Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47469 * 2 1 4 4 C 1.46505 * 119.99856 * 270.00671 * 3 2 1 5 5 C 1.52998 * 109.46809 * 276.96286 * 4 3 2 6 6 C 1.34773 * 120.00175 * 89.99914 * 3 2 1 7 7 O 1.21281 * 119.99582 * 4.28145 * 6 3 2 8 8 C 1.50700 * 120.00246 * 184.28088 * 6 3 2 9 9 H 1.09001 * 109.46561 * 36.83397 * 8 6 3 10 10 C 1.52992 * 109.47099 * 276.83060 * 8 6 3 11 11 N 1.46897 * 109.47127 * 156.83108 * 8 6 3 12 12 C 1.46847 * 110.99991 * 66.04529 * 11 8 6 13 13 C 1.53037 * 109.51305 * 174.15349 * 12 11 8 14 14 C 1.53121 * 109.27825 * 59.18978 * 13 12 11 15 15 C 1.53113 * 109.15921 * 302.34181 * 14 13 12 16 16 H 1.09001 * 109.50565 * 297.67653 * 15 14 13 17 17 C 1.50701 * 109.50532 * 177.59811 * 15 14 13 18 18 H 1.08007 * 119.99679 * 240.00375 * 17 15 14 19 19 C 1.37873 * 120.00434 * 59.99805 * 17 15 14 20 20 N 1.31519 * 119.99423 * 0.02562 * 19 17 15 21 21 Si 1.86791 * 120.00436 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47079 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47412 * 120.00232 * 21 19 17 24 24 H 1.48502 * 109.47347 * 240.00186 * 21 19 17 25 25 C 1.46854 * 110.99294 * 301.84271 * 11 8 6 26 26 H 1.09003 * 109.46376 * 299.99984 * 1 2 3 27 27 H 1.08997 * 109.46833 * 59.99397 * 1 2 3 28 28 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47221 * 240.00261 * 2 1 3 30 30 H 1.09003 * 109.47487 * 120.00007 * 2 1 3 31 31 H 1.09000 * 109.47314 * 36.96480 * 4 3 2 32 32 H 1.08995 * 109.46643 * 156.96619 * 4 3 2 33 33 H 1.09000 * 109.47577 * 189.69257 * 5 4 3 34 34 H 1.08997 * 109.47250 * 309.69718 * 5 4 3 35 35 H 1.09007 * 109.47153 * 69.69309 * 5 4 3 36 36 H 1.09002 * 109.46944 * 71.00694 * 10 8 6 37 37 H 1.08994 * 109.47157 * 191.00371 * 10 8 6 38 38 H 1.09002 * 109.47435 * 311.00661 * 10 8 6 39 39 H 1.08997 * 109.46182 * 54.14422 * 12 11 8 40 40 H 1.08996 * 109.46431 * 294.16641 * 12 11 8 41 41 H 1.09004 * 109.50063 * 179.12786 * 13 12 11 42 42 H 1.08993 * 109.50621 * 299.20661 * 13 12 11 43 43 H 1.09003 * 109.52435 * 62.24743 * 14 13 12 44 44 H 1.09002 * 109.52185 * 182.37755 * 14 13 12 45 45 H 0.97003 * 120.00050 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47026 * 65.83607 * 25 11 8 47 47 H 1.08992 * 109.45283 * 305.85716 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6469 1.6921 -1.7980 6 6 2.2431 2.0166 1.1672 7 8 2.1157 1.4211 2.2160 8 6 2.6526 3.4669 1.1690 9 1 2.1295 3.9930 0.3704 10 6 4.1625 3.5707 0.9447 11 7 2.3069 4.0716 2.4623 12 6 3.1016 3.4828 3.5478 13 6 2.8219 4.2339 4.8515 14 6 1.3289 4.1406 5.1783 15 6 0.5221 4.7160 4.0112 16 1 0.7680 5.7702 3.8834 17 6 -0.9504 4.5743 4.2991 18 1 -1.5777 3.9989 3.6343 19 6 -1.4968 5.1791 5.4112 20 7 -0.7329 5.8800 6.2204 21 14 -3.3217 5.0028 5.7684 22 1 -3.9546 4.1713 4.7134 23 1 -3.5068 4.3517 7.0901 24 1 -3.9548 6.3460 5.7855 25 6 0.8684 3.9511 2.7317 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5033 1.7788 -1.9939 32 1 2.2170 3.1493 -1.1105 33 1 3.9001 2.3305 -2.6444 34 1 4.3867 1.8250 -1.0086 35 1 3.6403 0.6501 -2.1180 36 1 4.3958 3.3043 -0.0861 37 1 4.4892 4.5923 1.1388 38 1 4.6781 2.8895 1.6217 39 1 4.1614 3.5594 3.3047 40 1 2.8314 2.4338 3.6678 41 1 3.4001 3.7869 5.6602 42 1 3.1052 5.2801 4.7368 43 1 1.0541 3.0970 5.3317 44 1 1.1180 4.7097 6.0837 45 1 -1.1173 6.3058 7.0027 46 1 0.6088 2.8997 2.8557 47 1 0.3064 4.3678 1.8960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397685545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -34.162695 kcal Electronic energy + Delta-G solvation = -24359.220511 eV Core-core repulsion = 21155.904990 eV Total energy + Delta-G solvation = -3203.315521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48702 -37.76110 -35.98788 -34.29283 -32.49222 -31.70811 -30.04816 -29.67276 -28.85935 -25.15462 -24.44649 -23.63381 -23.13707 -21.61890 -20.85238 -18.79084 -18.39861 -17.10551 -16.71167 -16.07850 -15.25487 -14.86133 -14.47621 -14.28767 -14.19215 -13.85275 -13.72745 -13.18960 -12.98801 -12.76658 -12.57347 -12.38396 -12.24887 -12.13772 -11.98294 -11.72622 -11.56116 -11.47766 -11.30606 -11.02624 -10.90505 -10.84379 -10.54968 -10.48684 -9.95374 -9.82242 -9.58621 -9.33449 -8.91036 -8.65842 -8.58323 -8.20351 -7.41227 -5.88956 -3.94297 2.81430 3.03600 3.34959 3.42559 3.46733 4.39804 4.53167 4.63190 4.73325 4.94884 5.07465 5.10891 5.20668 5.23848 5.33441 5.38166 5.41053 5.47607 5.57172 5.63095 5.71125 5.80828 5.92162 5.96881 5.98720 6.12922 6.19002 6.21336 6.31679 6.50947 6.59722 6.61987 6.71712 6.91617 6.99292 7.09883 7.34587 7.42468 7.53634 7.74804 7.83691 7.90254 8.19727 8.28283 8.40454 8.58930 9.09473 9.69145 11.17072 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.005202 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.541730 B = 5381.315886 C = 6224.221268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.618 5.618 4 C 0.101 3.899 5 C -0.174 4.174 6 C 0.489 3.511 7 O -0.525 6.525 8 C 0.062 3.938 9 H 0.098 0.902 10 C -0.145 4.145 11 N -0.509 5.509 12 C 0.040 3.960 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.058 3.942 16 H 0.031 0.969 17 C -0.510 4.510 18 H 0.052 0.948 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.059 3.941 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.036 0.964 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -7.997 -15.986 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.353 5.353 4 C -0.022 4.022 5 C -0.233 4.233 6 C 0.277 3.723 7 O -0.400 6.400 8 C -0.050 4.050 9 H 0.116 0.884 10 C -0.202 4.202 11 N -0.232 5.232 12 C -0.088 4.088 13 C -0.153 4.153 14 C -0.146 4.146 15 C 0.039 3.961 16 H 0.050 0.950 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.068 4.068 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.243 -7.700 -15.251 19.424 hybrid contribution -1.323 -0.987 0.114 1.655 sum 7.920 -8.687 -15.137 19.165 Atomic orbital electron populations 1.22125 0.95958 1.01962 1.02560 1.21338 0.94339 0.83041 1.02562 1.48343 1.66599 1.14115 1.06289 1.21601 0.97027 0.98088 0.85513 1.22329 0.97436 1.01912 1.01578 1.22479 0.76213 0.90549 0.83083 1.90640 1.51083 1.67798 1.30488 1.21986 0.97923 0.88753 0.96387 0.88450 1.21944 0.93108 1.03644 1.01513 1.62596 1.07889 1.52802 0.99918 1.22420 0.95718 0.99218 0.91396 1.21656 0.99590 0.99453 0.94627 1.21609 0.90637 0.99546 1.02833 1.18622 0.94123 0.95036 0.88309 0.95041 1.21179 0.93344 1.31518 1.08818 0.93006 1.24920 0.97536 0.95201 0.96191 1.69915 1.34651 1.33794 1.14416 0.86593 0.85927 0.77687 0.78114 1.19942 1.21114 1.21089 1.22420 0.84286 0.99782 1.00310 0.91903 0.92775 0.91888 0.91198 0.90094 0.90774 0.89647 0.91445 0.91671 0.92580 0.91745 0.90395 0.92254 0.92848 0.91519 0.93762 0.92638 0.95091 0.89363 0.93222 0.94527 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.11 1.26 6.18 -4.04 -0.02 1.24 16 3 N -0.62 -7.67 2.48 -173.68 -0.43 -8.10 16 4 C 0.10 0.89 5.75 -4.04 -0.02 0.87 16 5 C -0.17 -1.24 9.63 37.16 0.36 -0.89 16 6 C 0.49 7.87 5.98 -10.99 -0.07 7.81 16 7 O -0.52 -10.58 11.75 5.56 0.07 -10.51 16 8 C 0.06 0.95 2.06 -68.87 -0.14 0.81 16 9 H 0.10 1.34 6.29 -51.93 -0.33 1.02 16 10 C -0.14 -1.75 8.20 37.15 0.30 -1.44 16 11 N -0.51 -9.91 4.70 -228.09 -1.07 -10.98 16 12 C 0.04 0.78 4.70 -3.83 -0.02 0.76 16 13 C -0.12 -2.47 6.09 -26.65 -0.16 -2.63 16 14 C -0.11 -2.76 5.02 -26.61 -0.13 -2.89 16 15 C 0.06 1.53 2.26 -91.69 -0.21 1.32 16 16 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 17 C -0.51 -14.63 8.56 -34.44 -0.29 -14.92 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -26.16 11.35 55.43 0.63 -25.53 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.06 1.34 4.20 -3.83 -0.02 1.33 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.08 1.08 7.37 -51.93 -0.38 0.70 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.09 0.74 5.63 -51.93 -0.29 0.44 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.53 6.08 -51.93 -0.32 0.22 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.77 6.84 -51.93 -0.36 0.41 16 39 H 0.05 0.92 6.12 -51.93 -0.32 0.61 16 40 H 0.07 1.45 5.39 -51.93 -0.28 1.18 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.04 0.91 6.24 -51.93 -0.32 0.58 16 47 H 0.05 1.13 8.12 -51.93 -0.42 0.71 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -32.01 348.20 -8.92 -40.93 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.20 Total: 0.50 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.14 Total: -8.50 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.87 Total: -44.62 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.01 -8.92 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397685545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.771 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds