Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00072 * 2 1 4 4 C 1.52992 * 109.47181 * 293.95794 * 3 2 1 5 5 H 1.09003 * 109.47096 * 60.00417 * 4 3 2 6 6 O 1.42900 * 109.47542 * 299.99803 * 4 3 2 7 7 C 1.53005 * 109.47155 * 180.02562 * 4 3 2 8 8 N 1.46895 * 109.47455 * 185.00419 * 7 4 3 9 9 C 1.46853 * 110.99660 * 293.95028 * 8 7 4 10 10 C 1.53036 * 109.52427 * 185.83753 * 9 8 7 11 11 C 1.53117 * 109.27818 * 300.82356 * 10 9 8 12 12 C 1.53124 * 109.16094 * 57.65433 * 11 10 9 13 13 H 1.09001 * 109.50366 * 62.32552 * 12 11 10 14 14 C 1.50700 * 109.50099 * 182.40293 * 12 11 10 15 15 H 1.07999 * 119.99988 * 119.99737 * 14 12 11 16 16 C 1.37885 * 120.00047 * 299.99917 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 359.72512 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.46844 * 111.00225 * 58.15800 * 8 7 4 23 23 C 1.46899 * 111.00013 * 123.96083 * 2 1 3 24 24 C 1.52997 * 117.50046 * 124.66488 * 23 2 1 25 25 C 1.52993 * 59.99943 * 252.50911 * 24 23 2 26 26 H 1.08996 * 109.47541 * 59.99178 * 1 2 3 27 27 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46678 * 299.99431 * 1 2 3 29 29 H 1.08994 * 109.46994 * 173.95422 * 3 2 1 30 30 H 1.09003 * 109.46606 * 53.95659 * 3 2 1 31 31 H 0.96704 * 113.99549 * 300.00630 * 6 4 3 32 32 H 1.08999 * 109.47186 * 64.99392 * 7 4 3 33 33 H 1.09008 * 109.46761 * 305.00106 * 7 4 3 34 34 H 1.09005 * 109.45879 * 65.82159 * 9 8 7 35 35 H 1.08999 * 109.45163 * 305.85348 * 9 8 7 36 36 H 1.08993 * 109.50219 * 180.87630 * 10 9 8 37 37 H 1.09003 * 109.49810 * 60.76807 * 10 9 8 38 38 H 1.08999 * 109.52365 * 297.74604 * 11 10 9 39 39 H 1.09005 * 109.56853 * 177.58685 * 11 10 9 40 40 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.46093 * 54.15330 * 22 8 7 42 42 H 1.08996 * 109.46666 * 294.18230 * 22 8 7 43 43 H 1.09000 * 115.54966 * 270.37291 * 23 2 1 44 44 H 1.08998 * 117.49823 * 359.97438 * 24 23 2 45 45 H 1.08997 * 117.50116 * 145.01479 * 24 23 2 46 46 H 1.09003 * 117.49773 * 252.50965 * 25 24 23 47 47 H 1.09000 * 117.50214 * 107.49592 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3181 5 1 0.5472 2.0845 -1.4263 6 8 2.2008 1.3288 -2.4076 7 6 2.1804 3.4856 -1.3184 8 7 1.7298 4.1832 -2.5301 9 6 2.3195 3.5822 -3.7333 10 6 1.9465 4.4197 -4.9587 11 6 0.4218 4.4753 -5.0879 12 6 -0.1705 5.0602 -3.8028 13 1 0.1880 6.0808 -3.6685 14 6 -1.6745 5.0638 -3.8983 15 1 -2.2626 4.5134 -3.1788 16 6 -2.2998 5.7698 -4.9042 17 7 -3.6123 5.7733 -4.9871 18 14 -1.2829 6.7280 -6.1440 19 1 -0.9579 5.8533 -7.2992 20 1 -2.0573 7.9039 -6.6160 21 1 -0.0253 7.1884 -5.5025 22 6 0.2638 4.2041 -2.6110 23 6 1.9955 -0.7661 1.1375 24 6 2.9693 -1.9058 0.8315 25 6 1.5410 -2.2199 1.2810 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.0797 1.3443 0.1082 30 1 1.5612 1.9272 0.8310 31 1 3.1652 1.2642 -2.3763 32 1 3.2698 3.4562 -1.2998 33 1 1.8162 4.0150 -0.4378 34 1 1.9387 2.5683 -3.8567 35 1 3.4042 3.5526 -3.6299 36 1 2.3713 3.9647 -5.8533 37 1 2.3391 5.4299 -4.8421 38 1 0.0325 3.4691 -5.2435 39 1 0.1500 5.1060 -5.9344 40 1 -4.0522 6.2697 -5.6950 41 1 -0.1446 4.6262 -1.6927 42 1 -0.1075 3.1874 -2.7397 43 1 2.1580 -0.1969 2.0527 44 1 3.2190 -2.0875 -0.2138 45 1 3.7729 -2.0865 1.5454 46 1 1.4049 -2.6073 2.2908 47 1 0.8513 -2.6081 0.5315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397689067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -9.276394 kcal Electronic energy + Delta-G solvation = -23596.359179 eV Core-core repulsion = 20394.122809 eV Total energy + Delta-G solvation = -3202.236370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55908 -38.38850 -36.60178 -34.14632 -33.53738 -32.07616 -30.22479 -29.39702 -26.75361 -25.13015 -24.67995 -22.55204 -22.39629 -21.23365 -21.06207 -20.48777 -18.70437 -17.05709 -16.62589 -16.24231 -15.76153 -15.43300 -15.11707 -14.55119 -14.26192 -14.23781 -13.87937 -13.61030 -13.37416 -12.97010 -12.76103 -12.37982 -12.30464 -12.02785 -11.95839 -11.66008 -11.53030 -11.25379 -11.12592 -10.98598 -10.90173 -10.73209 -10.46246 -10.37099 -10.18042 -9.91203 -9.83526 -9.52905 -9.04020 -8.86434 -8.46117 -8.43616 -7.52646 -6.02448 -4.01026 3.33325 3.43623 3.47862 3.50509 3.57151 4.40914 4.47430 4.54010 4.67310 4.70498 4.79462 4.92891 5.04321 5.13503 5.27782 5.29881 5.36061 5.40775 5.46752 5.52385 5.54819 5.62991 5.71999 5.73729 5.85250 5.91218 5.94002 5.96643 6.13253 6.21882 6.27555 6.43140 6.45874 6.65807 6.72038 6.83504 6.89926 6.94453 6.95070 7.27578 7.48698 7.66586 7.71489 7.78616 7.93328 8.57095 9.00547 9.60909 11.10865 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.003938 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.833154 B = 7108.445843 C = 7686.109953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.504 5.504 3 C 0.029 3.971 4 C 0.072 3.928 5 H 0.105 0.895 6 O -0.539 6.539 7 C 0.027 3.973 8 N -0.534 5.534 9 C 0.049 3.951 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.021 3.979 13 H 0.033 0.967 14 C -0.513 4.513 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.904 5.904 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.264 1.264 22 C 0.074 3.926 23 C 0.002 3.998 24 C -0.163 4.163 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.365 0.635 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.633 -11.936 11.255 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.227 5.227 3 C -0.100 4.100 4 C 0.011 3.989 5 H 0.123 0.877 6 O -0.343 6.343 7 C -0.103 4.103 8 N -0.257 5.257 9 C -0.079 4.079 10 C -0.159 4.159 11 C -0.158 4.158 12 C 0.002 3.998 13 H 0.051 0.949 14 C -0.551 4.551 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.053 4.053 23 C -0.107 4.107 24 C -0.201 4.201 25 C -0.213 4.213 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.212 0.788 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.154 -11.636 10.574 21.156 hybrid contribution 0.369 0.189 0.216 0.468 sum 14.524 -11.447 10.790 21.410 Atomic orbital electron populations 1.22437 0.86841 1.02212 1.01018 1.61724 1.07965 1.13230 1.39800 1.22841 1.00381 0.88487 0.98246 1.22845 1.00066 0.90813 0.85225 0.87723 1.86662 1.24726 1.76816 1.46071 1.22822 1.00119 0.92102 0.95257 1.62271 1.10389 1.51773 1.01277 1.22298 0.97596 0.98203 0.89772 1.21670 0.98046 0.99859 0.96307 1.21990 0.92855 1.00977 0.99986 1.19141 0.95836 0.95068 0.89791 0.94907 1.21012 0.89159 1.31145 1.13774 0.91068 1.24983 0.94707 0.95939 0.97500 1.69905 1.08119 1.42681 1.33511 0.86816 0.80349 0.79132 0.81782 1.20721 1.22732 1.18846 1.22103 0.84187 0.98896 1.00122 1.22444 1.04664 0.89790 0.93769 1.23053 0.92562 1.01802 1.02708 1.23045 0.98615 0.97161 1.02495 0.90615 0.91356 0.95659 0.90596 0.94020 0.78822 0.91130 0.90379 0.91324 0.92833 0.93035 0.92446 0.92540 0.93812 0.92755 0.91985 0.95059 0.89630 0.88103 0.89031 0.88860 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.18 60.07 0.55 0.81 16 2 N -0.50 -5.61 4.78 -234.90 -1.12 -6.73 16 3 C 0.03 0.31 4.58 -3.83 -0.02 0.29 16 4 C 0.07 0.90 2.52 -26.73 -0.07 0.83 16 5 H 0.11 1.59 4.65 -51.93 -0.24 1.35 16 6 O -0.54 -7.11 9.88 -35.23 -0.35 -7.45 16 7 C 0.03 0.35 5.18 -3.82 -0.02 0.33 16 8 N -0.53 -9.09 4.86 -234.67 -1.14 -10.23 16 9 C 0.05 0.80 4.61 -3.83 -0.02 0.78 16 10 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 11 C -0.12 -2.70 4.74 -26.61 -0.13 -2.82 16 12 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 13 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 14 C -0.51 -14.55 9.14 -34.44 -0.31 -14.87 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 18 Si 0.89 22.60 24.36 -169.99 -4.14 18.46 16 19 H -0.28 -6.96 6.88 56.52 0.39 -6.57 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 22 C 0.07 1.50 4.06 -3.84 -0.02 1.48 16 23 C 0.00 0.02 5.27 -67.72 -0.36 -0.34 16 24 C -0.16 -1.37 10.46 -26.74 -0.28 -1.65 16 25 C -0.18 -1.47 9.72 -26.74 -0.26 -1.73 16 26 H 0.08 0.99 6.47 -51.93 -0.34 0.65 16 27 H 0.07 0.72 6.76 -51.93 -0.35 0.37 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.37 3.62 9.04 45.56 0.41 4.03 16 32 H 0.07 0.78 8.06 -51.93 -0.42 0.37 16 33 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.07 1.17 5.54 -51.93 -0.29 0.88 16 35 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.04 1.04 3.36 -51.93 -0.17 0.86 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.03 0.66 6.49 -51.93 -0.34 0.32 16 43 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.89 7.25 -51.93 -0.38 0.51 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -31.23 347.94 -9.66 -40.88 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.57 Total: 4.08 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.35 Total: -16.99 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -1.49 Total: -44.23 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.35 Total: -7.45 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.23 -9.66 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397689067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.604 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds