Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47161 * 2 1 4 4 C 1.36940 * 120.00075 * 279.43257 * 3 2 1 5 5 H 1.08002 * 120.00045 * 138.60823 * 4 3 2 6 6 C 1.38812 * 119.99749 * 318.60579 * 4 3 2 7 7 N 1.31620 * 119.99783 * 167.10894 * 6 4 3 8 8 Si 1.86801 * 120.00070 * 347.10260 * 6 4 3 9 9 H 1.48491 * 109.47288 * 91.49856 * 8 6 4 10 10 H 1.48505 * 109.47191 * 211.50249 * 8 6 4 11 11 H 1.48501 * 109.47036 * 331.49579 * 8 6 4 12 12 C 1.46502 * 120.00128 * 99.42709 * 3 2 1 13 13 H 1.08997 * 109.47070 * 186.53678 * 12 3 2 14 14 C 1.53001 * 109.46708 * 66.53719 * 12 3 2 15 15 C 1.50696 * 109.47115 * 306.54264 * 12 3 2 16 16 O 1.21281 * 120.00288 * 39.73783 * 15 12 3 17 17 N 1.34775 * 120.00204 * 219.74541 * 15 12 3 18 18 C 1.46505 * 119.99756 * 354.90569 * 17 15 12 19 19 C 1.46495 * 120.00775 * 175.17925 * 17 15 12 20 20 C 1.52993 * 109.47662 * 240.00300 * 19 17 15 21 21 C 1.52997 * 109.47666 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.46832 * 59.99451 * 21 20 19 23 23 C 1.52993 * 109.47571 * 300.00312 * 22 21 20 24 24 C 1.52993 * 109.47377 * 119.99777 * 19 17 15 25 25 H 1.08999 * 109.46796 * 188.55116 * 1 2 3 26 26 H 1.08997 * 109.46906 * 308.55522 * 1 2 3 27 27 H 1.09007 * 109.47083 * 68.55342 * 1 2 3 28 28 H 1.09003 * 109.46907 * 240.00106 * 2 1 3 29 29 H 1.08994 * 109.47504 * 120.00367 * 2 1 3 30 30 H 0.97003 * 119.99567 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47351 * 63.03348 * 14 12 3 32 32 H 1.09006 * 109.46945 * 183.02994 * 14 12 3 33 33 H 1.08995 * 109.47250 * 303.03008 * 14 12 3 34 34 H 1.08998 * 109.47111 * 84.67688 * 18 17 15 35 35 H 1.08997 * 109.47516 * 204.67449 * 18 17 15 36 36 H 1.09005 * 109.46965 * 324.67635 * 18 17 15 37 37 H 1.09007 * 109.47049 * 0.02562 * 19 17 15 38 38 H 1.09001 * 109.46841 * 299.99571 * 20 19 17 39 39 H 1.09005 * 109.47312 * 59.99576 * 20 19 17 40 40 H 1.09012 * 109.47077 * 300.00401 * 21 20 19 41 41 H 1.08992 * 109.47857 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.46651 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46805 * 60.00924 * 22 21 20 44 44 H 1.09001 * 109.47081 * 300.00110 * 23 22 21 45 45 H 1.08996 * 109.47542 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.47497 * 300.00548 * 24 19 17 47 47 H 1.09001 * 109.47059 * 60.00470 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0634 2.0916 -1.1699 5 1 1.7627 3.1288 -1.1838 6 6 2.4955 1.4785 -2.3379 7 7 2.3038 2.0667 -3.4996 8 14 3.3491 -0.1813 -2.2609 9 1 2.3412 -1.2632 -2.3977 10 1 4.3364 -0.2819 -3.3656 11 1 4.0485 -0.3183 -0.9581 12 6 2.4585 2.0026 1.2516 13 1 2.6747 3.0566 1.0775 14 6 3.7209 1.2991 1.7538 15 6 1.3688 1.8772 2.2850 16 8 0.7243 0.8530 2.3654 17 7 1.1104 2.9033 3.1198 18 6 1.9599 4.0967 3.0984 19 6 -0.0162 2.8228 4.0527 20 6 -0.9963 3.9627 3.7684 21 6 -2.1732 3.8783 4.7423 22 6 -1.6567 3.9958 6.1778 23 6 -0.6766 2.8560 6.4621 24 6 0.5007 2.9407 5.4879 25 1 -0.3633 -1.0162 0.1528 26 1 -0.3633 0.6405 0.8036 27 1 -0.3633 0.3758 -0.9566 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.6055 1.6380 -4.3159 31 1 4.5251 1.4356 1.0307 32 1 4.0177 1.7256 2.7120 33 1 3.5195 0.2350 1.8765 34 1 1.6143 4.7747 2.3181 35 1 1.9067 4.5979 4.0648 36 1 2.9907 3.8054 2.8964 37 1 -0.5242 1.8666 3.9273 38 1 -0.4880 4.9187 3.8942 39 1 -1.3646 3.8787 2.7459 40 1 -2.6814 2.9222 4.6163 41 1 -2.8712 4.6906 4.5401 42 1 -2.4952 3.9362 6.8716 43 1 -1.1486 4.9519 6.3039 44 1 -1.1848 1.8999 6.3360 45 1 -0.3090 2.9394 7.4848 46 1 1.1989 2.1286 5.6905 47 1 1.0089 3.8967 5.6136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411213813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -20.209667 kcal Electronic energy + Delta-G solvation = -24344.125970 eV Core-core repulsion = 21141.415498 eV Total energy + Delta-G solvation = -3202.710472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06371 -38.19318 -35.83046 -34.76742 -32.10065 -31.20701 -30.86485 -29.58769 -28.24346 -26.60788 -24.40352 -23.38096 -22.70050 -22.32423 -20.70698 -19.56137 -18.40515 -17.00496 -16.28194 -16.19313 -15.37002 -15.07594 -14.87746 -14.33599 -14.21898 -14.01282 -13.46320 -13.23183 -12.93189 -12.76088 -12.54945 -12.44858 -12.35960 -12.25984 -12.07738 -11.71724 -11.55538 -11.25531 -11.21327 -11.13140 -10.84563 -10.78253 -10.71081 -10.45318 -10.36686 -10.33228 -10.22587 -9.72335 -9.22370 -8.97059 -8.44046 -8.23851 -6.77920 -5.94833 -3.47325 3.17625 3.31589 3.38368 3.49393 3.55738 4.55482 4.56689 4.67205 4.78856 4.97894 5.04612 5.13542 5.18182 5.29279 5.34889 5.37792 5.40801 5.41662 5.52495 5.63476 5.64924 5.79154 5.89822 5.90000 5.93734 5.95078 6.00378 6.03407 6.11719 6.15301 6.27920 6.29178 6.34323 6.46302 6.52346 6.69275 6.77409 6.86978 6.88069 7.16660 7.44674 7.76477 8.12249 8.37844 8.76232 8.99227 9.71246 10.12946 11.19500 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.004718 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.881525 B = 5933.282511 C = 5996.957023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 N -0.589 5.589 4 C -0.269 4.269 5 H 0.077 0.923 6 C 0.040 3.960 7 N -0.907 5.907 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.307 1.307 11 H -0.269 1.269 12 C 0.158 3.842 13 H 0.089 0.911 14 C -0.157 4.157 15 C 0.504 3.496 16 O -0.530 6.530 17 N -0.620 5.620 18 C 0.080 3.920 19 C 0.140 3.860 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 4.562 19.235 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 N -0.312 5.312 4 C -0.397 4.397 5 H 0.094 0.906 6 C -0.161 4.161 7 N -0.549 5.549 8 Si 0.731 3.269 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.194 1.194 12 C 0.047 3.953 13 H 0.107 0.893 14 C -0.216 4.216 15 C 0.292 3.708 16 O -0.405 6.405 17 N -0.355 5.355 18 C -0.064 4.064 19 C 0.037 3.963 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.494 3.997 19.042 19.768 hybrid contribution 0.399 -0.782 -0.158 0.892 sum -3.094 3.214 18.884 19.404 Atomic orbital electron populations 1.22233 0.98430 0.99372 1.01528 1.20995 0.93268 0.85931 0.97782 1.43987 1.73024 1.11375 1.02786 1.18725 1.39595 0.97008 0.84384 0.90579 1.25451 0.97072 0.98171 0.95416 1.69784 1.48075 1.39638 0.97370 0.86625 0.79186 0.84445 0.76656 1.21387 1.23548 1.19440 1.20447 0.89748 0.98909 0.86196 0.89284 1.22231 0.98479 1.01104 0.99826 1.22214 0.85412 0.82224 0.80967 1.90565 1.51321 1.28994 1.69645 1.48076 1.30667 1.18273 1.38483 1.21720 0.94976 0.87862 1.01808 1.20970 0.87171 1.00344 0.87855 1.21873 0.96180 0.98679 0.99786 1.21500 0.97433 1.02094 0.94449 1.21554 0.98738 0.98749 0.96656 1.21500 0.96250 0.99074 0.98614 1.21886 0.97987 1.02083 0.94477 0.95210 0.91323 0.93767 0.95157 0.93295 0.92667 0.91432 0.93619 0.92727 0.92607 0.91436 0.91051 0.88477 0.91851 0.91488 0.91817 0.91874 0.92143 0.92069 0.91816 0.91982 0.91777 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.53 37.16 0.35 -3.27 16 2 C 0.14 3.49 4.41 -4.04 -0.02 3.47 16 3 N -0.59 -14.38 1.97 -166.98 -0.33 -14.70 16 4 C -0.27 -7.52 9.80 -15.06 -0.15 -7.66 16 5 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 6 C 0.04 1.15 5.43 -17.43 -0.09 1.05 16 7 N -0.91 -27.85 13.97 55.49 0.78 -27.07 16 8 Si 0.90 23.23 24.74 -169.99 -4.21 19.02 16 9 H -0.29 -7.35 6.72 56.52 0.38 -6.97 16 10 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 11 H -0.27 -6.73 7.07 56.52 0.40 -6.33 16 12 C 0.16 3.16 2.33 -69.08 -0.16 3.00 16 13 H 0.09 1.70 6.20 -51.93 -0.32 1.37 16 14 C -0.16 -2.79 9.23 37.16 0.34 -2.45 16 15 C 0.50 9.46 6.63 -10.99 -0.07 9.39 16 16 O -0.53 -11.29 11.02 5.56 0.06 -11.23 16 17 N -0.62 -9.16 2.76 -173.94 -0.48 -9.64 16 18 C 0.08 0.92 8.60 59.85 0.51 1.44 16 19 C 0.14 1.83 2.51 -67.94 -0.17 1.66 16 20 C -0.13 -1.46 5.21 -26.74 -0.14 -1.60 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.12 -1.04 5.93 -26.71 -0.16 -1.19 16 24 C -0.13 -1.31 5.19 -26.71 -0.14 -1.45 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.61 5.43 -51.93 -0.28 1.33 16 27 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.79 2.57 -51.93 -0.13 0.65 16 29 H 0.05 1.13 6.04 -51.93 -0.31 0.82 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 36 H 0.07 0.79 6.61 -51.93 -0.34 0.45 16 37 H 0.10 1.52 6.91 -51.92 -0.36 1.16 16 38 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.60 6.66 -51.93 -0.35 0.25 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -31.84 345.44 -7.44 -39.27 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.26 Total: -0.80 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.21 Total: -0.06 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.03 Total: -51.42 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.06 Total: -11.23 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.21 Total: 19.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.84 -7.44 -39.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411213813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.063 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds