Wall clock time and date at job start Tue Mar 31 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47287 * 2 1 4 4 C 1.46495 * 119.99540 * 272.46567 * 3 2 1 5 5 C 1.53000 * 109.47395 * 275.51256 * 4 3 2 6 6 C 1.34772 * 120.00184 * 92.46696 * 3 2 1 7 7 O 1.21278 * 119.99985 * 353.75711 * 6 3 2 8 8 C 1.50706 * 119.99876 * 173.76007 * 6 3 2 9 9 H 1.08997 * 109.46602 * 25.69024 * 8 6 3 10 10 C 1.53002 * 109.46927 * 265.69045 * 8 6 3 11 11 N 1.46898 * 109.46882 * 145.69297 * 8 6 3 12 12 C 1.46847 * 110.99891 * 179.22580 * 11 8 6 13 13 C 1.53035 * 109.52576 * 185.83785 * 12 11 8 14 14 C 1.53116 * 109.27557 * 300.81850 * 13 12 11 15 15 C 1.50704 * 109.52099 * 177.56099 * 14 13 12 16 16 H 1.07996 * 120.00497 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99894 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99938 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47150 * 89.99969 * 19 17 15 21 21 H 1.48502 * 109.47340 * 209.99964 * 19 17 15 22 22 H 1.48508 * 109.47161 * 329.99918 * 19 17 15 23 23 C 1.53116 * 109.16486 * 57.65359 * 14 13 12 24 24 C 1.46853 * 111.00014 * 303.43237 * 11 8 6 25 25 H 1.08996 * 109.46897 * 184.90655 * 1 2 3 26 26 H 1.09000 * 109.47198 * 304.91370 * 1 2 3 27 27 H 1.09001 * 109.46545 * 64.90265 * 1 2 3 28 28 H 1.08999 * 109.47475 * 239.99530 * 2 1 3 29 29 H 1.09007 * 109.47174 * 119.99391 * 2 1 3 30 30 H 1.09005 * 109.47636 * 35.51283 * 4 3 2 31 31 H 1.09000 * 109.47163 * 155.51040 * 4 3 2 32 32 H 1.08991 * 109.47138 * 60.00006 * 5 4 3 33 33 H 1.09001 * 109.47254 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46990 * 299.99915 * 5 4 3 35 35 H 1.09003 * 109.46958 * 53.52296 * 10 8 6 36 36 H 1.08994 * 109.46875 * 173.52431 * 10 8 6 37 37 H 1.08997 * 109.47003 * 293.52503 * 10 8 6 38 38 H 1.09003 * 109.46219 * 65.81633 * 12 11 8 39 39 H 1.09000 * 109.44910 * 305.84996 * 12 11 8 40 40 H 1.09003 * 109.50486 * 180.87891 * 13 12 11 41 41 H 1.08997 * 109.50470 * 60.76044 * 13 12 11 42 42 H 1.09001 * 109.52481 * 297.74436 * 14 13 12 43 43 H 0.97003 * 120.00070 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.50091 * 62.28003 * 23 14 13 45 45 H 1.08999 * 109.50874 * 182.39923 * 23 14 13 46 46 H 1.09001 * 109.45650 * 294.18066 * 24 11 8 47 47 H 1.08995 * 109.46195 * 54.14553 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2111 2.0900 -1.2676 5 6 3.5878 1.7464 -1.8399 6 6 2.2904 1.9999 1.1661 7 8 2.0250 1.4563 2.2172 8 6 2.9244 3.3671 1.1637 9 1 2.6821 3.8782 0.2320 10 6 4.4427 3.2254 1.2879 11 7 2.4110 4.1468 2.2980 12 6 3.0218 5.4815 2.3385 13 6 2.5763 6.2096 3.6087 14 6 1.0496 6.3261 3.6154 15 6 0.6007 6.9890 4.8923 16 1 1.3305 7.2964 5.6266 17 6 -0.7418 7.2019 5.1234 18 7 -1.6305 6.8271 4.2295 19 14 -1.2982 8.0229 6.7064 20 1 -1.3532 9.4936 6.5084 21 1 -2.6466 7.5224 7.0762 22 1 -0.3371 7.7052 7.7931 23 6 0.4381 4.9253 3.5237 24 6 0.9456 4.2345 2.2560 25 1 -0.3633 -1.0239 0.0879 26 1 -0.3633 0.5882 0.8427 27 1 -0.3632 0.4359 -0.9307 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.4381 1.7876 -1.9742 31 1 2.1466 3.1645 -1.0965 32 1 3.6523 0.6719 -2.0110 33 1 3.7313 2.2740 -2.7828 34 1 4.3607 2.0488 -1.1334 35 1 4.8094 2.5526 0.5126 36 1 4.9096 4.2033 1.1710 37 1 4.6907 2.8193 2.2685 38 1 2.7076 6.0514 1.4640 39 1 4.1074 5.3840 2.3375 40 1 3.0174 7.2061 3.6307 41 1 2.9022 5.6473 4.4837 42 1 0.7259 6.9215 2.7616 43 1 -2.5750 6.9765 4.3923 44 1 0.7305 4.3428 4.3974 45 1 -0.6483 5.0042 3.4851 46 1 0.6412 4.8102 1.3819 47 1 0.5234 3.2315 2.1951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397243489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:37 Heat of formation + Delta-G solvation = -36.189401 kcal Electronic energy + Delta-G solvation = -23978.554103 eV Core-core repulsion = 20775.150697 eV Total energy + Delta-G solvation = -3203.403405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30802 -37.93456 -36.08673 -34.41017 -32.48918 -31.61128 -30.13774 -29.67191 -28.95047 -25.67258 -24.61428 -23.69010 -22.58220 -21.75721 -20.98590 -18.63352 -18.50404 -17.24688 -16.75994 -16.22734 -15.19495 -15.10554 -14.46279 -14.26698 -14.18774 -13.91233 -13.65597 -13.24468 -12.83846 -12.82397 -12.69114 -12.53896 -12.43580 -12.24327 -12.06394 -11.96134 -11.66962 -11.43631 -11.19941 -11.06344 -11.02763 -10.86001 -10.64775 -10.43733 -10.15443 -9.91890 -9.41512 -9.33902 -8.87613 -8.72833 -8.61093 -8.22863 -7.68845 -5.91051 -3.95998 2.79568 2.94062 3.35745 3.42410 3.46517 4.34081 4.49247 4.51169 4.67443 4.91710 5.00715 5.04687 5.17122 5.23918 5.31738 5.35741 5.39424 5.42912 5.49117 5.65717 5.68561 5.73321 5.81252 5.87355 5.93067 5.97594 6.10958 6.15547 6.20408 6.29188 6.39583 6.55248 6.68158 6.69991 6.91189 7.12461 7.22326 7.35461 7.52493 7.66012 7.73453 7.88816 8.12681 8.22782 8.38912 8.55353 9.07542 9.68055 11.15258 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.004328 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.680518 B = 6468.630401 C = 7102.324573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.621 5.621 4 C 0.101 3.899 5 C -0.174 4.174 6 C 0.522 3.478 7 O -0.511 6.511 8 C 0.062 3.938 9 H 0.053 0.947 10 C -0.139 4.139 11 N -0.513 5.513 12 C 0.060 3.940 13 C -0.106 4.106 14 C 0.048 3.952 15 C -0.509 4.509 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.100 4.100 24 C 0.057 3.943 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.017 0.983 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.180 -10.851 -14.543 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.357 5.357 4 C -0.022 4.022 5 C -0.233 4.233 6 C 0.310 3.690 7 O -0.384 6.384 8 C -0.050 4.050 9 H 0.071 0.929 10 C -0.197 4.197 11 N -0.240 5.240 12 C -0.068 4.068 13 C -0.143 4.143 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.138 4.138 24 C -0.070 4.070 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.962 -11.397 -13.543 19.840 hybrid contribution -0.709 0.848 -0.131 1.113 sum 8.253 -10.549 -13.674 19.141 Atomic orbital electron populations 1.22129 0.95959 1.02141 1.02411 1.21342 0.94439 0.82474 1.02622 1.48110 1.67026 1.14351 1.06188 1.21627 0.97443 0.97765 0.85411 1.22298 0.97529 1.02090 1.01334 1.20604 0.77741 0.87615 0.83086 1.90706 1.50721 1.66246 1.30726 1.21702 0.96393 0.92132 0.94759 0.92918 1.21833 0.92411 1.02385 1.03065 1.61884 1.07562 1.15372 1.39144 1.22210 0.97855 0.87785 0.98927 1.21674 0.99931 0.97480 0.95263 1.18693 0.88684 0.92832 0.96871 1.21212 0.91853 1.37989 1.03667 0.92738 1.24964 0.96880 0.95683 0.96482 1.69880 1.01214 1.47564 1.34536 0.86637 0.77981 0.79519 0.84104 1.20853 1.21327 1.19932 1.21616 1.02712 0.96421 0.93097 1.22323 0.85331 0.99523 0.99829 0.91825 0.91830 0.92822 0.91069 0.90011 0.90585 0.89862 0.92400 0.91514 0.91857 0.92250 0.91347 0.90848 0.95855 0.91883 0.93081 0.92326 0.96243 0.93169 0.93633 0.89049 0.96432 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.11 1.22 6.13 -4.04 -0.02 1.19 16 3 N -0.62 -7.54 2.47 -173.68 -0.43 -7.97 16 4 C 0.10 0.91 5.98 -4.04 -0.02 0.88 16 5 C -0.17 -1.24 10.23 37.16 0.38 -0.86 16 6 C 0.52 8.33 5.47 -10.98 -0.06 8.27 16 7 O -0.51 -10.30 15.42 5.56 0.09 -10.21 16 8 C 0.06 0.94 2.04 -68.86 -0.14 0.80 16 9 H 0.05 0.72 5.58 -51.93 -0.29 0.43 16 10 C -0.14 -1.74 8.72 37.16 0.32 -1.42 16 11 N -0.51 -9.78 4.29 -228.08 -0.98 -10.76 16 12 C 0.06 1.08 5.20 -3.83 -0.02 1.06 16 13 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 14 C 0.05 1.22 2.16 -91.65 -0.20 1.03 16 15 C -0.51 -14.35 8.56 -34.44 -0.29 -14.65 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 18 N -0.89 -26.06 11.37 55.43 0.63 -25.43 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.10 -2.53 5.12 -26.65 -0.14 -2.66 16 24 C 0.06 1.22 5.14 -3.83 -0.02 1.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.08 1.00 7.44 -51.92 -0.39 0.62 16 30 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.08 0.79 5.65 -51.93 -0.29 0.50 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 5.80 -51.93 -0.30 0.20 16 35 H 0.06 0.61 5.80 -51.93 -0.30 0.31 16 36 H 0.07 0.77 6.63 -51.93 -0.34 0.42 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.98 6.13 -51.93 -0.32 0.67 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.54 6.17 -51.93 -0.32 2.22 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.28 6.21 -51.93 -0.32 0.96 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -31.97 355.41 -8.76 -40.73 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.33 Total: -1.13 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.07 Total: -7.37 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.78 Total: -44.15 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.97 -8.76 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397243489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.538 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds