Wall clock time and date at job start Tue Mar 31 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 C 1.46494 * 119.99905 * 269.99649 * 3 2 1 5 5 C 1.52999 * 109.47208 * 275.30396 * 4 3 2 6 6 C 1.34775 * 119.99766 * 90.00232 * 3 2 1 7 7 O 1.21280 * 120.00330 * 355.63431 * 6 3 2 8 8 C 1.50708 * 119.99844 * 175.91305 * 6 3 2 9 9 H 1.09000 * 109.46704 * 315.41255 * 8 6 3 10 10 C 1.53004 * 109.47164 * 75.40857 * 8 6 3 11 11 N 1.46894 * 109.47469 * 195.41297 * 8 6 3 12 12 C 1.46858 * 110.99607 * 299.21101 * 11 8 6 13 13 C 1.53035 * 109.52035 * 174.16207 * 12 11 8 14 14 C 1.53119 * 109.28393 * 59.17408 * 13 12 11 15 15 C 1.50694 * 109.52338 * 182.44015 * 14 13 12 16 16 H 1.08000 * 119.99850 * 119.68794 * 15 14 13 17 17 C 1.37881 * 120.00315 * 299.68073 * 15 14 13 18 18 N 1.31513 * 119.99608 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00119 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47069 * 60.00341 * 19 17 15 21 21 H 1.48496 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46797 * 300.00564 * 19 17 15 23 23 C 1.53123 * 109.16189 * 302.34958 * 14 13 12 24 24 C 1.46844 * 111.00256 * 175.00217 * 11 8 6 25 25 H 1.08997 * 109.46796 * 60.00477 * 1 2 3 26 26 H 1.08998 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47024 * 299.99764 * 1 2 3 28 28 H 1.09001 * 109.47106 * 239.99734 * 2 1 3 29 29 H 1.09009 * 109.47081 * 119.99805 * 2 1 3 30 30 H 1.09003 * 109.47186 * 35.30672 * 4 3 2 31 31 H 1.09002 * 109.47135 * 155.30820 * 4 3 2 32 32 H 1.09002 * 109.47132 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47423 * 299.99738 * 5 4 3 34 34 H 1.09002 * 109.47352 * 60.00599 * 5 4 3 35 35 H 1.09006 * 109.46992 * 295.15783 * 10 8 6 36 36 H 1.09005 * 109.46656 * 55.15062 * 10 8 6 37 37 H 1.08992 * 109.47076 * 175.15311 * 10 8 6 38 38 H 1.09004 * 109.45765 * 294.17107 * 12 11 8 39 39 H 1.08994 * 109.46621 * 54.14480 * 12 11 8 40 40 H 1.09008 * 109.50503 * 299.23508 * 13 12 11 41 41 H 1.09001 * 109.50419 * 179.12268 * 13 12 11 42 42 H 1.09004 * 109.51827 * 62.24822 * 14 13 12 43 43 H 0.96999 * 119.99792 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.50202 * 297.71258 * 23 14 13 45 45 H 1.08995 * 109.50168 * 177.59224 * 23 14 13 46 46 H 1.09000 * 109.45989 * 305.85375 * 24 11 8 47 47 H 1.09001 * 109.46451 * 65.82158 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6632 1.7246 -1.7770 6 6 2.2429 2.0165 1.1672 7 8 1.9664 1.4739 2.2160 8 6 2.8320 3.4037 1.1689 9 1 3.6619 3.4468 0.4635 10 6 1.7593 4.4138 0.7566 11 7 3.3177 3.7279 2.5168 12 6 2.2207 3.6978 3.4927 13 6 2.7842 3.8956 4.9017 14 6 3.5161 5.2388 4.9697 15 6 4.1245 5.4122 6.3374 16 1 5.1931 5.5281 6.4423 17 6 3.3169 5.4231 7.4549 18 7 2.0157 5.2816 7.3272 19 14 4.0710 5.6388 9.1503 20 1 4.7864 6.9385 9.2121 21 1 2.9977 5.6147 10.1762 22 1 5.0286 4.5339 9.4102 23 6 4.6220 5.2628 3.9109 24 6 4.0051 5.0254 2.5306 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.5210 1.7562 -2.0027 31 1 2.1878 3.1485 -1.1165 32 1 3.8447 2.2381 -2.7212 33 1 4.4047 2.0402 -1.0430 34 1 3.7380 0.6479 -1.9292 35 1 1.4606 4.2260 -0.2748 36 1 0.8930 4.3109 1.4102 37 1 2.1599 5.4239 0.8407 38 1 1.5136 4.4966 3.2690 39 1 1.7113 2.7358 3.4371 40 1 3.4812 3.0895 5.1315 41 1 1.9682 3.8887 5.6244 42 1 2.8110 6.0478 4.7783 43 1 1.4475 5.2889 8.1133 44 1 5.3477 4.4782 4.1249 45 1 5.1188 6.2328 3.9255 46 1 4.7917 5.0276 1.7760 47 1 3.2896 5.8179 2.3114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397243488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:34 Heat of formation + Delta-G solvation = -48.595183 kcal Electronic energy + Delta-G solvation = -23970.320676 eV Core-core repulsion = 20766.379315 eV Total energy + Delta-G solvation = -3203.941360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60652 -39.46061 -37.21379 -36.13927 -33.99708 -32.80842 -31.43872 -30.92214 -30.01859 -27.51813 -25.89541 -24.50933 -23.87626 -23.78547 -22.39433 -20.17255 -19.84698 -18.41148 -18.12559 -17.39374 -16.67502 -16.44680 -16.05888 -15.65339 -15.47845 -14.95252 -14.78983 -14.74141 -14.40977 -14.31416 -13.96470 -13.83763 -13.48103 -13.44819 -13.16288 -12.99769 -12.84569 -12.76574 -12.69064 -12.55398 -12.41472 -12.34259 -11.97078 -11.89614 -11.69621 -11.62549 -11.36904 -10.93087 -10.79156 -10.41953 -10.05853 -9.66367 -9.09006 -8.06822 -6.20949 1.39529 1.42435 1.49630 1.63914 1.97659 2.43847 3.10107 3.19651 3.51460 3.96609 4.01859 4.11071 4.16540 4.26223 4.28047 4.36052 4.44270 4.47694 4.50792 4.53610 4.63080 4.64429 4.74521 4.80594 4.88677 4.93147 4.97226 5.01775 5.03895 5.07452 5.18807 5.23079 5.27026 5.29491 5.34697 5.43585 5.59259 5.62535 5.76451 5.99553 6.02765 6.22189 6.32743 6.41557 6.51365 6.91321 7.28497 7.46546 8.97634 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.004081 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.879118 B = 6859.406946 C = 7363.978948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.609 5.609 4 C 0.087 3.913 5 C -0.169 4.169 6 C 0.516 3.484 7 O -0.565 6.565 8 C 0.064 3.936 9 H 0.128 0.872 10 C -0.180 4.180 11 N -0.529 5.529 12 C 0.053 3.947 13 C -0.089 4.089 14 C 0.045 3.955 15 C -0.535 4.535 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.099 4.099 24 C 0.065 3.935 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.009 0.991 39 H 0.091 0.909 40 H 0.017 0.983 41 H 0.053 0.947 42 H -0.011 1.011 43 H 0.259 0.741 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -6.475 -24.089 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.013 4.013 3 N -0.342 5.342 4 C -0.034 4.034 5 C -0.227 4.227 6 C 0.305 3.695 7 O -0.444 6.444 8 C -0.047 4.047 9 H 0.146 0.854 10 C -0.239 4.239 11 N -0.253 5.253 12 C -0.074 4.074 13 C -0.128 4.128 14 C 0.026 3.974 15 C -0.573 4.573 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.137 4.137 24 C -0.062 4.062 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.109 0.891 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.007 0.993 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.419 -7.135 -23.312 24.383 hybrid contribution -0.505 0.662 1.412 1.640 sum -0.924 -6.472 -21.899 22.854 Atomic orbital electron populations 1.22063 0.95518 1.02817 1.01442 1.21484 0.94715 0.81987 1.03131 1.48141 1.65472 1.14532 1.06093 1.22119 0.98573 0.98602 0.84123 1.22191 0.95932 1.02546 1.02037 1.20904 0.77123 0.88148 0.83366 1.90557 1.52939 1.68302 1.32577 1.21784 0.98845 0.91647 0.92467 0.85403 1.22493 0.98424 0.99802 1.03144 1.61915 1.27849 1.31519 1.04040 1.22459 0.91900 1.00809 0.92261 1.21352 0.99385 0.97625 0.94391 1.18664 0.93031 0.92472 0.93203 1.21597 0.93473 1.49336 0.92938 0.92956 1.25803 0.95245 0.94937 1.02902 1.70044 1.04478 1.51119 1.30289 0.85656 0.78015 0.78903 0.79351 1.19236 1.20952 1.19890 1.21535 0.98125 0.99935 0.94126 1.22133 0.97566 0.88560 0.97956 0.90981 0.90283 0.95426 0.87464 0.92747 0.87996 0.88640 0.89203 0.93537 0.92306 0.87979 0.94158 0.90486 0.97306 0.89095 0.96445 0.92877 0.99265 0.93202 0.93528 0.92180 0.88599 0.94925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.24 71.98 0.74 -2.09 16 2 C 0.11 2.05 6.12 86.38 0.53 2.58 16 3 N -0.61 -12.58 2.47 -821.79 -2.03 -14.61 16 4 C 0.09 1.01 5.72 86.38 0.49 1.50 16 5 C -0.17 -1.69 10.17 71.98 0.73 -0.96 16 6 C 0.52 15.62 6.84 87.66 0.60 16.22 16 7 O -0.56 -23.13 12.99 -3.03 -0.04 -23.17 16 8 C 0.06 1.77 1.93 44.17 0.09 1.86 16 9 H 0.13 2.73 6.71 -2.39 -0.02 2.71 16 10 C -0.18 -4.20 8.16 71.98 0.59 -3.61 16 11 N -0.53 -19.90 4.55 -875.49 -3.98 -23.88 16 12 C 0.05 2.42 4.52 86.32 0.39 2.81 16 13 C -0.09 -4.86 5.12 30.65 0.16 -4.71 16 14 C 0.04 2.43 2.16 -11.46 -0.02 2.41 16 15 C -0.54 -31.58 8.56 25.60 0.22 -31.36 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.55 5.31 84.66 0.45 0.99 16 18 N -0.92 -56.76 11.37 21.45 0.24 -56.51 16 19 Si 0.96 46.09 29.54 68.60 2.03 48.11 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 23 C -0.10 -4.34 5.32 30.65 0.16 -4.18 16 24 C 0.07 2.27 5.03 86.33 0.43 2.71 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.11 1.27 8.07 -2.39 -0.02 1.25 16 29 H 0.05 1.35 7.49 -2.38 -0.02 1.33 16 30 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 31 H 0.10 1.00 4.08 -2.39 -0.01 0.99 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.63 7.40 -2.39 -0.02 0.61 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 1.56 5.62 -2.38 -0.01 1.55 16 36 H 0.04 1.17 6.80 -2.38 -0.02 1.15 16 37 H 0.08 1.75 6.43 -2.39 -0.02 1.73 16 38 H 0.01 0.41 6.73 -2.39 -0.02 0.39 16 39 H 0.09 4.42 4.79 -7.01 -0.03 4.39 16 40 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.05 3.25 6.17 -2.39 -0.01 3.23 16 42 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.10 2.63 8.08 -2.39 -0.02 2.61 16 47 H 0.03 1.12 6.62 -2.39 -0.02 1.10 16 Total: -1.00 -75.30 349.87 2.68 -72.62 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.91 Total: 13.26 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.55 Total: -15.82 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -5.77 Total: -95.00 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.04 Total: -23.17 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.30 2.68 -72.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397243488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.030 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds