9 21 21 C 1.46854 * 110.99370 * 293.93477 * 8 7 4 22 22 C 1.46900 * 111.00263 * 123.94932 * 2 1 3 23 23 C 1.53004 * 117.49894 * 124.79478 * 22 2 1 24 24 C 1.53002 * 117.49906 * 56.13653 * 22 2 1 25 25 H 1.09000 * 109.47239 * 62.33243 * 1 2 3 26 26 H 1.09006 * 109.46943 * 182.33377 * 1 2 3 27 27 H 1.08996 * 109.47493 * 302.32594 * 1 2 3 28 28 H 1.09003 * 109.47459 * 79.77411 * 3 2 1 29 29 H 1.09004 * 109.47031 * 319.76993 * 3 2 1 30 30 H 0.96698 * 113.99992 * 60.00212 * 6 4 3 31 31 H 1.09004 * 109.47175 * 299.11560 * 7 4 3 32 32 H 1.08998 * 109.47672 * 59.11592 * 7 4 3 33 33 H 1.09000 * 109.46489 * 305.84972 * 9 8 7 34 34 H 1.09008 * 109.46298 * 65.81878 * 9 8 7 35 35 H 1.09007 * 109.50108 * 180.88089 * 10 9 8 36 36 H 1.08998 * 109.53622 * 60.78814 * 10 9 8 37 37 H 1.08999 * 109.51976 * 297.75359 * 11 10 9 38 38 H 0.97000 * 119.99931 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.50169 * 182.41058 * 20 11 10 40 40 H 1.08999 * 109.53566 * 62.30507 * 20 11 10 41 41 H 1.08998 * 109.45970 * 294.17321 * 21 8 7 42 42 H 1.08992 * 109.46343 * 54.15740 * 21 8 7 43 43 H 1.09003 * 115.55506 * 270.46897 * 22 2 1 44 44 H 1.08994 * 117.49717 * 0.02562 * 23 22 2 45 45 H 1.09007 * 117.49741 * 145.02276 * 23 22 2 46 46 H 1.08996 * 117.50262 * 214.98492 * 24 22 2 47 47 H 1.09001 * 117.49512 * 359.97242 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.4454 1.3612 -0.4881 5 1 4.0480 0.7419 0.1764 6 8 3.4983 0.8291 -1.8132 7 6 3.9934 2.7896 -0.4887 8 7 5.3923 2.7772 -0.9372 9 6 5.8778 4.1409 -1.1842 10 6 7.2836 4.0820 -1.7862 11 6 8.2190 3.3550 -0.8160 12 6 9.5915 3.2412 -1.4278 13 1 10.0263 2.2679 -1.6014 14 6 10.2922 4.3795 -1.7660 15 7 9.7629 5.5646 -1.5542 16 14 11.9932 4.2382 -2.5250 17 1 11.9056 3.4792 -3.7983 18 1 12.5297 5.5966 -2.7937 19 1 12.8968 3.5266 -1.5856 20 6 7.6650 1.9550 -0.5378 21 6 6.2481 2.0755 0.0280 22 6 1.9954 -0.7659 1.1376 23 6 2.9716 -1.9037 0.8321 24 6 1.5426 -2.2204 1.2802 25 1 -0.3634 0.4772 -0.9101 26 1 -0.3633 -1.0269 0.0418 27 1 -0.3634 0.5495 0.8683 28 1 1.9552 1.7761 1.0113 29 1 1.3930 1.9918 -0.6638 30 1 2.9833 1.3313 -2.4595 31 1 3.4006 3.4059 -1.1646 32 1 3.9388 3.2002 0.5195 33 1 5.2062 4.6454 -1.8788 34 1 5.9081 4.6915 -0.2439 35 1 7.6499 5.0947 -1.9549 36 1 7.2522 3.5439 -2.7335 37 1 8.2815 3.9142 0.1175 38 1 10.2557 6.3655 -1.7925 39 1 8.3037 1.4480 0.1854 40 1 7.6391 1.3824 -1.4650 41 1 6.2767 2.6358 0.9625 42 1 5.8455 1.0798 0.2137 43 1 2.1564 -0.1969 2.0533 44 1 3.2235 -2.0837 -0.2130 45 1 3.7747 -2.0835 1.5469 46 1 1.4061 -2.6084 2.2896 47 1 0.8537 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397221041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:41 Heat of formation + Delta-G solvation = -41.256734 kcal Electronic energy + Delta-G solvation = -23176.751354 eV Core-core repulsion = 19973.128213 eV Total energy + Delta-G solvation = -3203.623141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31365 -39.37556 -37.66809 -35.52268 -34.85302 -33.27376 -31.59142 -30.68521 -28.20360 -26.62686 -24.99633 -24.05640 -23.21180 -23.08670 -21.98629 -21.18569 -20.34017 -18.45495 -17.83092 -17.01069 -16.75416 -16.53661 -16.16020 -15.93623 -15.84633 -15.24682 -14.95325 -14.79583 -14.42485 -14.18938 -14.00324 -13.80442 -13.58102 -13.04954 -12.84865 -12.83229 -12.77492 -12.69680 -12.54002 -12.22480 -12.18375 -12.03485 -11.87798 -11.73859 -11.35324 -11.25498 -11.09770 -10.86351 -10.65546 -10.61991 -10.34916 -9.19258 -9.08647 -8.07465 -6.20723 1.41421 1.43138 1.50661 2.44387 2.68918 2.90390 3.10932 3.19228 3.74913 3.83769 4.03923 4.07156 4.14546 4.21078 4.23485 4.33154 4.36822 4.39459 4.43411 4.55351 4.59617 4.64456 4.73354 4.74764 4.78603 4.80545 4.86307 4.90906 4.94779 5.03804 5.09858 5.13510 5.20834 5.24628 5.34391 5.36422 5.56756 5.63395 6.00857 6.03792 6.09196 6.17790 6.32650 6.36663 6.42206 6.90110 7.13050 7.46673 8.96977 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.003288 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.014979 B = 8514.384406 C = 8968.256953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.518 5.518 3 C 0.034 3.966 4 C 0.132 3.868 5 H 0.079 0.921 6 O -0.552 6.552 7 C 0.023 3.977 8 N -0.530 5.530 9 C 0.069 3.931 10 C -0.094 4.094 11 C 0.046 3.954 12 C -0.536 4.536 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.098 4.098 21 C 0.069 3.931 22 C -0.005 4.005 23 C -0.172 4.172 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.377 0.623 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.028 0.972 37 H -0.012 1.012 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.019 0.981 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 -9.525 5.236 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.241 5.241 3 C -0.095 4.095 4 C 0.071 3.929 5 H 0.097 0.903 6 O -0.357 6.357 7 C -0.105 4.105 8 N -0.255 5.255 9 C -0.058 4.058 10 C -0.133 4.133 11 C 0.027 3.973 12 C -0.574 4.574 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.136 4.136 21 C -0.059 4.059 22 C -0.114 4.114 23 C -0.210 4.210 24 C -0.198 4.198 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.006 0.994 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.127 0.873 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.167 -10.252 4.630 23.092 hybrid contribution 0.660 1.584 0.903 1.939 sum -19.507 -8.668 5.533 22.051 Atomic orbital electron populations 1.22410 0.85988 1.02569 1.01043 1.61617 1.08288 1.13227 1.40996 1.22769 0.96246 0.89476 1.01028 1.21667 0.94091 0.92094 0.85035 0.90336 1.86607 1.74703 1.56195 1.18194 1.22877 0.89596 0.98499 0.99548 1.61832 1.01769 1.16354 1.45553 1.22048 0.96971 0.88528 0.98282 1.21406 0.92620 1.01423 0.97829 1.18640 0.93257 0.91795 0.93595 1.21564 1.02311 0.92365 1.41123 0.93310 1.25737 1.01535 0.95114 0.96190 1.70005 1.38936 0.97752 1.49007 0.85690 0.80219 0.77145 0.79071 1.19754 1.20773 1.19743 1.21521 0.94392 0.98241 0.99477 1.22014 0.93435 0.98212 0.92217 1.22550 1.05178 0.90260 0.93407 1.23047 0.93401 1.02349 1.02169 1.23111 0.97629 0.95876 1.03185 0.90681 0.90853 0.95306 0.93372 0.89002 0.77574 0.89261 0.94314 0.90630 0.96814 0.92003 0.95287 0.99409 0.93050 0.93179 0.93466 0.96320 0.90294 0.89387 0.89719 0.88491 0.87294 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.39 127.69 1.20 1.58 16 2 N -0.52 -9.56 4.70 -897.02 -4.22 -13.78 16 3 C 0.03 0.60 4.66 86.31 0.40 1.00 16 4 C 0.13 3.08 2.93 30.59 0.09 3.17 16 5 H 0.08 2.13 5.99 -2.39 -0.01 2.11 16 6 O -0.55 -14.81 13.08 -148.98 -1.95 -16.76 16 7 C 0.02 0.60 4.62 86.30 0.40 1.00 16 8 N -0.53 -18.50 4.54 -896.34 -4.07 -22.57 16 9 C 0.07 2.72 5.46 86.33 0.47 3.19 16 10 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 11 C 0.05 2.40 2.16 -11.46 -0.02 2.37 16 12 C -0.54 -30.83 8.56 25.60 0.22 -30.61 16 13 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 14 C 0.01 0.72 5.31 84.66 0.45 1.17 16 15 N -0.92 -54.07 11.37 21.45 0.24 -53.83 16 16 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 C -0.10 -4.37 5.32 30.65 0.16 -4.21 16 21 C 0.07 2.53 5.29 86.33 0.46 2.99 16 22 C -0.01 -0.09 4.68 44.92 0.21 0.12 16 23 C -0.17 -3.35 10.46 30.62 0.32 -3.03 16 24 C -0.16 -2.44 9.70 30.62 0.30 -2.14 16 25 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 26 H 0.07 0.95 6.69 -2.38 -0.02 0.93 16 27 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.81 7.83 -2.39 -0.02 0.80 16 29 H 0.09 1.35 7.92 -2.38 -0.02 1.33 16 30 H 0.38 7.71 9.05 -74.06 -0.67 7.04 16 31 H 0.09 1.98 7.98 -2.38 -0.02 1.96 16 32 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 33 H 0.08 2.62 8.01 -2.39 -0.02 2.61 16 34 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 3.40 6.18 -2.38 -0.01 3.39 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 2.61 6.21 -2.39 -0.01 2.60 16 43 H 0.09 1.56 7.89 -2.39 -0.02 1.54 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.10 1.75 8.14 -2.38 -0.02 1.74 16 46 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.10 1.47 7.25 -2.39 -0.02 1.45 16 Total: -1.00 -65.10 362.92 -2.90 -68.01 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.25 Total: 20.00 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 4.81 Total: -27.89 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -8.04 Total: -90.18 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.95 Total: -16.76 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.10 -2.90 -68.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397221041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.749 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds