Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47045 * 2 1 4 4 C 1.46501 * 119.99748 * 265.26187 * 3 2 1 5 5 C 1.53000 * 109.47018 * 276.66806 * 4 3 2 6 6 C 1.34775 * 119.99867 * 85.26282 * 3 2 1 7 7 O 1.21276 * 120.00273 * 6.15289 * 6 3 2 8 8 C 1.50701 * 119.99593 * 186.15057 * 6 3 2 9 9 H 1.09001 * 109.47374 * 49.12158 * 8 6 3 10 10 C 1.52998 * 109.47365 * 289.11375 * 8 6 3 11 11 N 1.46905 * 109.46840 * 169.11205 * 8 6 3 12 12 C 1.46852 * 110.99699 * 65.79517 * 11 8 6 13 13 C 1.53041 * 109.52232 * 185.84136 * 12 11 8 14 14 C 1.53117 * 109.27610 * 300.81406 * 13 12 11 15 15 C 1.53123 * 109.16102 * 57.65788 * 14 13 12 16 16 H 1.08995 * 109.53789 * 62.30112 * 15 14 13 17 17 C 1.50696 * 109.50571 * 182.40658 * 15 14 13 18 18 H 1.08000 * 120.00327 * 119.52661 * 17 15 14 19 19 C 1.37881 * 120.00046 * 299.80089 * 17 15 14 20 20 N 1.31508 * 120.00227 * 180.02562 * 19 17 15 21 21 Si 1.86805 * 119.99521 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.47167 * 90.00163 * 21 19 17 23 23 H 1.48505 * 109.46655 * 209.99889 * 21 19 17 24 24 H 1.48499 * 109.47365 * 329.99870 * 21 19 17 25 25 C 1.46849 * 111.00044 * 189.99833 * 11 8 6 26 26 H 1.08994 * 109.47091 * 304.93141 * 1 2 3 27 27 H 1.09000 * 109.47125 * 64.93034 * 1 2 3 28 28 H 1.09004 * 109.47197 * 184.92851 * 1 2 3 29 29 H 1.08997 * 109.47327 * 240.00035 * 2 1 3 30 30 H 1.09004 * 109.47204 * 119.99735 * 2 1 3 31 31 H 1.08999 * 109.47251 * 36.67531 * 4 3 2 32 32 H 1.09009 * 109.46481 * 156.67095 * 4 3 2 33 33 H 1.08998 * 109.46842 * 307.75875 * 5 4 3 34 34 H 1.08995 * 109.46786 * 67.76343 * 5 4 3 35 35 H 1.09000 * 109.46529 * 187.75884 * 5 4 3 36 36 H 1.08998 * 109.46899 * 309.26902 * 10 8 6 37 37 H 1.08994 * 109.46839 * 69.27029 * 10 8 6 38 38 H 1.08996 * 109.47098 * 189.27139 * 10 8 6 39 39 H 1.09000 * 109.45963 * 305.84871 * 12 11 8 40 40 H 1.08992 * 109.46747 * 65.82056 * 12 11 8 41 41 H 1.08995 * 109.50524 * 60.75473 * 13 12 11 42 42 H 1.08995 * 109.50318 * 180.87737 * 13 12 11 43 43 H 1.09000 * 109.52426 * 297.75347 * 14 13 12 44 44 H 1.08998 * 109.52246 * 177.56155 * 14 13 12 45 45 H 0.97000 * 119.99638 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.45870 * 54.14688 * 25 11 8 47 47 H 1.09001 * 109.46012 * 294.18033 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3613 2.0369 -1.2644 5 6 3.7850 1.6501 -1.6697 6 6 2.1521 2.0487 1.1632 7 8 1.9759 1.4734 2.2162 8 6 2.5205 3.5099 1.1553 9 1 1.8741 4.0439 0.4589 10 6 3.9789 3.6659 0.7197 11 7 2.3505 4.0650 2.5048 12 6 3.3048 3.4638 3.4452 13 6 3.0042 3.9551 4.8631 14 6 3.1132 5.4819 4.9027 15 6 2.1441 6.0816 3.8801 16 1 1.1215 5.8154 4.1472 17 6 2.2875 7.5817 3.8706 18 1 2.5856 8.0901 2.9656 19 6 2.0434 8.3049 5.0190 20 7 2.1680 9.6140 5.0107 21 14 1.5343 7.4249 6.5862 22 1 2.7449 7.0650 7.3673 23 1 0.6696 8.3192 7.3973 24 1 0.7838 6.1913 6.2399 25 6 2.4696 5.5286 2.4907 26 1 -0.3633 0.5884 0.8425 27 1 -0.3633 0.4354 -0.9308 28 1 -0.3634 -1.0239 0.0883 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6638 1.7190 -2.0394 32 1 2.2996 3.1182 -1.1413 33 1 4.4640 1.8420 -0.8389 34 1 3.8147 0.5912 -1.9262 35 1 4.0904 2.2417 -2.5327 36 1 4.6082 3.0028 1.3133 37 1 4.0725 3.4078 -0.3351 38 1 4.2948 4.6981 0.8707 39 1 3.2140 2.3781 3.4103 40 1 4.3187 3.7524 3.1681 41 1 1.9954 3.6549 5.1460 42 1 3.7223 3.5209 5.5586 43 1 4.1324 5.7808 4.6576 44 1 2.8576 5.8395 5.9001 45 1 1.9966 10.1226 5.8187 46 1 1.7723 5.9426 1.7624 47 1 3.4875 5.8075 2.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397685547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = -24.285649 kcal Electronic energy + Delta-G solvation = -24099.725841 eV Core-core repulsion = 20896.838621 eV Total energy + Delta-G solvation = -3202.887220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49439 -38.21345 -36.21562 -34.54312 -32.61616 -31.96277 -30.18932 -29.83751 -29.08562 -25.22601 -24.86103 -23.77777 -23.46082 -21.73094 -21.12215 -18.78241 -18.49349 -17.08479 -16.83319 -16.46183 -15.57101 -15.08976 -14.63058 -14.49421 -14.15161 -13.89825 -13.70668 -13.62987 -13.26102 -12.91854 -12.80261 -12.74833 -12.43539 -12.26098 -12.19351 -12.06113 -11.86862 -11.54291 -11.38127 -11.22664 -11.14480 -10.92732 -10.87777 -10.34332 -10.00246 -9.89915 -9.65423 -9.51041 -8.96962 -8.85748 -8.69453 -8.46015 -7.70226 -6.02739 -4.01492 2.72295 2.85948 3.34389 3.45210 3.50631 4.32578 4.48200 4.49901 4.64069 4.86817 4.93665 5.06982 5.09435 5.15221 5.18861 5.25366 5.30109 5.38437 5.50061 5.59872 5.60017 5.65306 5.69674 5.74105 5.80234 5.88091 5.99363 6.04678 6.09695 6.15895 6.30681 6.37888 6.42302 6.52719 6.65450 6.73409 6.89866 6.95667 7.24713 7.30039 7.50346 7.65893 7.71907 7.92787 8.29981 8.56352 8.99965 9.60848 11.10414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.004409 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.719453 B = 6348.625690 C = 6689.436756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.619 5.619 4 C 0.101 3.899 5 C -0.179 4.179 6 C 0.525 3.475 7 O -0.517 6.517 8 C 0.066 3.934 9 H 0.101 0.899 10 C -0.195 4.195 11 N -0.520 5.520 12 C 0.053 3.947 13 C -0.117 4.117 14 C -0.122 4.122 15 C 0.021 3.979 16 H 0.035 0.965 17 C -0.513 4.513 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.904 5.904 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.077 3.923 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -18.269 -14.071 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.355 5.355 4 C -0.022 4.022 5 C -0.237 4.237 6 C 0.313 3.687 7 O -0.392 6.392 8 C -0.047 4.047 9 H 0.119 0.881 10 C -0.253 4.253 11 N -0.244 5.244 12 C -0.075 4.075 13 C -0.155 4.155 14 C -0.160 4.160 15 C 0.002 3.998 16 H 0.054 0.946 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.542 5.542 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.050 4.050 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.301 -18.531 -13.217 22.799 hybrid contribution 0.599 -0.045 0.518 0.793 sum 1.900 -18.576 -12.699 22.582 Atomic orbital electron populations 1.22130 0.95972 1.02119 1.02358 1.21328 0.94304 0.82580 1.02675 1.48063 1.66753 1.14128 1.06551 1.21641 0.96244 0.98582 0.85734 1.22401 0.97099 1.01991 1.02188 1.20712 0.76005 0.88972 0.82993 1.90613 1.48930 1.69294 1.30329 1.21598 0.96796 0.92244 0.94051 0.88080 1.22731 0.96573 1.03707 1.02335 1.61964 1.51969 1.06869 1.03613 1.22279 0.92256 1.00463 0.92473 1.21614 1.01279 0.97343 0.95222 1.22026 1.00988 0.92955 0.99989 1.19150 0.95391 0.95339 0.89957 0.94642 1.20994 1.46623 0.89108 0.98376 0.90993 1.24963 0.94646 0.94631 0.98783 1.69899 1.49860 1.05703 1.28737 0.86840 0.78455 0.79505 0.83456 1.20725 1.22687 1.18733 1.22147 0.99005 0.83516 1.00331 0.91933 0.92764 0.91843 0.90877 0.90230 0.90653 0.89618 0.91386 0.92475 0.91343 0.92075 0.90779 0.90766 0.89209 0.95874 0.91869 0.93036 0.92701 0.93693 0.92743 0.91619 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.21 37.16 0.38 -1.16 16 2 C 0.11 1.07 6.15 -4.04 -0.02 1.05 16 3 N -0.62 -6.63 2.48 -173.68 -0.43 -7.06 16 4 C 0.10 0.77 5.57 -4.04 -0.02 0.75 16 5 C -0.18 -1.17 9.16 37.16 0.34 -0.83 16 6 C 0.53 7.59 6.79 -10.99 -0.07 7.52 16 7 O -0.52 -9.34 13.51 5.56 0.08 -9.26 16 8 C 0.07 0.94 1.89 -68.86 -0.13 0.81 16 9 H 0.10 1.33 6.93 -51.93 -0.36 0.97 16 10 C -0.19 -2.36 7.27 37.16 0.27 -2.09 16 11 N -0.52 -9.58 4.43 -228.07 -1.01 -10.59 16 12 C 0.05 0.96 4.39 -3.83 -0.02 0.95 16 13 C -0.12 -2.30 6.09 -26.65 -0.16 -2.47 16 14 C -0.12 -2.77 4.74 -26.61 -0.13 -2.90 16 15 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 16 H 0.04 0.92 7.19 -51.93 -0.37 0.54 16 17 C -0.51 -14.48 9.14 -34.44 -0.31 -14.79 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.89 22.74 24.36 -169.99 -4.14 18.60 16 22 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 23 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 25 C 0.08 1.56 4.37 -3.83 -0.02 1.54 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.04 -51.93 -0.42 0.09 16 30 H 0.08 0.88 7.49 -51.93 -0.39 0.49 16 31 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.09 0.65 5.27 -51.92 -0.27 0.38 16 33 H 0.07 0.54 6.07 -51.93 -0.32 0.22 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.78 7.01 -51.93 -0.36 0.42 16 37 H 0.07 0.68 3.85 -51.93 -0.20 0.48 16 38 H 0.07 0.98 6.47 -51.93 -0.34 0.64 16 39 H 0.09 1.67 5.41 -51.93 -0.28 1.39 16 40 H 0.02 0.41 6.78 -51.93 -0.35 0.05 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 1.08 3.37 -51.93 -0.17 0.90 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 46 H 0.07 1.31 8.02 -51.93 -0.42 0.89 16 47 H 0.03 0.60 6.69 -51.93 -0.35 0.25 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -32.72 340.47 -7.77 -40.49 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.00 Total: -0.85 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.17 Total: -9.30 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.67 Total: -44.80 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.72 -7.77 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397685547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.206 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds