Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47108 * 2 1 4 4 C 1.46497 * 120.00608 * 265.28906 * 3 2 1 5 5 C 1.53001 * 109.47047 * 264.09301 * 4 3 2 6 6 C 1.34777 * 119.99244 * 85.29140 * 3 2 1 7 7 O 1.21280 * 120.00723 * 4.54167 * 6 3 2 8 8 C 1.50707 * 119.99673 * 184.53892 * 6 3 2 9 9 H 1.09002 * 109.47220 * 308.30057 * 8 6 3 10 10 C 1.53005 * 109.46862 * 68.29824 * 8 6 3 11 11 N 1.46896 * 109.47047 * 188.30059 * 8 6 3 12 12 C 1.46847 * 111.00236 * 299.20748 * 11 8 6 13 13 C 1.53032 * 109.52766 * 174.16417 * 12 11 8 14 14 C 1.53123 * 109.30877 * 59.15932 * 13 12 11 15 15 C 1.53115 * 109.15956 * 302.40645 * 14 13 12 16 16 H 1.09007 * 109.50501 * 297.63706 * 15 14 13 17 17 C 1.50697 * 109.50296 * 177.55596 * 15 14 13 18 18 H 1.07999 * 120.00050 * 240.35512 * 17 15 14 19 19 C 1.37877 * 119.99918 * 60.08061 * 17 15 14 20 20 N 1.31513 * 120.00217 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00250 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47023 * 89.99602 * 21 19 17 23 23 H 1.48496 * 109.47271 * 209.99751 * 21 19 17 24 24 H 1.48509 * 109.46858 * 330.00028 * 21 19 17 25 25 C 1.46849 * 110.99947 * 175.00552 * 11 8 6 26 26 H 1.09006 * 109.47054 * 299.99943 * 1 2 3 27 27 H 1.09001 * 109.47312 * 59.99580 * 1 2 3 28 28 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47135 * 240.00605 * 2 1 3 30 30 H 1.09001 * 109.47312 * 120.00420 * 2 1 3 31 31 H 1.09000 * 109.46734 * 24.08839 * 4 3 2 32 32 H 1.08992 * 109.47071 * 144.08582 * 4 3 2 33 33 H 1.09001 * 109.46904 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46976 * 299.99390 * 5 4 3 35 35 H 1.08999 * 109.47528 * 59.99434 * 5 4 3 36 36 H 1.08999 * 109.47032 * 186.38864 * 10 8 6 37 37 H 1.08995 * 109.47342 * 306.39086 * 10 8 6 38 38 H 1.09001 * 109.46666 * 66.39217 * 10 8 6 39 39 H 1.09000 * 109.46315 * 294.18575 * 12 11 8 40 40 H 1.09008 * 109.45898 * 54.14329 * 12 11 8 41 41 H 1.09000 * 109.50475 * 179.12505 * 13 12 11 42 42 H 1.09005 * 109.49951 * 299.20478 * 13 12 11 43 43 H 1.09007 * 109.55416 * 182.48525 * 14 13 12 44 44 H 1.08996 * 109.49286 * 62.29568 * 14 13 12 45 45 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.46629 * 65.81797 * 25 11 8 47 47 H 1.09008 * 109.45933 * 305.85550 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3607 2.0373 -1.2643 5 6 3.8653 1.9122 -1.5126 6 6 2.1525 2.0484 1.1634 7 8 1.9483 1.4804 2.2153 8 6 2.5565 3.5003 1.1570 9 1 3.4555 3.6247 0.5533 10 6 1.4242 4.3421 0.5651 11 7 2.8257 3.9396 2.5327 12 6 1.6287 3.8037 3.3724 13 6 1.9830 4.1307 4.8248 14 6 2.5253 5.5604 4.9042 15 6 3.7416 5.6884 3.9830 16 1 4.5291 5.0165 4.3246 17 6 4.2454 7.1084 4.0092 18 1 4.2709 7.6892 3.0991 19 6 4.6685 7.6680 5.1962 20 7 4.6328 6.9624 6.3054 21 14 5.2936 9.4280 5.2287 22 1 4.1594 10.3515 5.4849 23 1 6.3045 9.5745 6.3066 24 1 5.9140 9.7571 3.9201 25 6 3.3363 5.3163 2.5550 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8170 1.5604 -2.0799 32 1 2.0873 3.0910 -1.2126 33 1 4.1200 2.3999 -2.4536 34 1 4.4089 2.3890 -0.6971 35 1 4.1387 0.8583 -1.5643 36 1 1.7577 5.3740 0.4553 37 1 1.1474 3.9439 -0.4110 38 1 0.5607 4.3081 1.2295 39 1 0.8595 4.4921 3.0223 40 1 1.2560 2.7812 3.3107 41 1 1.0908 4.0448 5.4451 42 1 2.7418 3.4334 5.1800 43 1 2.8202 5.7823 5.9299 44 1 1.7526 6.2606 4.5867 45 1 4.9301 7.3562 7.1405 46 1 2.5591 5.9977 2.2089 47 1 4.2040 5.3925 1.8996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397685540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -28.372071 kcal Electronic energy + Delta-G solvation = -24040.667026 eV Core-core repulsion = 20837.602605 eV Total energy + Delta-G solvation = -3203.064420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42044 -37.96247 -36.11358 -34.31613 -32.57199 -31.81537 -29.81443 -29.64533 -28.69777 -25.21716 -24.86077 -23.68869 -23.19818 -21.48781 -21.12084 -18.84199 -18.27291 -16.96872 -16.54211 -16.06312 -15.42881 -14.88186 -14.55690 -14.40462 -14.05846 -13.85778 -13.60968 -13.42862 -13.11420 -12.86430 -12.72484 -12.52518 -12.35383 -12.10809 -11.98493 -11.83970 -11.74404 -11.51235 -11.29433 -11.06537 -10.89403 -10.86203 -10.61697 -10.54125 -9.95688 -9.71677 -9.53380 -9.29571 -8.78940 -8.69550 -8.58010 -8.21439 -7.52776 -5.91381 -3.98004 2.79031 2.92293 3.33716 3.40519 3.43026 4.40679 4.50312 4.59826 4.73618 4.93120 4.96971 5.11838 5.13135 5.23501 5.25100 5.29239 5.38308 5.46153 5.54360 5.62140 5.70662 5.79309 5.84244 5.97576 6.00307 6.01097 6.05558 6.20730 6.28507 6.45042 6.50644 6.57114 6.67561 6.87262 6.97136 7.06279 7.31144 7.36310 7.52653 7.78771 7.81519 7.90371 8.16467 8.25729 8.38398 8.54598 9.06265 9.65836 11.14374 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.004182 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.871571 B = 6693.215478 C = 7236.520306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.619 5.619 4 C 0.093 3.907 5 C -0.175 4.175 6 C 0.525 3.475 7 O -0.515 6.515 8 C 0.063 3.937 9 H 0.101 0.899 10 C -0.189 4.189 11 N -0.516 5.516 12 C 0.044 3.956 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.887 5.887 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.067 3.933 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.016 0.984 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.259 0.741 46 H 0.022 0.978 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -11.076 -16.365 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.355 5.355 4 C -0.030 4.030 5 C -0.233 4.233 6 C 0.313 3.687 7 O -0.389 6.389 8 C -0.049 4.049 9 H 0.118 0.882 10 C -0.248 4.248 11 N -0.239 5.239 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.148 4.148 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.059 4.059 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.676 -11.678 -15.384 20.436 hybrid contribution -0.262 1.570 -0.439 1.651 sum -6.938 -10.109 -15.823 20.017 Atomic orbital electron populations 1.22128 0.96142 1.01960 1.02270 1.21350 0.94138 0.82682 1.02825 1.48075 1.66797 1.14043 1.06576 1.21845 0.95998 0.99367 0.85753 1.22257 0.96186 1.02478 1.02361 1.20728 0.76121 0.88976 0.82892 1.90580 1.49045 1.69070 1.30218 1.21675 0.98682 0.90875 0.93684 0.88171 1.22587 0.99740 1.01389 1.01099 1.62029 1.31484 1.25175 1.05261 1.22493 0.90095 1.01630 0.94064 1.21622 0.99534 0.99991 0.94006 1.21655 0.97231 0.91664 1.04280 1.18649 0.93961 0.95761 0.87929 0.94782 1.21141 1.42255 0.97814 0.94094 0.92908 1.24934 0.95684 0.97490 0.95726 1.69904 1.47523 1.36260 0.98886 0.86644 0.78615 0.85351 0.77637 1.20842 1.21280 1.20002 1.22360 0.97182 0.84729 1.01653 0.92149 0.92822 0.91826 0.90870 0.90106 0.90464 0.89325 0.91447 0.91828 0.92398 0.90897 0.91671 0.91601 0.96574 0.88793 0.93838 0.92193 0.89280 0.95380 0.93097 0.95981 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.21 37.15 0.38 -1.13 16 2 C 0.11 1.11 6.09 -4.04 -0.02 1.09 16 3 N -0.62 -7.02 2.50 -173.69 -0.43 -7.45 16 4 C 0.09 0.77 5.62 -4.04 -0.02 0.74 16 5 C -0.17 -1.40 10.08 37.16 0.37 -1.03 16 6 C 0.52 8.03 6.72 -10.98 -0.07 7.96 16 7 O -0.51 -9.76 13.20 5.56 0.07 -9.68 16 8 C 0.06 0.98 1.96 -68.86 -0.14 0.84 16 9 H 0.10 1.42 6.24 -51.93 -0.32 1.10 16 10 C -0.19 -2.48 8.13 37.16 0.30 -2.18 16 11 N -0.52 -10.17 4.49 -228.07 -1.02 -11.19 16 12 C 0.04 0.88 4.50 -3.84 -0.02 0.87 16 13 C -0.11 -2.48 6.09 -26.65 -0.16 -2.64 16 14 C -0.11 -2.74 5.03 -26.61 -0.13 -2.88 16 15 C 0.06 1.44 2.26 -91.70 -0.21 1.23 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.84 11.36 55.43 0.63 -25.21 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.07 1.45 4.25 -3.83 -0.02 1.44 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 30 H 0.08 0.95 7.51 -51.93 -0.39 0.56 16 31 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 32 H 0.09 0.72 4.31 -51.93 -0.22 0.49 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.63 6.77 -51.93 -0.35 0.28 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.97 6.98 -51.93 -0.36 0.61 16 37 H 0.06 0.66 5.36 -51.93 -0.28 0.38 16 38 H 0.07 0.95 6.19 -51.93 -0.32 0.63 16 39 H 0.02 0.31 6.48 -51.93 -0.34 -0.02 16 40 H 0.09 1.90 5.03 -51.92 -0.26 1.64 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 46 H 0.02 0.47 6.88 -51.93 -0.36 0.11 16 47 H 0.06 1.19 8.08 -51.92 -0.42 0.77 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -31.27 348.57 -8.78 -40.05 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.13 Total: 0.40 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.13 Total: -8.58 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.83 Total: -43.86 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.27 -8.78 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397685540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.676 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds