Wall clock time and date at job start Tue Mar 31 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47449 * 2 1 4 4 C 1.46500 * 119.99991 * 269.99929 * 3 2 1 5 5 C 1.53008 * 109.46871 * 275.00237 * 4 3 2 6 6 C 1.34777 * 120.00030 * 89.99835 * 3 2 1 7 7 O 1.21280 * 120.00194 * 354.86693 * 6 3 2 8 8 C 1.50701 * 120.00192 * 174.86165 * 6 3 2 9 9 H 1.09006 * 109.46752 * 330.72286 * 8 6 3 10 10 C 1.53003 * 109.46982 * 90.71686 * 8 6 3 11 11 N 1.46896 * 109.47531 * 210.72058 * 8 6 3 12 12 C 1.46849 * 110.99353 * 55.01868 * 11 8 6 13 13 C 1.53031 * 109.51565 * 185.85235 * 12 11 8 14 14 C 1.53119 * 109.27748 * 300.81313 * 13 12 11 15 15 C 1.53127 * 109.15980 * 57.65665 * 14 13 12 16 16 H 1.09001 * 109.53603 * 62.30638 * 15 14 13 17 17 C 1.50699 * 109.50431 * 182.40267 * 15 14 13 18 18 H 1.07995 * 120.00078 * 119.80371 * 17 15 14 19 19 C 1.37875 * 119.99903 * 299.80243 * 17 15 14 20 20 N 1.31515 * 120.00265 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99967 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46931 * 119.99966 * 21 19 17 24 24 H 1.48499 * 109.47206 * 239.99805 * 21 19 17 25 25 C 1.46850 * 111.00066 * 179.22686 * 11 8 6 26 26 H 1.09002 * 109.46568 * 59.99692 * 1 2 3 27 27 H 1.08995 * 109.47787 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 300.00346 * 1 2 3 29 29 H 1.09006 * 109.46730 * 239.99477 * 2 1 3 30 30 H 1.09002 * 109.46568 * 120.00308 * 2 1 3 31 31 H 1.08999 * 109.47039 * 34.99791 * 4 3 2 32 32 H 1.09001 * 109.47326 * 155.00321 * 4 3 2 33 33 H 1.08997 * 109.46767 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46925 * 299.99624 * 5 4 3 35 35 H 1.09001 * 109.47076 * 59.99932 * 5 4 3 36 36 H 1.09001 * 109.47039 * 65.41807 * 10 8 6 37 37 H 1.08999 * 109.46967 * 185.42053 * 10 8 6 38 38 H 1.09002 * 109.46780 * 305.42309 * 10 8 6 39 39 H 1.09006 * 109.46596 * 65.83633 * 12 11 8 40 40 H 1.09004 * 109.46039 * 305.86725 * 12 11 8 41 41 H 1.08997 * 109.50180 * 180.87858 * 13 12 11 42 42 H 1.09000 * 109.50692 * 60.75467 * 13 12 11 43 43 H 1.08998 * 109.52905 * 297.74988 * 14 13 12 44 44 H 1.09001 * 109.52102 * 177.55671 * 14 13 12 45 45 H 0.97007 * 120.00403 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.46397 * 54.14286 * 25 11 8 47 47 H 1.09005 * 109.45846 * 294.16114 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6662 1.7303 -1.7732 6 6 2.2430 2.0165 1.1672 7 8 1.9535 1.4796 2.2154 8 6 2.8541 3.3940 1.1699 9 1 3.4978 3.5076 0.2975 10 6 1.7431 4.4449 1.1242 11 7 3.6492 3.5747 2.3918 12 6 4.6520 2.5108 2.5292 13 6 5.3601 2.6469 3.8790 14 6 6.0316 4.0206 3.9613 15 6 4.9731 5.1099 3.7667 16 1 4.2383 5.0516 4.5696 17 6 5.6347 6.4637 3.7874 18 1 5.5653 7.1119 2.9264 19 6 6.3285 6.8749 4.9057 20 7 6.4126 6.0858 5.9544 21 14 7.1492 8.5528 4.9311 22 1 6.9077 9.2415 3.6379 23 1 6.5816 9.3647 6.0375 24 1 8.6102 8.3861 5.1386 25 6 4.2761 4.9024 2.4202 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5245 1.7521 -2.0043 32 1 2.1827 3.1482 -1.1177 33 1 3.8481 2.2444 -2.7170 34 1 4.4044 2.0499 -1.0377 35 1 3.7461 0.6537 -1.9242 36 1 1.1573 4.3945 2.0420 37 1 2.1848 5.4368 1.0290 38 1 1.0955 4.2519 0.2689 39 1 5.3833 2.5949 1.7252 40 1 4.1608 1.5393 2.4730 41 1 6.1151 1.8666 3.9741 42 1 4.6315 2.5493 4.6837 43 1 6.7878 4.1039 3.1807 44 1 6.5006 4.1388 4.9381 45 1 6.9011 6.3749 6.7411 46 1 3.5121 5.6678 2.2850 47 1 5.0093 4.9749 1.6168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397685543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:41 Heat of formation + Delta-G solvation = -39.831603 kcal Electronic energy + Delta-G solvation = -23996.804048 eV Core-core repulsion = 20793.242705 eV Total energy + Delta-G solvation = -3203.561343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31838 -37.91072 -36.10048 -34.24592 -32.57739 -31.93649 -29.85860 -29.76973 -28.97697 -25.30365 -24.47144 -23.79606 -23.13269 -21.35477 -21.03953 -18.69962 -18.62874 -17.14220 -16.63622 -16.09224 -15.56854 -14.77906 -14.50106 -14.25852 -14.08185 -14.00664 -13.52224 -13.22024 -13.00742 -12.79576 -12.69941 -12.60514 -12.37200 -12.29272 -12.10481 -11.86722 -11.60893 -11.40232 -11.26608 -11.16621 -11.06522 -10.93664 -10.64467 -10.59666 -10.00924 -9.80740 -9.57289 -9.27307 -8.97416 -8.73219 -8.63203 -8.25984 -7.60790 -5.93364 -3.99789 2.77402 2.92158 3.32099 3.40132 3.43233 4.35055 4.50502 4.54413 4.70427 4.91673 4.98180 5.13696 5.16231 5.26254 5.28002 5.36064 5.36914 5.44001 5.56198 5.62751 5.66552 5.79035 5.84462 5.86451 5.94273 6.01358 6.05929 6.15957 6.30390 6.34785 6.43562 6.52574 6.57138 6.80691 6.82962 7.01538 7.28434 7.31739 7.46634 7.70652 7.78572 7.83536 8.13757 8.22646 8.36683 8.51995 9.04573 9.64282 11.12626 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.004095 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.394752 B = 6836.509825 C = 7071.398116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.622 5.622 4 C 0.103 3.897 5 C -0.173 4.173 6 C 0.522 3.478 7 O -0.513 6.513 8 C 0.065 3.935 9 H 0.052 0.948 10 C -0.140 4.140 11 N -0.515 5.515 12 C 0.062 3.938 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.055 3.945 16 H 0.036 0.964 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.063 3.937 20 N -0.887 5.887 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.067 3.933 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.017 0.983 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.090 0.910 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 -9.859 -15.998 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.358 5.358 4 C -0.020 4.020 5 C -0.231 4.231 6 C 0.309 3.691 7 O -0.386 6.386 8 C -0.047 4.047 9 H 0.070 0.930 10 C -0.198 4.198 11 N -0.241 5.241 12 C -0.066 4.066 13 C -0.152 4.152 14 C -0.148 4.148 15 C 0.036 3.964 16 H 0.054 0.946 17 C -0.553 4.553 18 H 0.072 0.928 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.787 -10.189 -14.832 20.026 hybrid contribution 1.110 0.909 -0.829 1.657 sum -7.677 -9.279 -15.661 19.756 Atomic orbital electron populations 1.22117 0.96087 1.01932 1.02323 1.21337 0.94303 0.82598 1.02726 1.48130 1.67301 1.14212 1.06126 1.21598 0.97018 0.98004 0.85423 1.22229 0.97211 1.02116 1.01585 1.20739 0.77849 0.87508 0.82958 1.90689 1.49858 1.67088 1.31001 1.21639 0.96587 0.92327 0.94179 0.93017 1.21797 0.97288 0.98223 1.02472 1.61880 1.25071 1.04191 1.32969 1.22092 0.92358 0.94243 0.97928 1.21630 0.98476 0.99227 0.95850 1.21657 0.98430 0.91767 1.02945 1.18667 0.93344 0.93578 0.90769 0.94604 1.21169 1.32914 1.00880 1.00295 0.92806 1.24936 0.96351 0.96985 0.95573 1.69914 1.42211 1.35948 1.04491 0.86584 0.79160 0.84566 0.77930 1.19885 1.21063 1.21146 1.22411 0.96086 0.86948 1.00475 0.92839 0.91882 0.92002 0.90975 0.90111 0.90576 0.89856 0.91431 0.92184 0.92354 0.90777 0.90882 0.92641 0.96495 0.91851 0.93667 0.91878 0.95273 0.89130 0.93130 0.91705 0.96361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 37.16 0.38 -1.15 16 2 C 0.11 1.15 6.11 -4.04 -0.02 1.13 16 3 N -0.62 -7.29 2.47 -173.68 -0.43 -7.72 16 4 C 0.10 0.89 5.71 -4.04 -0.02 0.87 16 5 C -0.17 -1.43 10.09 37.16 0.38 -1.05 16 6 C 0.52 8.18 5.62 -10.98 -0.06 8.12 16 7 O -0.51 -10.03 15.06 5.56 0.08 -9.94 16 8 C 0.06 1.02 1.62 -68.86 -0.11 0.91 16 9 H 0.05 0.75 5.94 -51.93 -0.31 0.44 16 10 C -0.14 -1.95 8.56 37.16 0.32 -1.64 16 11 N -0.52 -10.17 4.29 -228.08 -0.98 -11.15 16 12 C 0.06 1.21 5.10 -3.84 -0.02 1.19 16 13 C -0.11 -2.43 6.09 -26.65 -0.16 -2.59 16 14 C -0.11 -2.69 5.03 -26.60 -0.13 -2.82 16 15 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 16 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.64 11.36 55.43 0.63 -25.01 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.07 1.44 4.45 -3.83 -0.02 1.42 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 31 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 32 H 0.08 0.72 5.39 -51.93 -0.28 0.44 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 38 H 0.05 0.61 7.25 -51.93 -0.38 0.23 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 1.24 5.95 -51.93 -0.31 0.93 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.06 1.34 6.15 -51.93 -0.32 1.02 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -31.22 357.09 -8.90 -40.12 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.49 Total: -0.78 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.08 Total: -7.20 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.78 Total: -43.88 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.22 -8.90 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397685543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.285 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds