Wall clock time and date at job start Tue Mar 31 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47287 * 2 1 4 4 C 1.46495 * 119.99540 * 272.46567 * 3 2 1 5 5 C 1.53000 * 109.47395 * 275.51256 * 4 3 2 6 6 C 1.34772 * 120.00184 * 92.46696 * 3 2 1 7 7 O 1.21278 * 119.99985 * 353.75711 * 6 3 2 8 8 C 1.50706 * 119.99876 * 173.76007 * 6 3 2 9 9 H 1.08997 * 109.46602 * 25.69024 * 8 6 3 10 10 C 1.53002 * 109.46927 * 265.69045 * 8 6 3 11 11 N 1.46898 * 109.46882 * 145.69297 * 8 6 3 12 12 C 1.46847 * 110.99891 * 179.22580 * 11 8 6 13 13 C 1.53035 * 109.52576 * 185.83785 * 12 11 8 14 14 C 1.53116 * 109.27557 * 300.81850 * 13 12 11 15 15 C 1.50704 * 109.52099 * 177.56099 * 14 13 12 16 16 H 1.07996 * 120.00497 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99894 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99938 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47150 * 89.99969 * 19 17 15 21 21 H 1.48502 * 109.47340 * 209.99964 * 19 17 15 22 22 H 1.48508 * 109.47161 * 329.99918 * 19 17 15 23 23 C 1.53116 * 109.16486 * 57.65359 * 14 13 12 24 24 C 1.46853 * 111.00014 * 303.43237 * 11 8 6 25 25 H 1.08996 * 109.46897 * 184.90655 * 1 2 3 26 26 H 1.09000 * 109.47198 * 304.91370 * 1 2 3 27 27 H 1.09001 * 109.46545 * 64.90265 * 1 2 3 28 28 H 1.08999 * 109.47475 * 239.99530 * 2 1 3 29 29 H 1.09007 * 109.47174 * 119.99391 * 2 1 3 30 30 H 1.09005 * 109.47636 * 35.51283 * 4 3 2 31 31 H 1.09000 * 109.47163 * 155.51040 * 4 3 2 32 32 H 1.08991 * 109.47138 * 60.00006 * 5 4 3 33 33 H 1.09001 * 109.47254 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46990 * 299.99915 * 5 4 3 35 35 H 1.09003 * 109.46958 * 53.52296 * 10 8 6 36 36 H 1.08994 * 109.46875 * 173.52431 * 10 8 6 37 37 H 1.08997 * 109.47003 * 293.52503 * 10 8 6 38 38 H 1.09003 * 109.46219 * 65.81633 * 12 11 8 39 39 H 1.09000 * 109.44910 * 305.84996 * 12 11 8 40 40 H 1.09003 * 109.50486 * 180.87891 * 13 12 11 41 41 H 1.08997 * 109.50470 * 60.76044 * 13 12 11 42 42 H 1.09001 * 109.52481 * 297.74436 * 14 13 12 43 43 H 0.97003 * 120.00070 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.50091 * 62.28003 * 23 14 13 45 45 H 1.08999 * 109.50874 * 182.39923 * 23 14 13 46 46 H 1.09001 * 109.45650 * 294.18066 * 24 11 8 47 47 H 1.08995 * 109.46195 * 54.14553 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2111 2.0900 -1.2676 5 6 3.5878 1.7464 -1.8399 6 6 2.2904 1.9999 1.1661 7 8 2.0250 1.4563 2.2172 8 6 2.9244 3.3671 1.1637 9 1 2.6821 3.8782 0.2320 10 6 4.4427 3.2254 1.2879 11 7 2.4110 4.1468 2.2980 12 6 3.0218 5.4815 2.3385 13 6 2.5763 6.2096 3.6087 14 6 1.0496 6.3261 3.6154 15 6 0.6007 6.9890 4.8923 16 1 1.3305 7.2964 5.6266 17 6 -0.7418 7.2019 5.1234 18 7 -1.6305 6.8271 4.2295 19 14 -1.2982 8.0229 6.7064 20 1 -1.3532 9.4936 6.5084 21 1 -2.6466 7.5224 7.0762 22 1 -0.3371 7.7052 7.7931 23 6 0.4381 4.9253 3.5237 24 6 0.9456 4.2345 2.2560 25 1 -0.3633 -1.0239 0.0879 26 1 -0.3633 0.5882 0.8427 27 1 -0.3632 0.4359 -0.9307 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.4381 1.7876 -1.9742 31 1 2.1466 3.1645 -1.0965 32 1 3.6523 0.6719 -2.0110 33 1 3.7313 2.2740 -2.7828 34 1 4.3607 2.0488 -1.1334 35 1 4.8094 2.5526 0.5126 36 1 4.9096 4.2033 1.1710 37 1 4.6907 2.8193 2.2685 38 1 2.7076 6.0514 1.4640 39 1 4.1074 5.3840 2.3375 40 1 3.0174 7.2061 3.6307 41 1 2.9022 5.6473 4.4837 42 1 0.7259 6.9215 2.7616 43 1 -2.5750 6.9765 4.3923 44 1 0.7305 4.3428 4.3974 45 1 -0.6483 5.0042 3.4851 46 1 0.6412 4.8102 1.3819 47 1 0.5234 3.2315 2.1951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397243489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:36 Heat of formation + Delta-G solvation = -56.398753 kcal Electronic energy + Delta-G solvation = -23979.430446 eV Core-core repulsion = 20775.150697 eV Total energy + Delta-G solvation = -3204.279749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51194 -39.46107 -37.18980 -36.10953 -34.02095 -32.82547 -31.80038 -30.84258 -30.24000 -27.49313 -25.88900 -24.46558 -23.99375 -23.51780 -22.35576 -20.43809 -19.59148 -18.49654 -18.38533 -17.72898 -16.72515 -16.28719 -16.26083 -15.49485 -15.31503 -14.93988 -14.87785 -14.62985 -14.51409 -14.25621 -14.12635 -13.71738 -13.48249 -13.43913 -13.32249 -12.99200 -12.87968 -12.80138 -12.67145 -12.57939 -12.32483 -12.27108 -12.02176 -11.93517 -11.90680 -11.77842 -11.35154 -10.83080 -10.77370 -10.49769 -10.38864 -9.70124 -9.16032 -8.08502 -6.21765 1.39621 1.41237 1.51463 1.60050 1.96652 2.43499 2.96435 3.18528 3.48275 3.85354 4.04021 4.12245 4.15563 4.17429 4.22990 4.29363 4.36878 4.46165 4.48054 4.52893 4.57236 4.70628 4.71725 4.74299 4.82642 4.86991 4.95531 4.97796 5.00462 5.04791 5.05334 5.20023 5.22650 5.26774 5.31269 5.47654 5.55735 5.61032 5.65779 5.96304 5.98386 6.15795 6.26422 6.40076 6.44351 6.89795 7.23948 7.45939 8.96356 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.004328 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.680518 B = 6468.630401 C = 7102.324573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.613 5.613 4 C 0.093 3.907 5 C -0.168 4.168 6 C 0.515 3.485 7 O -0.567 6.567 8 C 0.060 3.940 9 H 0.077 0.923 10 C -0.133 4.133 11 N -0.531 5.531 12 C 0.066 3.934 13 C -0.100 4.100 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.090 4.090 24 C 0.076 3.924 25 H 0.080 0.920 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.032 0.968 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.045 0.955 42 H -0.006 1.006 43 H 0.260 0.740 44 H 0.019 0.981 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.868 -10.960 -16.663 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.347 5.347 4 C -0.029 4.029 5 C -0.226 4.226 6 C 0.303 3.697 7 O -0.445 6.445 8 C -0.051 4.051 9 H 0.094 0.906 10 C -0.190 4.190 11 N -0.257 5.257 12 C -0.061 4.061 13 C -0.138 4.138 14 C 0.028 3.972 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.129 4.129 24 C -0.051 4.051 25 H 0.099 0.901 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.012 0.988 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.037 0.963 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.671 -11.505 -15.721 22.212 hybrid contribution -1.259 0.835 0.458 1.579 sum 9.411 -10.670 -15.263 20.866 Atomic orbital electron populations 1.22087 0.96032 1.02660 1.01356 1.21495 0.94340 0.81867 1.03453 1.48221 1.65339 1.14843 1.06328 1.21918 0.99601 0.97246 0.84132 1.22245 0.95614 1.02818 1.01904 1.20847 0.77498 0.87910 0.83399 1.90682 1.53346 1.67556 1.32890 1.21866 0.97977 0.91232 0.94035 0.90568 1.21835 0.90201 1.04068 1.02942 1.61735 1.05658 1.16273 1.42064 1.22167 0.99735 0.87041 0.97125 1.21551 0.96768 0.98617 0.96870 1.18651 0.91726 0.92018 0.94848 1.21605 0.92299 1.38515 1.04729 0.92985 1.25765 0.97004 0.96263 0.99697 1.70021 1.01399 1.48245 1.36233 0.85619 0.77420 0.78843 0.80157 1.19750 1.21049 1.19468 1.21366 1.00783 0.96595 0.94129 1.21919 0.87526 0.98165 0.97520 0.90070 0.95844 0.91290 0.87205 0.92088 0.88576 0.90299 0.91748 0.89475 0.92445 0.89601 0.89403 0.92823 0.94973 0.88263 0.91915 0.93606 0.98754 0.93142 0.96232 0.92327 0.96251 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.11 2.21 6.13 86.38 0.53 2.74 16 3 N -0.61 -13.91 2.47 -821.79 -2.03 -15.94 16 4 C 0.09 1.37 5.98 86.38 0.52 1.89 16 5 C -0.17 -1.71 10.23 71.98 0.74 -0.97 16 6 C 0.52 16.23 5.47 87.66 0.48 16.71 16 7 O -0.57 -23.66 15.42 -3.02 -0.05 -23.71 16 8 C 0.06 1.72 2.04 44.17 0.09 1.81 16 9 H 0.08 1.86 5.58 -2.39 -0.01 1.85 16 10 C -0.13 -2.95 8.72 71.98 0.63 -2.32 16 11 N -0.53 -20.01 4.29 -875.50 -3.76 -23.77 16 12 C 0.07 2.30 5.20 86.33 0.45 2.75 16 13 C -0.10 -4.31 5.32 30.64 0.16 -4.15 16 14 C 0.05 2.44 2.16 -11.46 -0.02 2.41 16 15 C -0.53 -30.89 8.56 25.60 0.22 -30.68 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 17 C 0.01 0.63 5.31 84.66 0.45 1.08 16 18 N -0.92 -55.35 11.37 21.45 0.24 -55.10 16 19 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.09 -4.79 5.12 30.64 0.16 -4.63 16 24 C 0.08 3.37 5.14 86.32 0.44 3.82 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.36 8.09 -2.39 -0.02 1.34 16 29 H 0.06 1.49 7.44 -2.38 -0.02 1.48 16 30 H 0.10 1.08 8.11 -2.38 -0.02 1.06 16 31 H 0.08 1.25 5.65 -2.39 -0.01 1.24 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.67 5.80 -2.39 -0.01 0.65 16 35 H 0.09 1.45 5.80 -2.39 -0.01 1.44 16 36 H 0.09 1.60 6.63 -2.39 -0.02 1.59 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 2.76 6.13 -2.39 -0.01 2.75 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 3.45 6.17 -2.39 -0.01 3.44 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.05 2.20 6.21 -2.39 -0.01 2.18 16 Total: -1.00 -73.57 355.41 2.93 -70.64 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.92 Total: 12.59 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 5.57 Total: -12.17 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -5.55 Total: -94.81 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.57 2.93 -70.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397243489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.237 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds