Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99806 * 2 1 4 4 C 1.53003 * 109.47168 * 199.49549 * 3 2 1 5 5 H 1.09001 * 109.47562 * 302.07639 * 4 3 2 6 6 O 1.42909 * 109.46884 * 62.07141 * 4 3 2 7 7 C 1.52997 * 109.47465 * 182.06727 * 4 3 2 8 8 N 1.46902 * 109.47447 * 180.02562 * 7 4 3 9 9 C 1.46845 * 110.99956 * 294.21722 * 8 7 4 10 10 C 1.53031 * 109.52549 * 174.16075 * 9 8 7 11 11 C 1.53125 * 109.27916 * 59.17396 * 10 9 8 12 12 C 1.53122 * 109.16046 * 302.34990 * 11 10 9 13 13 H 1.09005 * 109.50352 * 297.71248 * 12 11 10 14 14 C 1.50695 * 109.50335 * 177.59423 * 12 11 10 15 15 H 1.08004 * 120.00196 * 240.19761 * 14 12 11 16 16 C 1.37876 * 120.00215 * 60.19587 * 14 12 11 17 17 N 1.31516 * 119.99784 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00363 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 90.00052 * 18 16 14 20 20 H 1.48505 * 109.47468 * 209.99986 * 18 16 14 21 21 H 1.48503 * 109.47266 * 329.99974 * 18 16 14 22 22 C 1.46840 * 110.99776 * 170.00473 * 8 7 4 23 23 C 1.46891 * 111.00254 * 123.95898 * 2 1 3 24 24 C 1.53005 * 117.50382 * 124.79284 * 23 2 1 25 25 C 1.52998 * 117.50057 * 56.13081 * 23 2 1 26 26 H 1.08999 * 109.47306 * 54.35177 * 1 2 3 27 27 H 1.09002 * 109.47071 * 174.35223 * 1 2 3 28 28 H 1.08998 * 109.46798 * 294.35312 * 1 2 3 29 29 H 1.08994 * 109.47660 * 319.49567 * 3 2 1 30 30 H 1.08998 * 109.46853 * 79.50412 * 3 2 1 31 31 H 0.96695 * 114.00042 * 60.00016 * 6 4 3 32 32 H 1.08998 * 109.46987 * 300.00938 * 7 4 3 33 33 H 1.09002 * 109.46410 * 60.00580 * 7 4 3 34 34 H 1.09008 * 109.46140 * 294.17205 * 9 8 7 35 35 H 1.08997 * 109.46539 * 54.13895 * 9 8 7 36 36 H 1.09006 * 109.50007 * 299.23919 * 10 9 8 37 37 H 1.08997 * 109.50810 * 179.11277 * 10 9 8 38 38 H 1.09003 * 109.52435 * 182.44410 * 11 10 9 39 39 H 1.09001 * 109.57397 * 62.28593 * 11 10 9 40 40 H 0.96996 * 120.00264 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46404 * 305.85369 * 22 8 7 42 42 H 1.08998 * 109.46600 * 65.83788 * 22 8 7 43 43 H 1.09004 * 115.55132 * 270.46218 * 23 2 1 44 44 H 1.09001 * 117.49375 * 359.97438 * 24 23 2 45 45 H 1.08993 * 117.50206 * 145.01964 * 24 23 2 46 46 H 1.09008 * 117.49855 * 214.98125 * 25 23 2 47 47 H 1.08995 * 117.49953 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4477 1.3603 -0.4814 5 1 4.0396 0.7118 0.1644 6 8 3.5008 0.8727 -1.8237 7 6 4.0121 2.7815 -0.4325 8 7 5.4063 2.7709 -0.8953 9 6 6.2622 2.0173 0.0298 10 6 7.6717 1.9035 -0.5550 11 6 8.2413 3.3073 -0.7782 12 6 7.3062 4.0874 -1.7064 13 1 7.2580 3.5908 -2.6756 14 6 7.8285 5.4897 -1.8841 15 1 7.2235 6.3332 -1.5859 16 6 9.0789 5.6960 -2.4273 17 7 9.8154 4.6689 -2.7908 18 14 9.7261 7.4342 -2.6483 19 1 10.4618 7.8475 -1.4263 20 1 10.6428 7.4765 -3.8159 21 1 8.5885 8.3606 -2.8783 22 6 5.9071 4.1378 -1.0880 23 6 1.9954 -0.7660 1.1374 24 6 2.9716 -1.9039 0.8318 25 6 1.5426 -2.2205 1.2799 26 1 -0.3634 0.5989 -0.8351 27 1 -0.3633 -1.0227 -0.1011 28 1 -0.3633 0.4238 0.9362 29 1 1.3962 1.9907 -0.6674 30 1 1.9508 1.7777 1.0105 31 1 2.9950 1.4025 -2.4549 32 1 3.4201 3.4300 -1.0783 33 1 3.9716 3.1534 0.5913 34 1 6.3071 2.5361 0.9874 35 1 5.8482 1.0197 0.1766 36 1 7.6293 1.3726 -1.5061 37 1 8.3108 1.3577 0.1390 38 1 9.2281 3.2317 -1.2350 39 1 8.3211 3.8252 0.1776 40 1 10.6949 4.8139 -3.1733 41 1 5.2354 4.6803 -1.7533 42 1 5.9539 4.6466 -0.1253 43 1 2.1565 -0.1971 2.0532 44 1 3.2228 -2.0843 -0.2134 45 1 3.7746 -2.0837 1.5465 46 1 1.4061 -2.6086 2.2893 47 1 0.8537 -2.6088 0.5298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397689069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -20.292476 kcal Electronic energy + Delta-G solvation = -23219.805619 eV Core-core repulsion = 20017.091556 eV Total energy + Delta-G solvation = -3202.714063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.20070 -38.16260 -36.48361 -34.09070 -33.53973 -31.73853 -30.01489 -29.44297 -26.45841 -24.92725 -24.42177 -22.41509 -22.38190 -21.70253 -20.56431 -20.39333 -18.53914 -16.95501 -16.29122 -16.03806 -15.57821 -15.05815 -14.89213 -14.83636 -14.50119 -13.91963 -13.60582 -13.33252 -13.19630 -12.95299 -12.58354 -12.35576 -12.21588 -12.02978 -11.86614 -11.62262 -11.48411 -11.22880 -10.93441 -10.82767 -10.66279 -10.59554 -10.46233 -10.37134 -10.00157 -9.84161 -9.71780 -9.38780 -8.93798 -8.65513 -8.43357 -8.25909 -7.55999 -5.93520 -3.99811 3.32611 3.39435 3.42166 3.50591 3.62776 4.34228 4.50644 4.68221 4.75577 4.81074 4.90250 4.98700 5.11607 5.16624 5.35136 5.36320 5.39014 5.44221 5.45084 5.52098 5.56128 5.65379 5.75384 5.86150 5.86538 5.92323 6.09815 6.13703 6.20637 6.35557 6.45548 6.56135 6.78537 6.81525 6.81706 6.91758 7.02626 7.28936 7.45370 7.73171 7.79224 7.86391 8.08005 8.14187 8.22896 8.52608 9.04419 9.64162 11.12418 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036414 B = 0.003323 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.752652 B = 8423.397941 C = 8850.282096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.503 5.503 3 C 0.025 3.975 4 C 0.122 3.878 5 H 0.095 0.905 6 O -0.532 6.532 7 C 0.022 3.978 8 N -0.524 5.524 9 C 0.063 3.937 10 C -0.116 4.116 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C 0.002 3.998 24 C -0.158 4.158 25 C -0.178 4.178 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.366 0.634 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 -10.229 7.992 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.227 5.227 3 C -0.103 4.103 4 C 0.062 3.938 5 H 0.113 0.887 6 O -0.335 6.335 7 C -0.107 4.107 8 N -0.249 5.249 9 C -0.064 4.064 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.059 4.059 23 C -0.106 4.106 24 C -0.196 4.196 25 C -0.215 4.215 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.211 0.789 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.042 -11.180 7.296 20.871 hybrid contribution -0.309 2.336 1.354 2.718 sum -16.351 -8.844 8.650 20.504 Atomic orbital electron populations 1.22364 0.87317 1.02260 1.00108 1.61667 1.07074 1.13304 1.40638 1.22916 0.97984 0.88955 1.00476 1.21805 0.92508 0.94188 0.85319 0.88693 1.86626 1.74948 1.55228 1.16691 1.22767 0.92388 0.97043 0.98530 1.61892 0.99668 1.16620 1.46685 1.22050 0.94720 0.96825 0.92851 1.21656 0.93620 1.00082 1.00051 1.21651 1.02909 0.91690 0.98584 1.18651 0.87562 0.95275 0.94818 0.94664 1.21153 1.01193 0.92054 1.40973 0.92953 1.24935 0.96918 0.96618 0.95382 1.69897 1.10969 1.29320 1.42432 0.86639 0.78803 0.85187 0.77595 1.20842 1.21242 1.20011 1.22321 0.99510 0.85833 0.98212 1.22470 1.05039 0.89742 0.93384 1.23101 0.92229 1.01072 1.03214 1.23058 0.99095 0.97028 1.02341 0.91409 0.91352 0.95889 0.90512 0.94043 0.78861 0.91034 0.95292 0.96403 0.92244 0.91916 0.93706 0.89181 0.95342 0.93076 0.92461 0.96618 0.89611 0.87621 0.88904 0.88961 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.33 60.06 0.56 0.79 16 2 N -0.50 -5.30 4.74 -234.89 -1.11 -6.41 16 3 C 0.03 0.27 4.65 -3.82 -0.02 0.25 16 4 C 0.12 1.60 2.92 -26.73 -0.08 1.52 16 5 H 0.10 1.36 5.96 -51.93 -0.31 1.05 16 6 O -0.53 -7.82 13.10 -35.23 -0.46 -8.28 16 7 C 0.02 0.33 4.62 -3.82 -0.02 0.31 16 8 N -0.52 -9.82 4.52 -234.68 -1.06 -10.88 16 9 C 0.06 1.16 5.29 -3.84 -0.02 1.14 16 10 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 11 C -0.11 -2.67 5.03 -26.60 -0.13 -2.81 16 12 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 13 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.51 -14.28 8.56 -34.44 -0.29 -14.58 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.64 11.36 55.43 0.63 -25.01 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 1.47 4.68 -3.84 -0.02 1.45 16 23 C 0.00 0.02 4.63 -67.72 -0.31 -0.29 16 24 C -0.16 -1.59 10.46 -26.69 -0.28 -1.87 16 25 C -0.18 -1.52 9.79 -26.69 -0.26 -1.78 16 26 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 27 H 0.07 0.54 6.97 -51.93 -0.36 0.18 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.73 7.81 -51.93 -0.41 0.32 16 30 H 0.04 0.42 7.84 -51.93 -0.41 0.01 16 31 H 0.37 4.36 9.04 45.56 0.41 4.77 16 32 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 33 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 34 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.84 7.89 -51.93 -0.41 0.43 16 44 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.10 0.82 7.29 -51.93 -0.38 0.44 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -29.81 362.93 -10.83 -40.64 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.94 Total: 3.61 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.34 Total: -15.53 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -1.55 Total: -42.31 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.46 Total: -8.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.81 -10.83 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397689069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.349 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds