Wall clock time and date at job start Tue Mar 31 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 C 1.46494 * 119.99905 * 269.99649 * 3 2 1 5 5 C 1.52999 * 109.47208 * 275.30396 * 4 3 2 6 6 C 1.34775 * 119.99766 * 90.00232 * 3 2 1 7 7 O 1.21280 * 120.00330 * 355.63431 * 6 3 2 8 8 C 1.50708 * 119.99844 * 175.91305 * 6 3 2 9 9 H 1.09000 * 109.46704 * 315.41255 * 8 6 3 10 10 C 1.53004 * 109.47164 * 75.40857 * 8 6 3 11 11 N 1.46894 * 109.47469 * 195.41297 * 8 6 3 12 12 C 1.46858 * 110.99607 * 299.21101 * 11 8 6 13 13 C 1.53035 * 109.52035 * 174.16207 * 12 11 8 14 14 C 1.53119 * 109.28393 * 59.17408 * 13 12 11 15 15 C 1.50694 * 109.52338 * 182.44015 * 14 13 12 16 16 H 1.08000 * 119.99850 * 119.68794 * 15 14 13 17 17 C 1.37881 * 120.00315 * 299.68073 * 15 14 13 18 18 N 1.31513 * 119.99608 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00119 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47069 * 60.00341 * 19 17 15 21 21 H 1.48496 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46797 * 300.00564 * 19 17 15 23 23 C 1.53123 * 109.16189 * 302.34958 * 14 13 12 24 24 C 1.46844 * 111.00256 * 175.00217 * 11 8 6 25 25 H 1.08997 * 109.46796 * 60.00477 * 1 2 3 26 26 H 1.08998 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47024 * 299.99764 * 1 2 3 28 28 H 1.09001 * 109.47106 * 239.99734 * 2 1 3 29 29 H 1.09009 * 109.47081 * 119.99805 * 2 1 3 30 30 H 1.09003 * 109.47186 * 35.30672 * 4 3 2 31 31 H 1.09002 * 109.47135 * 155.30820 * 4 3 2 32 32 H 1.09002 * 109.47132 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47423 * 299.99738 * 5 4 3 34 34 H 1.09002 * 109.47352 * 60.00599 * 5 4 3 35 35 H 1.09006 * 109.46992 * 295.15783 * 10 8 6 36 36 H 1.09005 * 109.46656 * 55.15062 * 10 8 6 37 37 H 1.08992 * 109.47076 * 175.15311 * 10 8 6 38 38 H 1.09004 * 109.45765 * 294.17107 * 12 11 8 39 39 H 1.08994 * 109.46621 * 54.14480 * 12 11 8 40 40 H 1.09008 * 109.50503 * 299.23508 * 13 12 11 41 41 H 1.09001 * 109.50419 * 179.12268 * 13 12 11 42 42 H 1.09004 * 109.51827 * 62.24822 * 14 13 12 43 43 H 0.96999 * 119.99792 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.50202 * 297.71258 * 23 14 13 45 45 H 1.08995 * 109.50168 * 177.59224 * 23 14 13 46 46 H 1.09000 * 109.45989 * 305.85375 * 24 11 8 47 47 H 1.09001 * 109.46451 * 65.82158 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6632 1.7246 -1.7770 6 6 2.2429 2.0165 1.1672 7 8 1.9664 1.4739 2.2160 8 6 2.8320 3.4037 1.1689 9 1 3.6619 3.4468 0.4635 10 6 1.7593 4.4138 0.7566 11 7 3.3177 3.7279 2.5168 12 6 2.2207 3.6978 3.4927 13 6 2.7842 3.8956 4.9017 14 6 3.5161 5.2388 4.9697 15 6 4.1245 5.4122 6.3374 16 1 5.1931 5.5281 6.4423 17 6 3.3169 5.4231 7.4549 18 7 2.0157 5.2816 7.3272 19 14 4.0710 5.6388 9.1503 20 1 4.7864 6.9385 9.2121 21 1 2.9977 5.6147 10.1762 22 1 5.0286 4.5339 9.4102 23 6 4.6220 5.2628 3.9109 24 6 4.0051 5.0254 2.5306 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.5210 1.7562 -2.0027 31 1 2.1878 3.1485 -1.1165 32 1 3.8447 2.2381 -2.7212 33 1 4.4047 2.0402 -1.0430 34 1 3.7380 0.6479 -1.9292 35 1 1.4606 4.2260 -0.2748 36 1 0.8930 4.3109 1.4102 37 1 2.1599 5.4239 0.8407 38 1 1.5136 4.4966 3.2690 39 1 1.7113 2.7358 3.4371 40 1 3.4812 3.0895 5.1315 41 1 1.9682 3.8887 5.6244 42 1 2.8110 6.0478 4.7783 43 1 1.4475 5.2889 8.1133 44 1 5.3477 4.4782 4.1249 45 1 5.1188 6.2328 3.9255 46 1 4.7917 5.0276 1.7760 47 1 3.2896 5.8179 2.3114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397243488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:35 Heat of formation + Delta-G solvation = -27.729593 kcal Electronic energy + Delta-G solvation = -23969.415876 eV Core-core repulsion = 20766.379315 eV Total energy + Delta-G solvation = -3203.036560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41805 -37.98083 -36.13616 -34.41744 -32.48383 -31.59455 -29.88567 -29.52186 -28.84669 -25.76193 -24.55796 -23.77948 -22.55195 -22.00117 -20.91761 -18.89209 -18.27995 -17.03473 -16.41221 -16.19061 -15.37418 -14.89158 -14.59909 -14.27943 -14.11635 -13.95622 -13.76452 -13.38600 -13.03439 -12.83221 -12.78827 -12.51594 -12.23453 -12.20701 -11.94785 -11.86736 -11.71157 -11.52352 -11.21290 -11.08017 -10.92313 -10.81346 -10.62065 -10.45722 -10.01782 -9.80372 -9.53871 -9.11527 -8.84290 -8.74902 -8.37133 -8.13644 -7.59968 -5.86167 -3.91390 2.78941 2.91075 3.39723 3.43953 3.46860 4.42369 4.52931 4.55694 4.68393 4.90880 4.98457 5.08228 5.11048 5.18079 5.25529 5.29536 5.42683 5.43809 5.48508 5.61763 5.63888 5.74597 5.83802 5.85685 5.92964 5.99396 6.08544 6.11937 6.29298 6.40465 6.44845 6.61086 6.78661 6.92215 7.02770 7.17073 7.31127 7.39298 7.60500 7.74040 7.85460 7.96186 8.19576 8.31784 8.40641 8.60999 9.12017 9.72132 11.19859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.004081 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.879118 B = 6859.406946 C = 7363.978948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.619 5.619 4 C 0.094 3.906 5 C -0.173 4.173 6 C 0.524 3.476 7 O -0.509 6.509 8 C 0.064 3.936 9 H 0.096 0.904 10 C -0.187 4.187 11 N -0.514 5.514 12 C 0.033 3.967 13 C -0.099 4.099 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.105 4.105 24 C 0.059 3.941 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.101 0.899 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.018 0.982 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -6.657 -20.956 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.354 5.354 4 C -0.029 4.029 5 C -0.231 4.231 6 C 0.312 3.688 7 O -0.383 6.383 8 C -0.049 4.049 9 H 0.114 0.886 10 C -0.246 4.246 11 N -0.238 5.238 12 C -0.094 4.094 13 C -0.137 4.137 14 C 0.028 3.972 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.143 4.143 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.388 -7.320 -20.106 21.442 hybrid contribution -0.196 0.774 0.531 0.958 sum -1.584 -6.546 -19.575 20.701 Atomic orbital electron populations 1.22123 0.96120 1.01975 1.02300 1.21345 0.94240 0.82557 1.02810 1.48062 1.67204 1.14226 1.05940 1.21798 0.97052 0.98521 0.85518 1.22223 0.97278 1.02148 1.01450 1.20680 0.77324 0.87873 0.82932 1.90582 1.50308 1.67084 1.30314 1.21640 0.97128 0.91499 0.94611 0.88613 1.22542 1.00220 1.00355 1.01477 1.62092 1.28665 1.30980 1.02077 1.22869 0.91341 1.01610 0.93541 1.21590 1.01244 0.98459 0.92433 1.18705 0.92290 0.93767 0.92393 1.21180 0.93308 1.49076 0.91312 0.92919 1.24962 0.94826 0.95322 0.98866 1.69883 1.03206 1.50628 1.29325 0.86713 0.78760 0.78564 0.84254 1.20453 1.21418 1.20344 1.21662 0.99765 0.99662 0.93178 1.22177 0.96595 0.88726 0.99372 0.92897 0.91850 0.91992 0.91002 0.89936 0.90720 0.89240 0.91568 0.91995 0.92415 0.91819 0.91471 0.90950 0.96708 0.88132 0.94060 0.89231 0.96339 0.93144 0.92533 0.93249 0.92680 0.95483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.11 1.15 6.12 -4.04 -0.02 1.13 16 3 N -0.62 -7.03 2.47 -173.68 -0.43 -7.46 16 4 C 0.09 0.74 5.72 -4.05 -0.02 0.72 16 5 C -0.17 -1.22 10.17 37.16 0.38 -0.84 16 6 C 0.52 8.08 6.84 -10.98 -0.08 8.01 16 7 O -0.51 -10.00 12.99 5.56 0.07 -9.93 16 8 C 0.06 0.94 1.93 -68.86 -0.13 0.81 16 9 H 0.10 1.21 6.71 -51.93 -0.35 0.86 16 10 C -0.19 -2.40 8.16 37.16 0.30 -2.09 16 11 N -0.51 -9.77 4.55 -228.07 -1.04 -10.81 16 12 C 0.03 0.72 4.52 -3.83 -0.02 0.70 16 13 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 14 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 15 C -0.51 -14.61 8.56 -34.44 -0.29 -14.91 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 18 N -0.89 -26.45 11.37 55.43 0.63 -25.82 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 C -0.10 -2.29 5.32 -26.65 -0.14 -2.43 16 24 C 0.06 1.08 5.03 -3.84 -0.02 1.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.08 1.01 7.49 -51.92 -0.39 0.62 16 30 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.09 0.69 4.08 -51.93 -0.21 0.47 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.53 7.40 -51.93 -0.38 0.14 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.61 5.62 -51.93 -0.29 0.32 16 36 H 0.07 0.99 6.80 -51.93 -0.35 0.64 16 37 H 0.07 0.93 6.43 -51.93 -0.33 0.59 16 38 H 0.01 0.32 6.73 -51.93 -0.35 -0.02 16 39 H 0.10 2.30 4.79 -52.22 -0.25 2.05 16 40 H 0.04 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.09 2.56 6.17 -51.93 -0.32 2.24 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 47 H 0.03 0.49 6.62 -51.93 -0.34 0.15 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -32.18 349.87 -8.79 -40.97 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.18 Total: -0.19 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.10 Total: -9.06 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.84 Total: -44.09 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.18 -8.79 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397243488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.239 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds