Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 120.00322 * 2 1 4 4 C 1.34780 * 119.99566 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.47859 * 179.97438 * 8 7 6 10 10 C 1.46848 * 110.99510 * 294.21467 * 9 8 7 11 11 C 1.53048 * 109.52064 * 174.15537 * 10 9 8 12 12 C 1.53118 * 109.27745 * 59.17773 * 11 10 9 13 13 C 1.52997 * 109.57543 * 182.41065 * 12 11 10 14 14 C 1.50703 * 109.46888 * 294.71393 * 13 12 11 15 15 H 1.07994 * 120.00141 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00231 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99864 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47002 * 90.00116 * 18 16 14 20 20 H 1.48496 * 109.46922 * 210.00299 * 18 16 14 21 21 H 1.48498 * 109.47133 * 330.00207 * 18 16 14 22 22 C 1.53120 * 109.16026 * 302.34502 * 12 11 10 23 23 C 1.46844 * 111.00526 * 170.00090 * 9 8 7 24 24 H 1.08997 * 109.47274 * 269.99955 * 1 2 3 25 25 H 1.09000 * 109.47018 * 29.99405 * 1 2 3 26 26 H 1.09000 * 109.47828 * 149.99700 * 1 2 3 27 27 H 1.08995 * 109.47620 * 270.00337 * 3 2 1 28 28 H 1.09006 * 109.47028 * 30.00444 * 3 2 1 29 29 H 1.09002 * 109.47109 * 150.00022 * 3 2 1 30 30 H 1.09002 * 109.47060 * 299.99722 * 6 4 2 31 31 H 1.09001 * 109.47380 * 59.99809 * 6 4 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 7 6 4 33 33 H 1.08998 * 109.47533 * 59.99628 * 7 6 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 35 35 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 36 36 H 1.08996 * 109.46339 * 294.16557 * 10 9 8 37 37 H 1.08994 * 109.46869 * 54.14232 * 10 9 8 38 38 H 1.08998 * 109.49998 * 299.23732 * 11 10 9 39 39 H 1.08994 * 109.50211 * 179.11499 * 11 10 9 40 40 H 1.09002 * 109.52451 * 62.24612 * 12 11 10 41 41 H 1.09003 * 109.47495 * 54.71055 * 13 12 11 42 42 H 1.08998 * 109.47327 * 174.71638 * 13 12 11 43 43 H 0.96998 * 120.00640 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.50479 * 297.71302 * 22 12 11 45 45 H 1.08998 * 109.50625 * 177.59615 * 22 12 11 46 46 H 1.09003 * 109.46077 * 305.85847 * 23 9 8 47 47 H 1.08995 * 109.45945 * 65.83669 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0001 7 6 4.1557 -2.6098 -0.0001 8 6 5.6857 -2.6100 -0.0001 9 7 6.1754 -3.9949 0.0004 10 6 5.8207 -4.6780 1.2510 11 6 6.2163 -6.1535 1.1578 12 6 7.7232 -6.2580 0.9069 13 6 8.1164 -7.7285 0.7528 14 6 7.8857 -8.4494 2.0559 15 1 7.4970 -7.9126 2.9086 16 6 8.1708 -9.7944 2.1596 17 7 7.9690 -10.4237 3.2966 18 14 8.8424 -10.7232 0.6845 19 1 10.3260 -10.6617 0.6944 20 1 8.4052 -12.1408 0.7513 21 1 8.3297 -10.1054 -0.5648 22 6 8.0730 -5.4977 -0.3753 23 6 7.6237 -4.0412 -0.2377 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3635 -0.8899 -0.5139 27 1 2.3792 1.5833 -1.0276 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1382 0.5138 30 1 4.0095 -0.6530 -0.8895 31 1 4.0089 -0.6541 0.8905 32 1 3.7921 -3.1239 0.8897 33 1 3.7927 -3.1235 -0.8902 34 1 6.0490 -2.0960 -0.8901 35 1 6.0491 -2.0962 0.8899 36 1 6.3500 -4.2119 2.0821 37 1 4.7461 -4.5999 1.4154 38 1 5.6770 -6.6236 0.3355 39 1 5.9672 -6.6567 2.0920 40 1 8.2635 -5.8226 1.7475 41 1 7.5099 -8.1869 -0.0283 42 1 9.1699 -7.7964 0.4816 43 1 8.1692 -11.3700 3.3695 44 1 7.5629 -5.9575 -1.2218 45 1 9.1505 -5.5323 -0.5365 46 1 7.8585 -3.5005 -1.1545 47 1 8.1444 -3.5783 0.6005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399325879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -52.182420 kcal Electronic energy + Delta-G solvation = -22293.702973 eV Core-core repulsion = 19089.606058 eV Total energy + Delta-G solvation = -3204.096915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.15226 -38.80188 -35.91790 -35.30002 -33.21290 -31.91070 -30.37570 -29.21534 -28.22845 -26.95734 -25.30860 -23.35419 -22.82613 -21.15379 -20.30083 -19.45258 -18.92714 -17.22713 -16.67343 -16.49946 -16.37474 -15.42508 -15.20313 -14.46613 -14.22283 -14.02689 -13.60816 -13.60163 -13.22217 -13.09558 -13.03746 -12.85699 -12.80744 -12.52783 -12.26462 -12.08874 -11.76059 -11.62154 -11.41392 -11.22488 -10.81039 -10.76039 -10.64931 -10.43087 -10.09050 -10.05205 -9.64400 -9.50828 -9.18624 -9.06656 -8.93465 -8.45844 -8.05555 -5.96836 -3.93399 2.38237 2.65758 3.36140 3.43625 3.48704 4.02551 4.28135 4.52422 4.59960 4.77490 4.85040 4.88034 4.91823 5.15067 5.17626 5.24267 5.26937 5.34767 5.37012 5.41295 5.46627 5.49955 5.57937 5.63557 5.75803 5.89598 5.97179 6.05068 6.08380 6.12713 6.25193 6.32584 6.43704 6.56512 6.64380 6.93176 6.97324 7.03139 7.12949 7.33142 7.37127 7.44880 7.59020 7.88965 7.90156 8.62785 9.08658 9.66618 11.16672 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.002711 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.708853 B =10326.350998 C =10801.127934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.629 5.629 3 C 0.078 3.922 4 C 0.511 3.489 5 O -0.532 6.532 6 C -0.136 4.136 7 C -0.103 4.103 8 C 0.057 3.943 9 N -0.537 5.537 10 C 0.053 3.947 11 C -0.101 4.101 12 C -0.073 4.073 13 C -0.009 4.009 14 C -0.513 4.513 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.115 4.115 23 C 0.061 3.939 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 26.333 -8.353 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.365 5.365 3 C -0.065 4.065 4 C 0.299 3.701 5 O -0.408 6.408 6 C -0.177 4.177 7 C -0.141 4.141 8 C -0.071 4.071 9 N -0.262 5.262 10 C -0.074 4.074 11 C -0.139 4.139 12 C -0.091 4.091 13 C -0.046 4.046 14 C -0.551 4.551 15 H 0.090 0.910 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.153 4.153 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.977 25.342 -8.651 28.576 hybrid contribution 0.773 0.051 0.039 0.775 sum -9.204 25.392 -8.613 28.349 Atomic orbital electron populations 1.21626 0.79315 1.03074 1.01839 1.47824 1.07148 1.06576 1.74908 1.21819 0.97462 0.85271 1.01987 1.20870 0.90621 0.82997 0.75575 1.90734 1.70452 1.30904 1.48683 1.21674 0.91361 1.00583 1.04039 1.21375 0.94442 0.93777 1.04546 1.22056 0.94887 0.89998 1.00197 1.61908 1.14050 1.14109 1.36111 1.22261 1.00140 0.96139 0.88893 1.21551 0.96448 0.92969 1.02906 1.21048 0.95375 0.97423 0.95300 1.19611 0.95601 0.91684 0.97732 1.21166 1.42906 0.94125 0.96860 0.90981 1.25038 0.95305 0.97719 0.95595 1.69915 1.49566 1.10083 1.25033 0.86796 0.79416 0.78994 0.84193 1.20480 1.21540 1.18962 1.21726 0.99874 0.93795 0.99864 1.22068 0.87019 0.98157 0.99465 0.92800 0.91381 0.90462 0.92447 0.91010 0.90684 0.88910 0.89033 0.90894 0.90281 0.91205 0.95321 0.95478 0.91060 0.91899 0.90461 0.92533 0.96548 0.97264 0.92892 0.91617 0.92204 0.91694 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.44 59.85 0.62 1.21 16 2 N -0.63 -4.99 3.27 -189.53 -0.62 -5.61 16 3 C 0.08 0.31 10.24 59.84 0.61 0.93 16 4 C 0.51 5.53 7.67 -10.98 -0.08 5.44 16 5 O -0.53 -8.14 15.56 5.56 0.09 -8.06 16 6 C -0.14 -1.12 4.25 -27.88 -0.12 -1.24 16 7 C -0.10 -1.17 4.43 -26.74 -0.12 -1.29 16 8 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 9 N -0.54 -7.85 4.66 -234.67 -1.09 -8.94 16 10 C 0.05 0.85 5.29 -3.83 -0.02 0.83 16 11 C -0.10 -1.96 5.15 -26.65 -0.14 -2.10 16 12 C -0.07 -1.47 2.20 -90.50 -0.20 -1.67 16 13 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 14 C -0.51 -14.73 9.00 -34.44 -0.31 -15.04 16 15 H 0.07 2.21 7.32 -52.49 -0.38 1.83 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 18 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 22 C -0.11 -1.93 5.38 -26.65 -0.14 -2.08 16 23 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 26 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 29 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 30 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.09 0.59 7.40 -51.93 -0.38 0.21 16 32 H 0.07 0.96 6.39 -51.93 -0.33 0.63 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.07 0.69 7.99 -51.93 -0.41 0.27 16 35 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.65 7.05 -51.93 -0.37 1.29 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 42 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -34.23 362.07 -8.95 -43.19 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.76 Total: -3.94 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.13 Total: -12.05 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.94 Total: -42.22 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.23 -8.95 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399325879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.997 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds