Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99903 * 2 1 4 4 C 1.52997 * 109.47291 * 161.49038 * 3 2 1 5 5 H 1.08998 * 109.47037 * 54.82129 * 4 3 2 6 6 O 1.42905 * 109.46922 * 294.82710 * 4 3 2 7 7 C 1.52997 * 109.47391 * 174.82887 * 4 3 2 8 8 N 1.46903 * 109.47141 * 185.00205 * 7 4 3 9 9 C 1.46846 * 111.00234 * 66.04453 * 8 7 4 10 10 C 1.53033 * 109.52283 * 174.16352 * 9 8 7 11 11 C 1.53120 * 109.28184 * 59.17944 * 10 9 8 12 12 C 1.53116 * 109.15594 * 302.34266 * 11 10 9 13 13 H 1.08996 * 109.50850 * 297.71360 * 12 11 10 14 14 C 1.50699 * 109.50262 * 177.59567 * 12 11 10 15 15 H 1.08002 * 120.00097 * 270.78108 * 14 12 11 16 16 C 1.37881 * 120.00014 * 90.77862 * 14 12 11 17 17 N 1.31520 * 120.00016 * 186.45004 * 16 14 12 18 18 Si 1.86802 * 119.99840 * 6.44930 * 16 14 12 19 19 H 1.48496 * 109.46901 * 91.00265 * 18 16 14 20 20 H 1.48504 * 109.46606 * 210.99848 * 18 16 14 21 21 H 1.48497 * 109.47005 * 330.99849 * 18 16 14 22 22 C 1.46844 * 110.99926 * 301.83339 * 8 7 4 23 23 C 1.46901 * 111.00275 * 236.04656 * 2 1 3 24 24 C 1.53001 * 117.49646 * 235.20857 * 23 2 1 25 25 C 1.52999 * 117.49530 * 303.86674 * 23 2 1 26 26 H 1.09003 * 109.47134 * 189.65864 * 1 2 3 27 27 H 1.08997 * 109.47190 * 309.66124 * 1 2 3 28 28 H 1.09002 * 109.47111 * 69.65977 * 1 2 3 29 29 H 1.08995 * 109.47289 * 281.49091 * 3 2 1 30 30 H 1.09009 * 109.47277 * 41.49397 * 3 2 1 31 31 H 0.96694 * 114.00237 * 299.99047 * 6 4 3 32 32 H 1.08998 * 109.46729 * 304.99532 * 7 4 3 33 33 H 1.08996 * 109.47490 * 65.00031 * 7 4 3 34 34 H 1.09000 * 109.45782 * 294.17352 * 9 8 7 35 35 H 1.08994 * 109.46286 * 54.15473 * 9 8 7 36 36 H 1.09005 * 109.50125 * 179.12137 * 10 9 8 37 37 H 1.08996 * 109.50431 * 299.23363 * 10 9 8 38 38 H 1.08994 * 109.52341 * 62.24633 * 11 10 9 39 39 H 1.09004 * 109.52123 * 182.37717 * 11 10 9 40 40 H 0.96995 * 119.99621 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.46581 * 305.85345 * 22 8 7 42 42 H 1.08995 * 109.46460 * 65.82367 * 22 8 7 43 43 H 1.08999 * 115.54951 * 89.53722 * 23 2 1 44 44 H 1.09003 * 117.49370 * 214.99582 * 24 23 2 45 45 H 1.08987 * 117.50006 * 0.02562 * 24 23 2 46 46 H 1.09002 * 117.50280 * 359.97438 * 25 23 2 47 47 H 1.09001 * 117.49700 * 144.97427 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4552 1.3574 0.4579 5 1 4.0255 0.6703 -0.1672 6 8 3.5231 0.9301 1.8199 7 6 4.0418 2.7651 0.3353 8 7 5.4740 2.7289 0.6603 9 6 6.2204 1.9513 -0.3370 10 6 7.7198 2.0559 -0.0493 11 6 8.0032 1.5224 1.3577 12 6 7.1769 2.3175 2.3724 13 1 7.4790 3.3645 2.3473 14 6 7.4048 1.7603 3.7538 15 1 6.7791 0.9616 4.1240 16 6 8.4123 2.2700 4.5453 17 7 8.6944 1.7021 5.6975 18 14 9.3765 3.7670 3.9809 19 1 8.7212 4.9985 4.4899 20 1 10.7629 3.6901 4.5074 21 1 9.4118 3.8024 2.4967 22 6 5.6932 2.2052 2.0145 23 6 1.9956 -0.7660 -1.1376 24 6 2.9717 -1.9038 -0.8319 25 6 1.5427 -2.2204 -1.2800 26 1 -0.3633 -1.0131 0.1724 27 1 -0.3633 0.6559 0.7911 28 1 -0.3633 0.3572 -0.9636 29 1 1.9345 1.7840 -1.0070 30 1 1.4070 1.9865 0.6809 31 1 3.0368 1.4965 2.4345 32 1 3.9098 3.1261 -0.6847 33 1 3.5292 3.4339 1.0266 34 1 5.9131 0.9067 -0.2871 35 1 6.0135 2.3436 -1.3326 36 1 8.2727 1.4660 -0.7804 37 1 8.0306 3.0987 -0.1126 38 1 7.7286 0.4689 1.4099 39 1 9.0638 1.6341 1.5828 40 1 9.4029 2.0609 6.2544 41 1 5.1032 2.7820 2.7269 42 1 5.3884 1.1595 2.0533 43 1 2.1566 -0.1970 -2.0532 44 1 3.7749 -2.0834 -1.5465 45 1 3.2228 -2.0842 0.2132 46 1 0.8544 -2.6091 -0.5295 47 1 1.4054 -2.6082 -2.2894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397689068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -14.549560 kcal Electronic energy + Delta-G solvation = -23796.768425 eV Core-core repulsion = 20594.303393 eV Total energy + Delta-G solvation = -3202.465031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49441 -38.31562 -36.36217 -34.11055 -33.45136 -31.96569 -30.15089 -29.68251 -26.47341 -24.88274 -24.49931 -22.60240 -22.37400 -21.63435 -20.70750 -20.43014 -18.59247 -17.01662 -16.62712 -16.10547 -15.66273 -15.16652 -14.99244 -14.89797 -14.19537 -13.91502 -13.86924 -13.38478 -13.19561 -12.91485 -12.67897 -12.44976 -12.29532 -12.08806 -11.87993 -11.68677 -11.47662 -11.25813 -11.07110 -10.94487 -10.79001 -10.54474 -10.48450 -10.35148 -10.26926 -9.85293 -9.70070 -9.36373 -9.10731 -8.80717 -8.43337 -8.37306 -7.41697 -5.96592 -3.93781 3.37937 3.46049 3.51821 3.54367 3.64931 4.46164 4.53969 4.64303 4.67781 4.77401 4.82082 4.98908 5.12747 5.15601 5.30345 5.34558 5.36219 5.40004 5.47004 5.48517 5.57307 5.58915 5.67417 5.69170 5.86926 5.89062 5.94273 6.11043 6.13782 6.23494 6.37146 6.47191 6.55809 6.70430 6.83259 6.93062 6.97542 7.00972 7.06781 7.45024 7.63196 7.72693 7.76982 7.98762 8.02322 8.67874 9.11301 9.68456 11.16930 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004210 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.715931 B = 6648.655605 C = 6799.779638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.505 5.505 3 C 0.029 3.971 4 C 0.079 3.921 5 H 0.097 0.903 6 O -0.534 6.534 7 C 0.024 3.976 8 N -0.536 5.536 9 C 0.061 3.939 10 C -0.120 4.120 11 C -0.111 4.111 12 C 0.017 3.983 13 H 0.033 0.967 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.261 1.261 22 C 0.062 3.938 23 C 0.003 3.997 24 C -0.159 4.159 25 C -0.177 4.177 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.367 0.633 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 -1.781 -15.810 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.228 5.228 3 C -0.100 4.100 4 C 0.018 3.982 5 H 0.115 0.885 6 O -0.338 6.338 7 C -0.105 4.105 8 N -0.259 5.259 9 C -0.067 4.067 10 C -0.158 4.158 11 C -0.149 4.149 12 C -0.002 4.002 13 H 0.051 0.949 14 C -0.543 4.543 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.543 5.543 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.185 1.185 22 C -0.064 4.064 23 C -0.106 4.106 24 C -0.197 4.197 25 C -0.214 4.214 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.215 0.785 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.247 -1.978 -15.478 21.129 hybrid contribution -0.390 0.875 -0.766 1.226 sum -14.637 -1.103 -16.244 21.893 Atomic orbital electron populations 1.22358 0.87357 1.02387 0.99902 1.61707 1.07086 1.13385 1.40646 1.22915 0.97849 0.88941 1.00311 1.22649 0.93480 0.97153 0.84944 0.88516 1.86749 1.75019 1.56210 1.15853 1.22846 0.90640 0.95509 1.01544 1.62320 1.05509 1.53679 1.04427 1.21993 0.94938 0.95404 0.94407 1.21669 0.94304 1.01074 0.98709 1.21863 1.00330 0.99833 0.92910 1.19215 0.90775 0.95834 0.94415 0.94905 1.21004 1.16306 1.19838 0.97186 0.91005 1.25037 0.96522 0.96764 0.94761 1.69934 1.31486 1.40550 1.12308 0.86879 0.79127 0.83947 0.79790 1.20519 1.21883 1.18494 1.22518 0.98659 0.99663 0.85539 1.22454 1.05087 0.89749 0.93306 1.23103 0.92233 1.01062 1.03270 1.23049 0.99095 0.96952 1.02320 0.91395 0.91476 0.95878 0.94161 0.90547 0.78544 0.91139 0.90781 0.95221 0.92604 0.93162 0.92230 0.93204 0.93336 0.92900 0.92402 0.91485 0.89669 0.88932 0.87625 0.88479 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.32 60.07 0.56 0.81 16 2 N -0.50 -5.55 4.80 -234.89 -1.13 -6.68 16 3 C 0.03 0.30 4.63 -3.83 -0.02 0.28 16 4 C 0.08 1.02 2.77 -26.73 -0.07 0.94 16 5 H 0.10 1.40 5.74 -51.93 -0.30 1.10 16 6 O -0.53 -8.15 9.73 -35.23 -0.34 -8.49 16 7 C 0.02 0.33 5.18 -3.82 -0.02 0.31 16 8 N -0.54 -9.27 4.86 -234.68 -1.14 -10.41 16 9 C 0.06 0.99 5.06 -3.84 -0.02 0.97 16 10 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 11 C -0.11 -2.44 5.23 -26.61 -0.14 -2.58 16 12 C 0.02 0.41 1.82 -91.69 -0.17 0.24 16 13 H 0.03 0.83 5.36 -51.93 -0.28 0.55 16 14 C -0.50 -14.37 8.86 -34.44 -0.31 -14.68 16 15 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 18 Si 0.87 22.16 26.84 -169.99 -4.56 17.60 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.26 -6.36 6.48 56.52 0.37 -5.99 16 22 C 0.06 1.28 3.49 -3.83 -0.01 1.27 16 23 C 0.00 0.03 4.54 -67.71 -0.31 -0.28 16 24 C -0.16 -1.73 10.32 -26.69 -0.28 -2.01 16 25 C -0.18 -1.62 9.82 -26.69 -0.26 -1.88 16 26 H 0.07 0.58 7.13 -51.93 -0.37 0.21 16 27 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 28 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 29 H 0.04 0.39 7.86 -51.93 -0.41 -0.02 16 30 H 0.08 0.72 7.76 -51.92 -0.40 0.32 16 31 H 0.37 4.66 9.04 45.56 0.41 5.07 16 32 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.50 6.65 -51.93 -0.35 0.15 16 35 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.11 7.72 -51.93 -0.40 0.71 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 42 H 0.07 1.45 5.58 -51.93 -0.29 1.16 16 43 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.11 1.38 8.14 -51.94 -0.42 0.95 16 46 H 0.10 0.90 7.34 -51.93 -0.38 0.52 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.56 355.15 -10.16 -41.72 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.81 Total: 5.24 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.30 Total: -16.97 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.49 Total: -44.45 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.34 Total: -8.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.56 Total: 17.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.56 -10.16 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397689068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.170 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds